HEADER TRANSCRIPTION 02-OCT-13 4C92 TITLE CRYSTAL STRUCTURE OF THE YEAST LSM1-7 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: SM-LIKE PROTEIN LSM1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 27-172; COMPND 5 SYNONYM: SPB8 PROTEIN, LSM1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM2; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: RESIDUES 2-95; COMPND 11 SYNONYM: SMALL NUCLEAR RIBONUCLEOPROTEIN D HOMOLOG SNP3, LSM2; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3; COMPND 15 CHAIN: C; COMPND 16 FRAGMENT: RESIDUES 1-89; COMPND 17 SYNONYM: SMX4 PROTEIN, LSM3; COMPND 18 ENGINEERED: YES; COMPND 19 MOL_ID: 4; COMPND 20 MOLECULE: U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM4; COMPND 21 CHAIN: D; COMPND 22 FRAGMENT: RESIDUES 1-114; COMPND 23 SYNONYM: LSM4; COMPND 24 ENGINEERED: YES; COMPND 25 MOL_ID: 5; COMPND 26 MOLECULE: U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM5; COMPND 27 CHAIN: E; COMPND 28 FRAGMENT: RESIDUES 1-93; COMPND 29 SYNONYM: LSM5; COMPND 30 ENGINEERED: YES; COMPND 31 MOL_ID: 6; COMPND 32 MOLECULE: U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM6; COMPND 33 CHAIN: F; COMPND 34 FRAGMENT: RESIDUES 1-86; COMPND 35 SYNONYM: LSM6; COMPND 36 ENGINEERED: YES; COMPND 37 MOL_ID: 7; COMPND 38 MOLECULE: U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM7; COMPND 39 CHAIN: G; COMPND 40 FRAGMENT: RESIDUES 1-115; COMPND 41 SYNONYM: 7; COMPND 42 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 9 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 10 ORGANISM_TAXID: 4932; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 15 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 16 ORGANISM_TAXID: 4932; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 19 MOL_ID: 4; SOURCE 20 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 21 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 22 ORGANISM_TAXID: 4932; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 25 MOL_ID: 5; SOURCE 26 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 27 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 28 ORGANISM_TAXID: 4932; SOURCE 29 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 30 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 31 MOL_ID: 6; SOURCE 32 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 33 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 34 ORGANISM_TAXID: 4932; SOURCE 35 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 36 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 37 MOL_ID: 7; SOURCE 