HEADER LIGASE/SIGNALING PROTEIN 02-OCT-13 4C99 TITLE MOUSE ZNRF3 ECTODOMAIN IN COMPLEX WITH MOUSE RSPO2 FU1-FU2 TITLE 2 CRYSTAL FORM I COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE ZNRF3; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: ECTODOMAIN, RESIDUES 53-205; COMPND 5 SYNONYM: ZINC/RING FINGER PROTEIN 3, ZNRF3; COMPND 6 EC: 6.3.2.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: R-SPONDIN-2; COMPND 10 CHAIN: B, D; COMPND 11 FRAGMENT: FU1-FU2, RESIDUES 37-144; COMPND 12 SYNONYM: CYSTEINE-RICH AND SINGLE THROMBOSPONDIN DOMAIN-CONTAINING COMPND 13 PR; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: TRANSIENT; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHLSEC; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 16 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 18 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 19 EXPRESSION_SYSTEM_VECTOR: TRANSIENT; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PHLSEC KEYWDS LIGASE-SIGNALING PROTEIN COMPLEX, WNT, RNF43, LGR4, LGR5, LGR6, KEYWDS 2 RSPO, R-SPONDIN, R-SPO, RSPO1, RSPO3, RSPO4, RECEPTOR, MEMBRANE, KEYWDS 3 SIGNALLING EXPDTA X-RAY DIFFRACTION AUTHOR M.ZEBISCH,E.Y.JONES REVDAT 2 27-NOV-13 4C99 1 JRNL REVDAT 1 20-NOV-13 4C99 0 JRNL AUTH M.ZEBISCH,Y.XU,C.KRASTEV,B.T.MACDONALD,M.CHEN,R.J.C.GILBERT, JRNL AUTH 2 X.HE,E.Y.JONES JRNL TITL STRUCTURAL AND MOLECULAR BASIS OF ZNRF3/RNF43 TRANSMEMBRANE JRNL TITL 2 UBIQUITIN LIGASE INHIBITION BY THE WNT AGONIST R-SPONDIN. JRNL REF NAT.COMMUN. V. 4 2787 2013 JRNL REFN ISSN 2041-1723 JRNL PMID 24225776 JRNL DOI 10.1038/NCOMMS3787 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU, REMARK 3 STEINER,NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 99.93 REMARK 3 NUMBER OF REFLECTIONS : 14706 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.24050 REMARK 3 R VALUE (WORKING SET) : 0.23616 REMARK 3 FREE R VALUE : 0.32285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 772 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.800 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.873 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1059 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.310 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.483 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3967 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 71.6 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 84.796 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.19 REMARK 3 B22 (A**2) : 5.00 REMARK 3 B33 (A**2) : 0.19 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.478 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.418 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.184 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.875 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4061 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3784 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5482 ; 1.656 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8692 ; 0.825 ; 3.008 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 510 ; 7.704 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 193 ;35.423 ;23.990 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 694 ;20.364 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;19.209 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 580 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4647 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 932 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 4C99 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-OCT-13. REMARK 100 THE PDBE ID CODE IS EBI-58600. