HEADER LIGASE 01-OCT-13 4C8U TITLE XENOPUS ZNRF3 ECTODOMAIN CRYSTAL FORM II COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE ZNRF3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: ECTODOMAIN, RESIDUES 24-191; COMPND 5 SYNONYM: ZINC/RING FINGER PROTEIN 3, ZNRF3; COMPND 6 EC: 6.3.2.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XENOPUS (SILURANA) TROPICALIS; SOURCE 3 ORGANISM_COMMON: WESTERN CLAWED FROG; SOURCE 4 ORGANISM_TAXID: 8364; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: TRANSIENT; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHLSEC KEYWDS LIGASE, WNT, RNF43, LGR4, LGR5, LGR6, RSPO, R-SPONDIN, R-SPO, RSPO1, KEYWDS 2 RSPO2, RSPO3, RSPO4, RECEPTOR, MEMBRANE, SIGNALLING EXPDTA X-RAY DIFFRACTION AUTHOR M.ZEBISCH,E.Y.JONES REVDAT 3 16-OCT-19 4C8U 1 SOURCE REVDAT 2 27-NOV-13 4C8U 1 JRNL REVDAT 1 20-NOV-13 4C8U 0 JRNL AUTH M.ZEBISCH,Y.XU,C.KRASTEV,B.T.MACDONALD,M.CHEN,R.J.C.GILBERT, JRNL AUTH 2 X.HE,E.Y.JONES JRNL TITL STRUCTURAL AND MOLECULAR BASIS OF ZNRF3/RNF43 TRANSMEMBRANE JRNL TITL 2 UBIQUITIN LIGASE INHIBITION BY THE WNT AGONIST R-SPONDIN. JRNL REF NAT.COMMUN. V. 4 2787 2013 JRNL REFN ESSN 2041-1723 JRNL PMID 24225776 JRNL DOI 10.1038/NCOMMS3787 REMARK 2 REMARK 2 RESOLUTION. 3.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 5981 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.284 REMARK 3 R VALUE (WORKING SET) : 0.281 REMARK 3 FREE R VALUE : 0.351 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 291 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 446 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.3910 REMARK 3 BIN FREE R VALUE SET COUNT : 19 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2206 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.26000 REMARK 3 B22 (A**2) : 13.49000 REMARK 3 B33 (A**2) : -6.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.653 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.715 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 39.524 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.909 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.828 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2246 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2159 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3044 ; 1.476 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4955 ; 0.776 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 286 ; 8.513 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 99 ;33.949 ;24.747 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 377 ;20.166 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;18.286 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 345 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2556 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 482 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4C8U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1290058581. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6320 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.010 REMARK 200 RESOLUTION RANGE LOW (A) : 75.