38 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 39 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 40 ORGANISM_TAXID: 4932; SOURCE 41 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 42 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSCRIPTION, LSM1-7, DECAPPING ACTIVATORS, MRNA DEGRADATION EXPDTA X-RAY DIFFRACTION AUTHOR H.SHARIF,E.CONTI REVDAT 4 20-DEC-23 4C92 1 SHEET REVDAT 3 20-NOV-13 4C92 1 JRNL REVDAT 2 30-OCT-13 4C92 1 JRNL REVDAT 1 16-OCT-13 4C92 0 JRNL AUTH H.SHARIF,E.CONTI JRNL TITL ARCHITECTURE OF THE LSM1-7-PAT1 COMPLEX: A CONSERVED JRNL TITL 2 ASSEMBLY IN EUKARYOTIC MRNA TURNOVER JRNL REF CELL REP. V. 5 283 2013 JRNL REFN ESSN 2211-1247 JRNL PMID 24139796 JRNL DOI 10.1016/J.CELREP.2013.10.004 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.040 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 62641 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3122 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 54.0082 - 6.4372 0.95 2663 140 0.1767 0.2006 REMARK 3 2 6.4372 - 5.1107 0.97 2713 144 0.2183 0.2897 REMARK 3 3 5.1107 - 4.4650 0.94 2642 139 0.1453 0.1686 REMARK 3 4 4.4650 - 4.0569 0.94 2627 138 0.1725 0.2108 REMARK 3 5 4.0569 - 3.7662 0.97 2714 134 0.1867 0.2104 REMARK 3 6 3.7662 - 3.5442 0.97 2716 139 0.1882 0.2463 REMARK 3 7 3.5442 - 3.3667 0.97 2758 147 0.1917 0.2646 REMARK 3 8 3.3667 - 3.2202 0.97 2678 140 0.2047 0.2330 REMARK 3 9 3.2202 - 3.0962 0.97 2719 144 0.2163 0.2840 REMARK 3 10 3.0962 - 2.9894 0.98 2733 146 0.2335 0.3115 REMARK 3 11 2.9894 - 2.8959 0.98 2781 146 0.2472 0.3144 REMARK 3 12 2.8959 - 2.8132 0.99 2745 142 0.2491 0.3163 REMARK 3 13 2.8132 - 2.7391 0.99 2779 146 0.2563 0.2958 REMARK 3 14 2.7391 - 2.6723 0.99 2779 146 0.2767 0.3592 REMARK 3 15 2.6723 - 2.6115 0.99 2781 144 0.2845 0.3475 REMARK 3 16 2.6115 - 2.5560 0.99 2744 144 0.2991 0.3632 REMARK 3 17 2.5560 - 2.5048 0.98 2793 149 0.3000 0.3751 REMARK 3 18 2.5048 - 2.4576 0.96 2657 140 0.3230 0.3895 REMARK 3 19 2.4576 - 2.4137 0.96 2744 149 0.3323 0.3746 REMARK 3 20 2.4137 - 2.3728 0.98 2687 141 0.3364 0.4227 REMARK 3 21 2.3728 - 2.3345 0.97 2777 143 0.3243 0.3583 REMARK 3 22 2.3345 - 2.2986 0.82 2289 121 0.3281 0.3444 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.13 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4947 REMARK 3 ANGLE : 1.223 6680 REMARK 3 CHIRALITY : 0.084 797 REMARK 3 PLANARITY : 0.004 854 REMARK 3 DIHEDRAL : 15.384 1804 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4C92 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1290058580. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9980 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62699 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 95.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 2Y9A, 3BW1, 4EMK REMARK 200 REMARK 200 REMARK: MOLECULAR REPLACEMENT WITH CHIMERIC MODEL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES PH 6.0, 40% MPD REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.28500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEPTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEPTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 27 REMARK 465 GLU A 28 REMARK 465 GLY A 29 REMARK 465 GLU A 30 REMARK 465 ALA A 31 REMARK 465 ASP A 32 REMARK 465 LEU A 33 REMARK 465 TYR A 34 REMARK 465 LEU A 35 REMARK 465 ASP A 36 REMARK 465 GLN A 37 REMARK 465 TYR A 38 REMARK 465 ASN A 39 REMARK 465 PHE A 40 REMARK 465 THR A 41 REMARK 465 THR A 42 REMARK 465 SER C 80 REMARK 465 GLU C 81 REMARK 465 ASP C 82 REMARK 465 ASP C 83 REMARK 465 ASP C 84 REMARK 465 GLY C 85 REMARK 465 ALA C 86 REMARK 465 VAL C 87 REMARK 465 GLU C 88 REMARK 465 ILE C 89 REMARK 465 ILE D 85 REMARK 465 ILE D 86 REMARK 465 ASP D 87 REMARK 465 LYS D 88 REMARK 465 VAL D 89 REMARK 465 LYS D 90 REMARK 465 GLN D 91 REMARK 465 GLN D 92 REMARK 465 ILE D 93 REMARK 465 ASN D 94 REMARK 465 SER D 95 REMARK 465 ASN D 96 REMARK 465 ASN D 97 REMARK 465 ASN D 98 REMARK 465 SER D 99 REMARK 465 ASN D 100 REMARK 465 SER D 101 REMARK 465 ASN D 102 REMARK 465 GLY D 103 REMARK 465 PRO D 104 REMARK 465 GLY D 105 REMARK 465 HIS D 106 REMARK 465 LYS D 107 REMARK 465 ARG D 108 REMARK 465 TYR D 109 REMARK 465 TYR D 110 REMARK 465 ASN D 111 REMARK 465 ASN D 112 REMARK 465 ARG D 113 REMARK 465 ASP D 114 REMARK 465 MET E 1 REMARK 465 SER E 2 REMARK 465 LEU E 3 REMARK 465 THR E 88 REMARK 465 PRO E 89 REMARK 465 THR E 90 REMARK 465 GLU E 91 REMARK 465 ALA E 92 REMARK 465 LEU E 93 REMARK 465 MET F 1 REMARK 465 SER F 2 REMARK 465 GLY F 3 REMARK 465 LYS F 4 REMARK 465 ALA F 5 REMARK 465 SER F 6 REMARK 465 THR F 7 REMARK 465 GLU F 8 REMARK 465 GLY F 9 REMARK 465 MET G 1 REMARK 465 HIS G 2 REMARK 465 GLN G 3 REMARK 465 GLN G 4 REMARK 465 HIS G 5 REMARK 465 SER G 6 REMARK 465 LYS G 7 REMARK 465 SER G 8 REMARK 465 GLU G 9 REMARK 465 ASN G 10 REMARK 465 LYS G 11 REMARK 465 PRO G 12 REMARK 465 GLN G 13 REMARK 465 GLN G 14 REMARK 465 GLN G 15 REMARK 465 ARG G 16 REMARK 465 LYS G 17 REMARK 465 LYS G 18 REMARK 465 PHE G 19 REMARK 465 GLU G 20 REMARK 465 GLY G 21 REMARK 465 PRO G 22 REMARK 465 LYS G 23 REMARK 465 ARG G 24 REMARK 