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15525 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.80 REMARK 200 RESOLUTION RANGE LOW (A) : 66.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.4 REMARK 200 R MERGE (I) : 0.12 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.00 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.90000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.30550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.60300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.30550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.90000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.60300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 50 REMARK 465 THR A 51 REMARK 465 GLY A 52 REMARK 465 GLY A 206 REMARK 465 THR A 207 REMARK 465 LYS A 208 REMARK 465 HIS A 209 REMARK 465 HIS A 210 REMARK 465 HIS A 211 REMARK 465 HIS A 212 REMARK 465 HIS A 213 REMARK 465 HIS A 214 REMARK 465 GLU B 34 REMARK 465 THR B 35 REMARK 465 GLY B 36 REMARK 465 ASN B 37 REMARK 465 PRO B 38 REMARK 465 VAL B 142 REMARK 465 GLU B 143 REMARK 465 GLY B 144 REMARK 465 THR B 145 REMARK 465 HIS B 146 REMARK 465 HIS B 147 REMARK 465 HIS B 148 REMARK 465 HIS B 149 REMARK 465 HIS B 150 REMARK 465 HIS B 151 REMARK 465 HIS B 152 REMARK 465 HIS B 153 REMARK 465 HIS B 154 REMARK 465 HIS B 155 REMARK 465 GLU C 50 REMARK 465 THR C 51 REMARK 465 GLY C 52 REMARK 465 GLY C 206 REMARK 465 THR C 207 REMARK 465 LYS C 208 REMARK 465 HIS C 209 REMARK 465 HIS C 210 REMARK 465 HIS C 211 REMARK 465 HIS C 212 REMARK 465 HIS C 213 REMARK 465 HIS C 214 REMARK 465 GLU D 34 REMARK 465 THR D 35 REMARK 465 GLY D 36 REMARK 465 ASN D 37 REMARK 465 PRO D 38 REMARK 465 GLY D 144 REMARK 465 THR D 145 REMARK 465 HIS D 146 REMARK 465 HIS D 147 REMARK 465 HIS D 148 REMARK 465 HIS D 149 REMARK 465 HIS D 150 REMARK 465 HIS D 151 REMARK 465 HIS D 152 REMARK 465 HIS D 153 REMARK 465 HIS D 154 REMARK 465 HIS D 155 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE B 39 CG1 CG2 CD1 REMARK 470 ARG B 97 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 107 CG CD CE NZ REMARK 470 LYS B 114 CG CD CE NZ REMARK 470 LEU B 119 CG CD1 CD2 REMARK 470 ILE D 39 CG1 CG2 CD1 REMARK 470 ARG D 54 CG CD NE CZ NH1 NH2 REMARK 470 GLN D 57 CG CD OE1 NE2 REMARK 470 ARG D 97 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 74 CA - CB - SG ANGL. DEV. = -7.1 DEGREES REMARK 500 CYS D 52 CA - CB - SG ANGL. DEV. = 9.4 DEGREES REMARK 500 CYS D 74 CA - CB - SG ANGL. DEV. = -8.2 DEGREES REMARK 500 CYS D 78 CA - CB - SG ANGL. DEV. = -9.3 DEGREES REMARK 500 CYS D 104 CB - CA - C ANGL. DEV. = -11.3 DEGREES REMARK 500 CYS D 128 CA - CB - SG ANGL. DEV. = -9.9 DEGREES REMARK 500 CYS D 141 CA - CB - SG ANGL. DEV. = -9.