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 19.90 REMARK 200 R MERGE (I) : 0.37000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.19400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.84100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.70500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.84100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.19400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.70500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 2480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 22 REMARK 465 THR A 23 REMARK 465 GLY A 24 REMARK 465 GLU A 25 REMARK 465 SER A 26 REMARK 465 LEU A 27 REMARK 465 ALA A 28 REMARK 465 LYS A 29 REMARK 465 ASN A 81 REMARK 465 ASN A 82 REMARK 465 ASN A 83 REMARK 465 ASP A 84 REMARK 465 GLU A 85 REMARK 465 GLU A 86 REMARK 465 PRO A 182 REMARK 465 PRO A 183 REMARK 465 ARG A 184 REMARK 465 GLN A 185 REMARK 465 PRO A 186 REMARK 465 THR A 187 REMARK 465 GLU A 188 REMARK 465 TYR A 189 REMARK 465 PHE A 190 REMARK 465 ASP A 191 REMARK 465 GLY A 192 REMARK 465 THR A 193 REMARK 465 HIS A 194 REMARK 465 HIS A 195 REMARK 465 HIS A 196 REMARK 465 HIS A 197 REMARK 465 HIS A 198 REMARK 465 HIS A 199 REMARK 465 HIS A 200 REMARK 465 HIS A 201 REMARK 465 HIS A 202 REMARK 465 HIS A 203 REMARK 465 GLU B 22 REMARK 465 THR B 23 REMARK 465 GLY B 24 REMARK 465 GLU B 25 REMARK 465 SER B 26 REMARK 465 LEU B 27 REMARK 465 ALA B 28 REMARK 465 LYS B 29 REMARK 465 ASN B 81 REMARK 465 ASN B 82 REMARK 465 ASN B 83 REMARK 465 ASP B 84 REMARK 465 GLU B 85 REMARK 465 GLU B 86 REMARK 465 ASP B 87 REMARK 465 LEU B 88 REMARK 465 PRO B 182 REMARK 465 PRO B 183 REMARK 465 ARG B 184 REMARK 465 GLN B 185 REMARK 465 PRO B 186 REMARK 465 THR B 187 REMARK 465 GLU B 188 REMARK 465 TYR B 189 REMARK 465 PHE B 190 REMARK 465 ASP B 191 REMARK 465 GLY B 192 REMARK 465 THR B 193 REMARK 465 HIS B 194 REMARK 465 HIS B 195 REMARK 465 HIS B 196 REMARK 465 HIS B 197 REMARK 465 HIS B 198 REMARK 465 HIS B 199 REMARK 465 HIS B 200 REMARK 465 HIS B 201 REMARK 465 HIS B 202 REMARK 465 HIS B 203 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 60 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 107 CG CD CE NZ REMARK 470 LYS A 170 CG CD CE NZ REMARK 470 GLN A 171 CG CD OE1 NE2 REMARK 470 LYS A 172 CG CD CE NZ REMARK 470 ARG B 60 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 107 CG CD CE NZ REMARK 470 LYS B 170 CG CD CE NZ REMARK 470 GLN B 171 CG CD OE1 NE2 REMARK 470 LYS B 172 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 67 -179.00 -176.47 REMARK 500 GLU A 68 144.19 -177.92 REMARK 500 VAL A 127 123.09 -174.45 REMARK 500 PRO A 135 1.12 -66.52 REMARK 500 LEU A 149 154.68 -47.93 REMARK 500 MET A 156 138.84 -171.33 REMARK 500 HIS A 180 63.69 -113.81 REMARK 500 THR B 64 76.78 -101.51 REMARK 500 ALA B 67 166.24 179.44 REMARK 500 ARG B 122 42.64 -96.63 REMARK 500 ASN B 142 40.72 -97.68 REMARK 500 LEU B 149 172.32 -56.74 REMARK 500 PRO B 152 122.46 -38.85 REMARK 500 LYS B 157 -174.66 -172.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 7-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 8-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 1182 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4C84 RELATED DB: PDB REMARK 900 ZEBRAFISH ZNRF3 ECTODOMAIN CRYSTAL FORM I REMARK 900 RELATED ID: 4C85 RELATED DB: PDB REMARK 900 ZEBRAFISH ZNRF3 ECTODOMAIN CRYSTAL FORM II REMARK 900 RELATED ID: 4C86 RELATED DB: PDB REMARK 900 MOUSE ZNRF3 ECTODOMAIN CRYSTAL FORM I REMARK 900 RELATED ID: 4C8A RELATED DB: PDB REMARK 900 MOUSE