465 GLU G 25 REMARK 465 ASN G 72 REMARK 465 PRO G 73 REMARK 465 ASP G 74 REMARK 465 ASP G 75 REMARK 465 GLU G 76 REMARK 465 ASN G 77 REMARK 465 ASN G 78 REMARK 465 THR G 79 REMARK 465 GLU G 80 REMARK 465 LEU G 81 REMARK 465 LEU G 111 REMARK 465 TYR G 112 REMARK 465 MET G 113 REMARK 465 GLN G 114 REMARK 465 LYS G 115 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 43 OG1 CG2 REMARK 470 GLU A 91 CG CD OE1 OE2 REMARK 470 LYS A 119 CG CD CE NZ REMARK 470 LYS A 155 CG CD CE NZ REMARK 470 SER A 169 OG REMARK 470 SER B -9 OG REMARK 470 SER B 44 OG REMARK 470 THR B 46 OG1 CG2 REMARK 470 LYS B 74 CG CD CE NZ REMARK 470 ASN B 75 CG OD1 ND2 REMARK 470 LYS B 95 CG CD CE NZ REMARK 470 GLU C 14 CG CD OE1 OE2 REMARK 470 TYR C 49 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN C 50 CG CD OE1 NE2 REMARK 470 ASN C 52 CG OD1 ND2 REMARK 470 ASN C 53 CG OD1 ND2 REMARK 470 GLU C 55 CG CD OE1 OE2 REMARK 470 LEU C 56 CG CD1 CD2 REMARK 470 GLU C 58 CG CD OE1 OE2 REMARK 470 GLU C 60 CG CD OE1 OE2 REMARK 470 ARG C 62 CG CD NE CZ NH1 NH2 REMARK 470 PRO C 79 CG CD REMARK 470 MET D 1 CG SD CE REMARK 470 LEU D 4 CG CD1 CD2 REMARK 470 TYR D 5 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU D 23 CG CD OE1 OE2 REMARK 470 ASN D 34 CG OD1 ND2 REMARK 470 ASP D 56 CG OD1 OD2 REMARK 470 ASN D 57 CG OD1 ND2 REMARK 470 GLU D 59 CG CD OE1 OE2 REMARK 470 SER D 60 OG REMARK 470 SER D 61 OG REMARK 470 LYS D 62 CG CD CE NZ REMARK 470 GLN D 82 CG CD OE1 NE2 REMARK 470 ASP D 83 CG OD1 OD2 REMARK 470 ASN D 84 CG OD1 ND2 REMARK 470 PRO E 4 CG CD REMARK 470 LYS E 19 CG CD CE NZ REMARK 470 ASP E 54 CG OD1 OD2 REMARK 470 GLU E 58 CG CD OE1 OE2 REMARK 470 ARG E 60 CG CD NE CZ NH1 NH2 REMARK 470 LYS E 86 CG CD CE NZ REMARK 470 LYS E 87 CG CD CE NZ REMARK 470 SER F 10 OG REMARK 470 LYS F 62 CG CD CE NZ REMARK 470 LYS F 66 CG CD CE NZ REMARK 470 SER F 69 OG REMARK 470 ILE F 86 CG1 CG2 CD1 REMARK 470 LEU G 28 CG CD1 CD2 REMARK 470 LYS G 32 CG CD CE NZ REMARK 470 SER G 71 OG REMARK 470 ILE G 82 CG1 CG2 CD1 REMARK 470 SER G 83 OG REMARK 470 LYS G 84 CG CD CE NZ REMARK 470 ASN G 85 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU C 75 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 22 -6.01 93.14 REMARK 500 SER C 77 -155.50 -152.45 REMARK 500 GLU F 57 -51.18 72.