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 88 70.99 -105.94 REMARK 500 LEU A 101 23.21 -76.17 REMARK 500 LYS A 122 97.72 -68.56 REMARK 500 ARG A 146 5.49 -64.66 REMARK 500 ALA A 150 159.41 178.59 REMARK 500 ASN A 158 72.19 -179.42 REMARK 500 GLN A 167 71.93 -103.09 REMARK 500 SER B 47 140.66 -174.82 REMARK 500 CYS B 55 137.23 -28.25 REMARK 500 ASN B 100 4.15 58.64 REMARK 500 CYS B 128 124.19 -30.43 REMARK 500 SER C 68 0.75 -66.47 REMARK 500 LEU C 103 63.28 -110.61 REMARK 500 GLU C 110 -164.01 -121.57 REMARK 500 ASP C 171 65.95 -117.62 REMARK 500 SER D 47 146.60 -177.11 REMARK 500 ARG D 54 73.97 36.16 REMARK 500 GLN D 57 -124.09 46.17 REMARK 500 PHE D 109 114.14 -164.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 CYS D 141 VAL D 142 -149.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 7-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 8-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 REMARK 700 THE SHEETS PRESENTED AS "CA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 7-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 8-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1206 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4C84 RELATED DB: PDB REMARK 900 ZEBRAFISH ZNRF3 ECTODOMAIN CRYSTAL FORM I REMARK 900 RELATED ID: 4C85 RELATED DB: PDB REMARK 900 ZEBRAFISH ZNRF3 ECTODOMAIN CRYSTAL FORM II REMARK 900 RELATED ID: 4C86 RELATED DB: PDB REMARK 900 MOUSE ZNRF3 ECTODOMAIN CRYSTAL FORM I REMARK 900 RELATED ID: 4C8A RELATED DB: PDB REMARK 900 MOUSE ZNRF3 ECTODOMAIN CRYSTAL FORM II REMARK 900 RELATED ID: 4C8C RELATED DB: PDB REMARK 900 MOUSE ZNRF3 ECTODOMAIN CRYSTAL FORM III REMARK 900 RELATED ID: 4C8F RELATED DB: PDB REMARK 900 MOUSE ZNRF3 ECTODOMAIN CRYSTAL FORM IV REMARK 900 RELATED ID: 4C8P RELATED DB: PDB REMARK 900 MOUSE ZNRF3 ECTODOMAIN CRYSTAL FORM V, DISULFIDE-BRIDGED REMARK 900 S90C VARIANT REMARK 900 RELATED ID: 4C8T RELATED DB: PDB REMARK 900 XENOPUS ZNRF3 ECTODOMAIN CRYSTAL FORM I REMARK 900 RELATED ID: 4C8U RELATED DB: PDB REMARK 900 XENOPUS ZNRF3 ECTODOMAIN CRYSTAL FORM II REMARK 900 RELATED ID: 4C8V RELATED DB: PDB REMARK 900 XENOPUS RSPO2 FU1-FU2 CRYSTAL FORM I REMARK 900 RELATED ID: 4C8W RELATED DB: PDB REMARK 900 XENOPUS RSPO2 FU1-FU2 CRYSTAL FORM II REMARK 900 RELATED ID: 4C9A RELATED DB: PDB REMARK 900 MOUSE ZNRF3 ECTODOMAIN IN COMPLEX WITH XENOPUS RSPO2 REMARK 900 FU1-FU2 (SELENO MET) CRYSTAL FORM I REMARK 900 RELATED ID: 4C9E RELATED DB: PDB REMARK 900 MOUSE ZNRF3 ECTODOMAIN IN COMPLEX WITH XENOPUS RSPO2 REMARK 900 FU1-FU2 (SELENO MET) CRYSTAL FORM II REMARK 900 RELATED ID: 4C9R RELATED DB: PDB REMARK 900 XENOPUS ZNRF3 ECTODOMAIN IN COMPLEX WITH XENOPUS RSPO2 REMARK 900 FU1-FU2 CRYSTAL FORM I REMARK 900 RELATED ID: 4C9U RELATED DB: PDB REMARK 900 XENOPUS ZNRF3 ECTODOMAIN IN COMPLEX WITH XENOPUS RSPO2 REMARK 900 FU1-FU2 CRYSTAL FORM II REMARK 900 RELATED ID: 4C9V RELATED DB: PDB REMARK 900 XENOPUS RNF43 ECTODOMAIN IN COMPLEX WITH XENOPUS RSPO2 REMARK 900 FU1-FU2 DBREF 4C99 A 53 205 UNP Q5SSZ7 ZNRF3_MOUSE 53 205 DBREF 4C99 B 37 144 UNP Q8BFU0 RSPO2_MOUSE 37 144 DBREF 4C99 C 53 205 UNP Q5SSZ7 ZNRF3_MOUSE 53 