ZNRF3 ECTODOMAIN CRYSTAL FORM II REMARK 900 RELATED ID: 4C8C RELATED DB: PDB REMARK 900 MOUSE ZNRF3 ECTODOMAIN CRYSTAL FORM III REMARK 900 RELATED ID: 4C8F RELATED DB: PDB REMARK 900 MOUSE ZNRF3 ECTODOMAIN CRYSTAL FORM IV REMARK 900 RELATED ID: 4C8P RELATED DB: PDB REMARK 900 MOUSE ZNRF3 ECTODOMAIN CRYSTAL FORM V, DISULFIDE-BRIDGED S90C REMARK 900 VARIANT REMARK 900 RELATED ID: 4C8T RELATED DB: PDB REMARK 900 XENOPUS ZNRF3 ECTODOMAIN CRYSTAL FORM I REMARK 900 RELATED ID: 4C8V RELATED DB: PDB REMARK 900 XENOPUS RSPO2 FU1-FU2 CRYSTAL FORM I REMARK 900 RELATED ID: 4C8W RELATED DB: PDB REMARK 900 XENOPUS RSPO2 FU1-FU2 CRYSTAL FORM II REMARK 900 RELATED ID: 4C99 RELATED DB: PDB REMARK 900 MOUSE ZNRF3 ECTODOMAIN IN COMPLEX WITH MOUSE RSPO2 FU1 -FU2 CRYSTAL REMARK 900 FORM I REMARK 900 RELATED ID: 4C9A RELATED DB: PDB REMARK 900 MOUSE ZNRF3 ECTODOMAIN IN COMPLEX WITH XENOPUS RSPO2 FU1-FU2 REMARK 900 (SELENO MET) CRYSTAL FORM I REMARK 900 RELATED ID: 4C9E RELATED DB: PDB REMARK 900 MOUSE ZNRF3 ECTODOMAIN IN COMPLEX WITH XENOPUS RSPO2 FU1-FU2 REMARK 900 (SELENO MET) CRYSTAL FORM II REMARK 900 RELATED ID: 4C9R RELATED DB: PDB REMARK 900 XENOPUS ZNRF3 ECTODOMAIN IN COMPLEX WITH XENOPUS RSPO2 FU1-FU2 REMARK 900 CRYSTAL FORM I REMARK 900 RELATED ID: 4C9U RELATED DB: PDB REMARK 900 XENOPUS ZNRF3 ECTODOMAIN IN COMPLEX WITH XENOPUS RSPO2 FU1-FU2 REMARK 900 CRYSTAL FORM II REMARK 900 RELATED ID: 4C9V RELATED DB: PDB REMARK 900 XENOPUS RNF43 ECTODOMAIN IN COMPLEX WITH XENOPUS RSPO2 FU1-FU2 DBREF 4C8U A 24 191 UNP Q08D68 ZNRF3_XENTR 24 191 DBREF 4C8U B 24 191 UNP Q08D68 ZNRF3_XENTR 24 191 SEQADV 4C8U GLU A 22 UNP Q08D68 EXPRESSION TAG SEQADV 4C8U THR A 23 UNP Q08D68 EXPRESSION TAG SEQADV 4C8U GLY A 192 UNP Q08D68 EXPRESSION TAG SEQADV 4C8U THR A 193 UNP Q08D68 EXPRESSION TAG SEQADV 4C8U HIS A 194 UNP Q08D68 EXPRESSION TAG SEQADV 4C8U HIS A 195 UNP Q08D68 EXPRESSION TAG SEQADV 4C8U HIS A 196 UNP Q08D68 EXPRESSION TAG SEQADV 4C8U HIS A 197 UNP Q08D68 EXPRESSION TAG SEQADV 4C8U HIS A 198 UNP Q08D68 EXPRESSION TAG SEQADV 4C8U HIS A 199 UNP Q08D68 EXPRESSION TAG SEQADV 4C8U HIS A 200 UNP Q08D68 EXPRESSION TAG SEQADV 4C8U HIS A 201 UNP Q08D68 EXPRESSION TAG SEQADV 4C8U HIS A 202 UNP Q08D68 EXPRESSION TAG SEQADV 4C8U HIS A 203 UNP Q08D68 EXPRESSION TAG SEQADV 4C8U GLU B 22 UNP Q08D68 EXPRESSION TAG SEQADV 4C8U THR B 23 UNP Q08D68 EXPRESSION TAG SEQADV 4C8U GLY B 192 UNP Q08D68 EXPRESSION TAG SEQADV 4C8U THR B 193 UNP Q08D68 EXPRESSION TAG SEQADV 4C8U HIS B 194 UNP Q08D68 EXPRESSION TAG SEQADV 4C8U HIS B 195 UNP Q08D68 EXPRESSION TAG SEQADV 4C8U HIS B 196 UNP Q08D68 EXPRESSION TAG SEQADV 4C8U HIS B 197 UNP Q08D68 EXPRESSION TAG SEQADV 4C8U HIS B 198 UNP Q08D68 EXPRESSION TAG SEQADV 4C8U HIS B 199 UNP Q08D68 EXPRESSION TAG SEQADV 4C8U HIS B 200 UNP Q08D68 EXPRESSION TAG SEQADV 4C8U HIS B 201 UNP Q08D68 EXPRESSION TAG SEQADV 4C8U HIS B 202 UNP Q08D68 EXPRESSION TAG SEQADV 4C8U HIS B 203 UNP Q08D68 EXPRESSION TAG SEQRES 1 A 182 GLU THR GLY GLU SER LEU ALA LYS GLU THR ALA PHE VAL SEQRES 2 A 182 GLU VAL VAL LEU PHE GLU SER SER PRO ASN GLY ASP TYR SEQRES 3 A 182 LYS THR HIS THR THR GLU LEU GLN GLY ARG PHE SER ARG SEQRES 4 A 182 ALA GLY ALA THR ILE SER ALA GLU GLY GLU ILE VAL GLN SEQRES 5 A 182 MET HIS PRO LEU GLY LEU CYS ASN ASN ASN ASP GLU GLU SEQRES 6 A 182 ASP LEU TYR GLU TYR