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4C8Q RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE YEAST LSM1-7-PAT1 COMPLEX DBREF 4C92 A 27 172 UNP P47017 LSM1_YEAST 27 172 DBREF 4C92 B 2 95 UNP P38203 LSM2_YEAST 2 95 DBREF 4C92 C 1 89 UNP P57743 LSM3_YEAST 1 89 DBREF 4C92 D 1 114 UNP P40070 LSM4_YEAST 1 114 DBREF 4C92 E 1 93 UNP P40089 LSM5_YEAST 1 93 DBREF 4C92 F 1 86 UNP Q06406 LSM6_YEAST 1 86 DBREF 4C92 G 1 115 UNP P53905 LSM7_YEAST 1 115 SEQADV 4C92 SER B -9 UNP P38203 EXPRESSION TAG SEQADV 4C92 GLU B -8 UNP P38203 EXPRESSION TAG SEQADV 4C92 ASN B -7 UNP P38203 EXPRESSION TAG SEQADV 4C92 LEU B -6 UNP P38203 EXPRESSION TAG SEQADV 4C92 TYR B -5 UNP P38203 EXPRESSION TAG SEQADV 4C92 PHE B -4 UNP P38203 EXPRESSION TAG SEQADV 4C92 GLN B -3 UNP P38203 EXPRESSION TAG SEQADV 4C92 GLY B -2 UNP P38203 EXPRESSION TAG SEQADV 4C92 SER B -1 UNP P38203 EXPRESSION TAG SEQADV 4C92 GLY B 0 UNP P38203 EXPRESSION TAG SEQADV 4C92 SER B 1 UNP P38203 EXPRESSION TAG SEQRES 1 A 146 SER GLU GLY GLU ALA ASP LEU TYR LEU ASP GLN TYR ASN SEQRES 2 A 146 PHE THR THR THR ALA ALA ILE VAL SER SER VAL ASP ARG SEQRES 3 A 146 LYS ILE PHE VAL LEU LEU ARG ASP GLY ARG MET LEU PHE SEQRES 4 A 146 GLY VAL LEU ARG THR PHE ASP GLN TYR ALA ASN LEU ILE SEQRES 5 A 146 LEU GLN ASP CYS VAL GLU ARG ILE TYR PHE SER GLU GLU SEQRES 6 A 146 ASN LYS TYR ALA GLU GLU ASP ARG GLY ILE PHE MET ILE SEQRES 7 A 146 ARG GLY GLU ASN VAL VAL MET LEU GLY GLU VAL ASP ILE SEQRES 8 A 146 ASP LYS GLU ASP GLN PRO LEU GLU ALA MET GLU ARG ILE SEQRES 9 A 146 PRO PHE LYS GLU ALA TRP LEU THR LYS GLN LYS ASN ASP SEQRES 10 A 146 GLU LYS ARG PHE LYS GLU GLU THR HIS LYS GLY LYS LYS SEQRES 11 A 146 MET ALA ARG HIS GLY ILE VAL TYR ASP PHE HIS LYS SER SEQRES 12 A 146 ASP MET TYR SEQRES 1 B 105 SER GLU ASN LEU TYR PHE GLN GLY SER GLY SER LEU PHE SEQRES 2 B 105 PHE SER PHE PHE LYS THR LEU VAL ASP GLN GLU VAL VAL SEQRES 3 B 105 VAL GLU LEU LYS ASN ASP ILE GLU ILE LYS GLY THR LEU SEQRES 4 B 105 GLN SER VAL ASP GLN PHE LEU ASN LEU LYS LEU ASP ASN SEQRES 5 B 105 ILE SER CYS THR ASP GLU LYS LYS TYR PRO HIS LEU GLY SEQRES 6 B 105 SER VAL ARG ASN ILE PHE ILE ARG GLY SER THR VAL ARG SEQRES 7 B 105 TYR VAL TYR LEU ASN LYS ASN MET VAL ASP THR ASN LEU SEQRES 8 B 105 LEU GLN ASP ALA THR ARG ARG GLU VAL MET THR GLU ARG SEQRES 9 B 105 LYS SEQRES 1 C 89 MET GLU THR PRO LEU ASP LEU LEU LYS LEU ASN LEU ASP SEQRES 2 C 89 GLU ARG VAL TYR ILE LYS LEU ARG GLY ALA ARG THR LEU SEQRES 3 C 89 VAL GLY THR LEU GLN ALA PHE ASP SER HIS CYS ASN ILE SEQRES 4 C 89 VAL LEU SER ASP ALA VAL GLU THR ILE TYR GLN LEU ASN SEQRES 5 C 89 ASN GLU GLU LEU SER GLU SER GLU ARG ARG CYS GLU MET SEQRES 6 C 89 VAL PHE ILE ARG GLY ASP THR VAL THR LEU ILE SER THR SEQRES 7 C 89 PRO SER GLU ASP ASP ASP GLY ALA VAL GLU ILE SEQRES 1 D 114 MET LEU PRO LEU TYR LEU LEU THR ASN ALA LYS GLY GLN SEQRES 