205 DBREF 4C99 D 37 144 UNP Q8BFU0 RSPO2_MOUSE 37 144 SEQADV 4C99 GLU A 50 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C99 THR A 51 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C99 GLY A 52 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C99 GLY A 206 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C99 THR A 207 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C99 LYS A 208 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C99 HIS A 209 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C99 HIS A 210 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C99 HIS A 211 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C99 HIS A 212 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C99 HIS A 213 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C99 HIS A 214 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C99 GLU B 34 UNP Q8BFU0 EXPRESSION TAG SEQADV 4C99 THR B 35 UNP Q8BFU0 EXPRESSION TAG SEQADV 4C99 GLY B 36 UNP Q8BFU0 EXPRESSION TAG SEQADV 4C99 THR B 145 UNP Q8BFU0 EXPRESSION TAG SEQADV 4C99 HIS B 146 UNP Q8BFU0 EXPRESSION TAG SEQADV 4C99 HIS B 147 UNP Q8BFU0 EXPRESSION TAG SEQADV 4C99 HIS B 148 UNP Q8BFU0 EXPRESSION TAG SEQADV 4C99 HIS B 149 UNP Q8BFU0 EXPRESSION TAG SEQADV 4C99 HIS B 150 UNP Q8BFU0 EXPRESSION TAG SEQADV 4C99 HIS B 151 UNP Q8BFU0 EXPRESSION TAG SEQADV 4C99 HIS B 152 UNP Q8BFU0 EXPRESSION TAG SEQADV 4C99 HIS B 153 UNP Q8BFU0 EXPRESSION TAG SEQADV 4C99 HIS B 154 UNP Q8BFU0 EXPRESSION TAG SEQADV 4C99 HIS B 155 UNP Q8BFU0 EXPRESSION TAG SEQADV 4C99 GLU C 50 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C99 THR C 51 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C99 GLY C 52 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C99 GLY C 206 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C99 THR C 207 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C99 LYS C 208 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C99 HIS C 209 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C99 HIS C 210 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C99 HIS C 211 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C99 HIS C 212 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C99 HIS C 213 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C99 HIS C 214 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4C99 GLU D 34 UNP Q8BFU0 EXPRESSION TAG SEQADV 4C99 THR D 35 UNP Q8BFU0 EXPRESSION TAG SEQADV 4C99 GLY D 36 UNP Q8BFU0 EXPRESSION TAG SEQADV 4C99 THR D 145 UNP Q8BFU0 EXPRESSION TAG SEQADV 4C99 HIS D 146 UNP Q8BFU0 EXPRESSION TAG SEQADV 4C99 HIS D 147 UNP Q8BFU0 EXPRESSION TAG SEQADV 4C99 HIS D 148 UNP Q8BFU0 EXPRESSION TAG SEQADV 4C99 HIS D 149 UNP Q8BFU0 EXPRESSION TAG SEQADV 4C99 HIS D 150 UNP Q8BFU0 EXPRESSION TAG SEQADV 4C99 HIS D 151 UNP Q8BFU0 EXPRESSION TAG SEQADV 4C99 HIS D 152 UNP Q8BFU0 EXPRESSION TAG SEQADV 4C99 HIS D 153 UNP Q8BFU0 EXPRESSION TAG SEQADV 4C99 HIS D 154 UNP Q8BFU0 EXPRESSION TAG SEQADV 4C99 HIS D 155 UNP Q8BFU0 EXPRESSION TAG SEQRES 1 A 165 GLU THR GLY LYS GLU THR ALA PHE VAL GLU VAL VAL LEU SEQRES 2 A 165 PHE GLU SER SER PRO SER GLY ASP TYR THR THR HIS THR SEQRES 3 A 165 THR GLY LEU THR