GLY TRP VAL GLY VAL VAL LYS LEU SEQRES 7 A 182 GLU GLN PRO GLU MET ASP PRO LYS PRO CYS LEU THR VAL SEQRES 8 A 182 LEU GLY LYS ALA LYS ARG ALA VAL GLN ARG GLY ALA THR SEQRES 9 A 182 ALA VAL ILE PHE ASP VAL SER ASP ASN PRO ASP ALA VAL SEQRES 10 A 182 GLU GLN LEU ASN GLN GLY LEU GLU ASP PRO LEU LYS ARG SEQRES 11 A 182 PRO VAL VAL TYR MET LYS GLY MET ASP ALA ILE LYS LEU SEQRES 12 A 182 MET ASN ILE VAL ASN LYS GLN LYS GLY ALA ARG ALA ARG SEQRES 13 A 182 ILE GLN HIS ARG PRO PRO ARG GLN PRO THR GLU TYR PHE SEQRES 14 A 182 ASP GLY THR HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 B 182 GLU THR GLY GLU SER LEU ALA LYS GLU THR ALA PHE VAL SEQRES 2 B 182 GLU VAL VAL LEU PHE GLU SER SER PRO ASN GLY ASP TYR SEQRES 3 B 182 LYS THR HIS THR THR GLU LEU GLN GLY ARG PHE SER ARG SEQRES 4 B 182 ALA GLY ALA THR ILE SER ALA GLU GLY GLU ILE VAL GLN SEQRES 5 B 182 MET HIS PRO LEU GLY LEU CYS ASN ASN ASN ASP GLU GLU SEQRES 6 B 182 ASP LEU TYR GLU TYR GLY TRP VAL GLY VAL VAL LYS LEU SEQRES 7 B 182 GLU GLN PRO GLU MET ASP PRO LYS PRO CYS LEU THR VAL SEQRES 8 B 182 LEU GLY LYS ALA LYS ARG ALA VAL GLN ARG GLY ALA THR SEQRES 9 B 182 ALA VAL ILE PHE ASP VAL SER ASP ASN PRO ASP ALA VAL SEQRES 10 B 182 GLU GLN LEU ASN GLN GLY LEU GLU ASP PRO LEU LYS ARG SEQRES 11 B 182 PRO VAL VAL TYR MET LYS GLY MET ASP ALA ILE LYS LEU SEQRES 12 B 182 MET ASN ILE VAL ASN LYS GLN LYS GLY ALA ARG ALA ARG SEQRES 13 B 182 ILE GLN HIS ARG PRO PRO ARG GLN PRO THR GLU TYR PHE SEQRES 14 B 182 ASP GLY THR HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS HET BR A1182 1 HETNAM BR BROMIDE ION FORMUL 3 BR BR 1- HELIX 1 1 HIS A 75 LEU A 79 5 5 HELIX 2 2 GLN A 101 ASP A 105 5 5 HELIX 3 3 THR A 111 ARG A 122 1 12 HELIX 4 4 ASP A 136 GLN A 143 1 8 HELIX 5 5 LYS A 157 GLN A 171 1 15 HELIX 6 6 HIS B 75 LEU B 79 5 5 HELIX 7 7 GLN B 101 ASP B 105 5 5 HELIX 8 8 THR B 111 ARG B 122 1 12 HELIX 9 9 ASP B 136 ASN B 142 1 7 HELIX 10 10 LYS B 157 ASN B 169 1 13 SHEET 1 AA 8 THR A 31 SER A 41 0 SHEET 2 AA 8 TYR A 47 PHE A 58 -1 O LYS A 48 N GLU A 40 SHEET 3 AA 8 VAL A 154 MET A 156 -1 O TYR A 155 N ARG A 57 SHEET 4 AA 8 ALA A 124 ASP A 130 1 O VAL A 127 N VAL A 154 SHEET 5 AA 8 TRP A 93 LYS A 98 1 O TRP A 93 N THR A 125 SHEET 6 AA 8 ALA A 67 VAL A 72 1 O GLU A 70 N VAL A 94 SHEET 7 AA 8 ALA A 174 GLN A 179 -1 O ALA A 174 N ILE A 71 SHEET 8 AA 8 THR A 31 SER A 41 -1 O PHE A 33 N GLN A 179 SHEET 1 BA 4 VAL B 154 TYR B 155 0 SHEET 2 BA 4 GLY B 56 PHE B 58 -1 O ARG B 57 N TYR B 155 SHEET 3 BA 4 THR B 31 VAL B 37 -1 O ALA B 32 N GLY B 56 SHEET 4 BA 4 ARG B 175 GLN B 179 -1 O ARG B 175 N VAL B 37 SHEET 1 BB 2 GLU B 40 SER B 41 0 SHEET 2 BB 2 TYR B 47 LYS B 48 -1 O LYS B 48 N GLU B 40 SHEET 1 BC 3 ILE B 71 MET B 74 0 SHEET 2 BC 3 TRP B 93 VAL B 97 1 O VAL B 94 N VAL B 72 SHEET 3 BC 3 ALA B 124 ILE B 128 1 N THR B 125 O TRP B 93 SSBOND 1 CYS A 80 CYS A 109 1555 1555 2.04 SSBOND 2 CYS B 80 CYS B 109 1555 1555 2.03 SITE 1 AC1 4 LEU A 110 THR A 111 LYS B 163 ASN B 166 CRYST1 58.388 67.410 75.682 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017127 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014835 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013213 0.00000 MTRIX1 1 -1.000000 0.000000 -0.007000 0.44800 1 MTRIX2 1 0.000000 1.000000 -0.009000 0.72000 1 MTRIX3 1 0.007000 -0.009000 -1.000000 153.58700 1