2 D 114 GLN MET GLN ILE GLU LEU LYS ASN GLY GLU ILE ILE GLN SEQRES 3 D 114 GLY ILE LEU THR ASN VAL ASP ASN TRP MET ASN LEU THR SEQRES 4 D 114 LEU SER ASN VAL THR GLU TYR SER GLU GLU SER ALA ILE SEQRES 5 D 114 ASN SER GLU ASP ASN ALA GLU SER SER LYS ALA VAL LYS SEQRES 6 D 114 LEU ASN GLU ILE TYR ILE ARG GLY THR PHE ILE LYS PHE SEQRES 7 D 114 ILE LYS LEU GLN ASP ASN ILE ILE ASP LYS VAL LYS GLN SEQRES 8 D 114 GLN ILE ASN SER ASN ASN ASN SER ASN SER ASN GLY PRO SEQRES 9 D 114 GLY HIS LYS ARG TYR TYR ASN ASN ARG ASP SEQRES 1 E 93 MET SER LEU PRO GLU ILE LEU PRO LEU GLU VAL ILE ASP SEQRES 2 E 93 LYS THR ILE ASN GLN LYS VAL LEU ILE VAL LEU GLN SER SEQRES 3 E 93 ASN ARG GLU PHE GLU GLY THR LEU VAL GLY PHE ASP ASP SEQRES 4 E 93 PHE VAL ASN VAL ILE LEU GLU ASP ALA VAL GLU TRP LEU SEQRES 5 E 93 ILE ASP PRO GLU ASP GLU SER ARG ASN GLU LYS VAL MET SEQRES 6 E 93 GLN HIS HIS GLY ARG MET LEU LEU SER GLY ASN ASN ILE SEQRES 7 E 93 ALA ILE LEU VAL PRO GLY GLY LYS LYS THR PRO THR GLU SEQRES 8 E 93 ALA LEU SEQRES 1 F 86 MET SER GLY LYS ALA SER THR GLU GLY SER VAL THR THR SEQRES 2 F 86 GLU PHE LEU SER ASP ILE ILE GLY LYS THR VAL ASN VAL SEQRES 3 F 86 LYS LEU ALA SER GLY LEU LEU TYR SER GLY ARG LEU GLU SEQRES 4 F 86 SER ILE ASP GLY PHE MET ASN VAL ALA LEU SER SER ALA SEQRES 5 F 86 THR GLU HIS TYR GLU SER ASN ASN ASN LYS LEU LEU ASN SEQRES 6 F 86 LYS PHE ASN SER ASP VAL PHE LEU ARG GLY THR GLN VAL SEQRES 7 F 86 MET TYR ILE SER GLU GLN LYS ILE SEQRES 1 G 115 MET HIS GLN GLN HIS SER LYS SER GLU ASN LYS PRO GLN SEQRES 2 G 115 GLN GLN ARG LYS LYS PHE GLU GLY PRO LYS ARG GLU ALA SEQRES 3 G 115 ILE LEU ASP LEU ALA LYS TYR LYS ASP SER LYS ILE ARG SEQRES 4 G 115 VAL LYS LEU MET GLY GLY LYS LEU VAL ILE GLY VAL LEU SEQRES 5 G 115 LYS GLY TYR ASP GLN LEU MET ASN LEU VAL LEU ASP ASP SEQRES 6 G 115 THR VAL GLU TYR MET SER ASN PRO ASP ASP GLU ASN ASN SEQRES 7 G 115 THR GLU LEU ILE SER LYS ASN ALA ARG LYS LEU GLY LEU SEQRES 8 G 115 THR VAL ILE ARG GLY THR ILE LEU VAL SER LEU SER SER SEQRES 9 G 115 ALA GLU GLY SER ASP VAL LEU TYR MET GLN LYS FORMUL 8 HOH *108(H2 O) HELIX 1 2 ILE A 117 GLU A 125 1 9 HELIX 2 3 PHE A 132 HIS A 160 1 29 HELIX 3 4 LEU B 2 LEU B 10 1 9 HELIX 4 6 LYS B 74 MET B 76 5 3 HELIX 5 7 THR B 79 GLU B 93 1 15 HELIX 6 8 PRO C 4 ASN C 11 1 8 HELIX 7 10 LEU D 2 ASN D 9 1 8 HELIX 8 11 GLU D 48 ASN D 53 1 6 HELIX 9 13 PRO E 8 THR E 15 1 8 HELIX 10 14 VAL F 11 ILE F 19 1 9 HELIX 11 16 LEU G 30 TYR G 33 5 4 SHEET 1 A 5 LYS A 93 ILE A 104 0 SHEET 2 A 5 CYS A 82 PHE A 88 -1 N PHE A 88 O LYS A 93 SHEET 3 A 5 MET A 63 LEU A 68 -1 N PHE