GLY ARG PHE SER ARG ALA GLY ALA MET SEQRES 4 A 165 LEU SER ALA GLU GLY GLU ILE VAL GLN MET HIS PRO LEU SEQRES 5 A 165 GLY LEU CYS ASN ASN ASN ASP GLU GLU ASP LEU TYR GLU SEQRES 6 A 165 TYR GLY TRP VAL GLY VAL VAL LYS LEU GLU GLN PRO GLU SEQRES 7 A 165 LEU ASP PRO LYS PRO CYS LEU THR VAL LEU GLY LYS ALA SEQRES 8 A 165 LYS ARG ALA VAL GLN ARG GLY ALA THR ALA VAL ILE PHE SEQRES 9 A 165 ASP VAL SER GLU ASN PRO GLU ALA ILE ASP GLN LEU ASN SEQRES 10 A 165 GLN GLY SER GLU ASP PRO LEU LYS ARG PRO VAL VAL TYR SEQRES 11 A 165 VAL LYS GLY ALA ASP ALA ILE LYS LEU MET ASN ILE VAL SEQRES 12 A 165 ASN LYS GLN LYS VAL ALA ARG ALA ARG ILE GLN HIS LEU SEQRES 13 A 165 GLY THR LYS HIS HIS HIS HIS HIS HIS SEQRES 1 C 165 GLU THR GLY LYS GLU THR ALA PHE VAL GLU VAL VAL LEU SEQRES 2 C 165 PHE GLU SER SER PRO SER GLY ASP TYR THR THR HIS THR SEQRES 3 C 165 THR GLY LEU THR GLY ARG PHE SER ARG ALA GLY ALA MET SEQRES 4 C 165 LEU SER ALA GLU GLY GLU ILE VAL GLN MET HIS PRO LEU SEQRES 5 C 165 GLY LEU CYS ASN ASN ASN ASP GLU GLU ASP LEU TYR GLU SEQRES 6 C 165 TYR GLY TRP VAL GLY VAL VAL LYS LEU GLU GLN PRO GLU SEQRES 7 C 165 LEU ASP PRO LYS PRO CYS LEU THR VAL LEU GLY LYS ALA SEQRES 8 C 165 LYS ARG ALA VAL GLN ARG GLY ALA THR ALA VAL ILE PHE SEQRES 9 C 165 ASP VAL SER GLU ASN PRO GLU ALA ILE ASP GLN LEU ASN SEQRES 10 C 165 GLN GLY SER GLU ASP PRO LEU LYS ARG PRO VAL VAL TYR SEQRES 11 C 165 VAL LYS GLY ALA ASP ALA ILE LYS LEU MET ASN ILE VAL SEQRES 12 C 165 ASN LYS GLN LYS VAL ALA ARG ALA ARG ILE GLN HIS LEU SEQRES 13 C 165 GLY THR LYS HIS HIS HIS HIS HIS HIS SEQRES 1 B 122 GLU THR GLY ASN PRO ILE CYS LYS GLY CYS LEU SER CYS SEQRES 2 B 122 SER LYS ASP ASN GLY CYS SER ARG CYS GLN GLN LYS LEU SEQRES 3 B 122 PHE PHE PHE LEU ARG ARG GLU GLY MET ARG GLN TYR GLY SEQRES 4 B 122 GLU CYS LEU HIS SER CYS PRO SER GLY TYR TYR GLY HIS SEQRES 5 B 122 ARG ALA PRO ASP MET ASN ARG CYS ALA ARG CYS ARG ILE SEQRES 6 B 122 GLU ASN CYS ASP SER CYS PHE SER LYS ASP PHE CYS THR SEQRES 7 B 122 LYS CYS LYS VAL GLY PHE TYR LEU HIS ARG GLY ARG CYS SEQRES 8 B 122 PHE ASP GLU CYS PRO ASP GLY PHE ALA PRO LEU ASP GLU SEQRES 9 B 122 THR MET GLU CYS VAL GLU GLY THR HIS HIS HIS HIS HIS SEQRES 10 B 122 HIS HIS HIS HIS HIS SEQRES 1 D 122 GLU THR GLY ASN PRO ILE CYS LYS GLY CYS LEU SER CYS SEQRES 2 D 122 SER LYS ASP ASN GLY CYS SER ARG CYS GLN GLN LYS LEU SEQRES 3 D 122 PHE PHE PHE LEU ARG ARG GLU GLY MET ARG GLN TYR GLY SEQRES 4 D 122 GLU CYS LEU HIS SER CYS PRO SER GLY TYR TYR GLY HIS SEQRES 5 D 122 ARG ALA PRO ASP MET ASN ARG CYS ALA ARG CYS ARG ILE SEQRES 6 D 122 GLU ASN CYS ASP SER CYS PHE SER LYS ASP PHE CYS THR SEQRES 7 D 122 LYS CYS LYS VAL GLY PHE TYR LEU HIS ARG GLY ARG CYS SEQRES 8 D 122 PHE ASP GLU CYS PRO ASP GLY PHE ALA PRO LEU ASP GLU SEQRES 9 D 122 THR MET GLU CYS VAL GLU GLY THR HIS HIS HIS HIS HIS SEQRES 10 D 122 HIS HIS HIS HIS HIS HET CL A1206 1 HETNAM CL CHLORIDE ION FORMUL 5 CL CL 1- HELIX 1 1 HIS A 99 LEU A 103 5 5 HELIX 2 2 GLN A 125 ASP A 129 5 5 HELIX 3 3 THR A 135 ARG A 146 1 12 HELIX 4 4 PRO A 159 GLN A 167 1 9 HELIX 5 5 LYS A 181 GLN A 195 1 15 HELIX 6 6 HIS C 99 LEU C 103 5 5 HELIX 7 7 GLN C 125 ASP C 129 5 5 HELIX 8 8 THR C 135 ARG C 146 1 12 