A 65 O VAL A 83 SHEET 4 A 5 ARG A 52 LEU A 58 -1 N VAL A 56 O LEU A 64 SHEET 5 A 5 VAL A 109 GLU A 114 -1 N GLY A 113 O PHE A 55 SHEET 1 B 2 LEU A 77 GLN A 80 0 SHEET 2 B 2 VAL A 67 PHE A 71 -1 N THR A 70 O ILE A 78 SHEET 1 C 5 VAL B 67 TYR B 71 0 SHEET 2 C 5 GLU B 14 LEU B 19 -1 N GLU B 18 O ARG B 68 SHEET 3 C 5 GLU B 24 VAL B 32 -1 N GLY B 27 O VAL B 15 SHEET 4 C 5 LEU B 38 CYS B 45 -1 N CYS B 45 O THR B 28 SHEET 5 C 5 ASN B 59 ILE B 62 -1 N ILE B 62 O LEU B 38 SHEET 1 D 5 GLU C 55 CYS C 63 0 SHEET 2 D 5 ALA C 44 ASN C 52 -1 N ASN C 52 O GLU C 55 SHEET 3 D 5 ARG C 24 THR C 29 -1 N VAL C 27 O VAL C 45 SHEET 4 D 5 ARG C 15 LEU C 20 -1 N LEU C 20 O ARG C 24 SHEET 5 D 5 VAL C 73 THR C 78 -1 N SER C 77 O TYR C 17 SHEET 1 E 3 MET C 65 ILE C 68 0 SHEET 2 E 3 ILE C 39 SER C 42 -1 N LEU C 41 O VAL C 66 SHEET 3 E 3 THR C 29 PHE C 33 -1 N ALA C 32 O VAL C 40 SHEET 1 F 5 VAL D 64 LEU D 66 0 SHEET 2 F 5 VAL D 43 SER D 47 -1 N GLU D 45 O VAL D 64 SHEET 3 F 5 GLU D 23 ILE D 28 -1 N GLN D 26 O THR D 44 SHEET 4 F 5 GLN D 14 LEU D 19 -1 N ILE D 17 O ILE D 25 SHEET 5 F 5 ILE D 76 LEU D 81 -1 N LYS D 80 O GLN D 16 SHEET 1 G 3 GLU D 68 ILE D 71 0 SHEET 2 G 3 LEU D 38 SER D 41 -1 N LEU D 40 O ILE D 69 SHEET 3 G 3 ILE D 28 VAL D 32 -1 N ASN D 31 O THR D 39 SHEET 1 H 5 GLU E 62 GLN E 66 0 SHEET 2 H 5 VAL E 49 LEU E 52 -1 N LEU E 52 O GLU E 62 SHEET 3 H 5 ARG E 28 THR E 33 -1 N GLU E 31 O VAL E 49 SHEET 4 H 5 LYS E 19 LEU E 24 -1 N ILE E 22 O PHE E 30 SHEET 5 H 5 ILE E 78 PRO E 83 -1 N VAL E 82 O LEU E 21 SHEET 1 I 3 ARG E 70 LEU E 73 0 SHEET 2 I 3 VAL E 43 GLU E 46 -1 N LEU E 45 O MET E 71 SHEET 3 I 3 THR E 33 PHE E 37 -1 N GLY E 36 O ILE E 44 SHEET 1 J 4 THR F 53 TYR F 56 0 SHEET 2 J 4 LEU F 32 ARG F 37 -1 N SER F 35 O THR F 53 SHEET 3 J 4 THR F 23 LEU F 28 -1 N VAL F 26 O TYR F 34 SHEET 4 J 4 VAL F 78 GLU F 83 -1 N SER F 82 O ASN F 25 SHEET 1 K 3 VAL F 71 LEU F 73 0 SHEET 2 K 3 VAL F 47 SER F 50 -1 N LEU F 49 O VAL F 71 SHEET 3 K 3 ARG F 37 ILE F 41 -1 N SER F 40 O ALA F 48 SHEET 1 L 5 ALA G 86 ILE G 94 0 SHEET 2 L 5 THR G 66 TYR G 69 -1 N GLU G 68 O ARG G 87 SHEET 3 L 5 LEU G 47 VAL G 51 -1 N ILE G 49 O VAL G 67 SHEET 4 L 5 LYS G 37 LEU G 42 -1 N VAL G 40 O VAL G 48 SHEET 5 L 5 LEU G 99 SER G 104 -1 N SER G 103 O ARG G 39 SHEET 1 M 2 LEU G 61 ASP G 64 0 SHEET 2 M 2 VAL G 51 TYR G 55 -1 N GLY G 54 O VAL G 62 CRYST1 61.796 90.570 68.462 90.00 100.80 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016182 0.000000 0.003087 0.00000 SCALE2 0.000000 0.011041 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014870 0.00000