HELIX 9 9 GLU C 160 ASN C 166 1 7 HELIX 10 10 GLN C 167 SER C 169 5 3 HELIX 11 11 LYS C 181 GLN C 195 1 15 SHEET 1 AA 8 THR A 55 SER A 65 0 SHEET 2 AA 8 TYR A 71 PHE A 82 -1 O THR A 72 N GLU A 64 SHEET 3 AA 8 VAL A 177 VAL A 180 -1 O TYR A 179 N ARG A 81 SHEET 4 AA 8 ALA A 150 ASP A 154 1 O VAL A 151 N VAL A 178 SHEET 5 AA 8 VAL A 118 LYS A 122 1 O GLY A 119 N ILE A 152 SHEET 6 AA 8 ALA A 91 GLN A 97 1 O GLU A 94 N VAL A 118 SHEET 7 AA 8 ARG A 199 GLN A 203 -1 O ALA A 200 N GLY A 93 SHEET 8 AA 8 THR A 55 SER A 65 -1 O PHE A 57 N GLN A 203 SHEET 1 BA 2 CYS B 43 SER B 45 0 SHEET 2 BA 2 SER B 53 CYS B 55 -1 O SER B 53 N SER B 45 SHEET 1 BB 2 PHE B 60 GLU B 66 0 SHEET 2 BB 2 ARG B 69 LEU B 75 -1 O ARG B 69 N GLU B 66 SHEET 1 BC 2 TYR B 82 TYR B 83 0 SHEET 2 BC 2 ALA B 94 ARG B 95 -1 O ALA B 94 N TYR B 83 SHEET 1 BD 2 TYR B 118 HIS B 120 0 SHEET 2 BD 2 ARG B 123 PHE B 125 -1 O ARG B 123 N HIS B 120 SHEET 1 CA 8 THR C 55 SER C 65 0 SHEET 2 CA 8 TYR C 71 PHE C 82 -1 O THR C 72 N GLU C 64 SHEET 3 CA 8 VAL C 177 VAL C 180 -1 O TYR C 179 N ARG C 81 SHEET 4 CA 8 ALA C 148 ASP C 154 1 O VAL C 151 N VAL C 178 SHEET 5 CA 8 TRP C 117 LYS C 122 1 O TRP C 117 N THR C 149 SHEET 6 CA 8 ALA C 91 GLN C 97 1 O GLU C 94 N VAL C 118 SHEET 7 CA 8 ARG C 199 HIS C 204 -1 O ALA C 200 N GLY C 93 SHEET 8 CA 8 THR C 55 SER C 65 -1 O PHE C 57 N GLN C 203 SHEET 1 DA 2 CYS D 43 SER D 47 0 SHEET 2 DA 2 GLY D 51 CYS D 55 -1 O GLY D 51 N SER D 47 SHEET 1 DB 2 PHE D 60 PHE D 61 0 SHEET 2 DB 2 CYS D 74 LEU D 75 -1 O LEU D 75 N PHE D 60 SHEET 1 DC 2 ARG D 64 GLU D 66 0 SHEET 2 DC 2 ARG D 69 TYR D 71 -1 O ARG D 69 N GLU D 66 SHEET 1 DD 2 TYR D 82 ARG D 86 0 SHEET 2 DD 2 ASN D 91 ARG D 95 -1 O ARG D 92 N HIS D 85 SHEET 1 DE 2 CYS D 101 SER D 106 0 SHEET 2 DE 2 PHE D 109 CYS D 113 -1 O PHE D 109 N PHE D 105 SHEET 1 DF 2 TYR D 118 HIS D 120 0 SHEET 2 DF 2 ARG D 123 PHE D 125 -1 O ARG D 123 N HIS D 120 SHEET 1 DG 2 ALA D 133 LEU D 135 0 SHEET 2 DG 2 GLU D 140 VAL D 142 -1 O GLU D 140 N LEU D 135 SSBOND 1 CYS A 104 CYS A 133 1555 1555 2.06 SSBOND 2 CYS B 40 CYS B 46 1555 1555 2.01 SSBOND 3 CYS B 43 CYS B 52 1555 1555 2.03 SSBOND 4 CYS B 55 CYS B 74 1555 1555 1.99 SSBOND 5 CYS B 78 CYS B 93 1555 1555 2.04 SSBOND 6 CYS B 96 CYS B 104 1555 1555 2.04 SSBOND 7 CYS B 101 CYS B 110 1555 1555 1.98 SSBOND 8 CYS B 113 CYS B 124 1555 1555 2.06 SSBOND 9 CYS B 128 CYS B 141 1555 1555 2.02 SSBOND 10 CYS C 104 CYS C 133 1555 1555 2.03 SSBOND 11 CYS D 40 CYS D 46 1555 1555 2.02 SSBOND 12 CYS D 43 CYS D 52 1555 1555 2.01 SSBOND 13 CYS D 55 CYS D 74 1555 1555 2.00 SSBOND 14 CYS D 78 CYS D 93 1555 1555 1.95 SSBOND 15 CYS D 96 CYS D 104 1555 1555 1.98 SSBOND 16 CYS D 101 CYS D 110 1555 1555 2.04 SSBOND 17 CYS D 113 CYS D 124 1555 1555 2.04 SSBOND 18 CYS D 128 CYS D 141 1555 1555 1.96 SITE 1 AC1 2 ARG A 199 ARG C 199 CRYST1 59.800 77.206 130.611 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016722 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012952 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007656 0.00000 MTRIX1 1 -0.998000 0.042000 -0.053000 4.31500 1 MTRIX2 1 -0.044000 -0.998000 0.039000 0.48800 1 MTRIX3 1 -0.052000 0.041000 0.998000 -0.14100 1