HEADER ALLERGEN 02-OCT-13 4C9I TITLE CRYSTAL STRUCTURE OF THE STRAWBERRY PATHOGENESIS-RELATED 10 (PR-10) TITLE 2 FRA A 1E PROTEIN (FORM B) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR STRAWBERRY ALLERGEN FRA A 1-E; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 SYNONYM: FRA A 1E; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FRAGARIA X ANANASSA; SOURCE 3 ORGANISM_COMMON: STRAWBERRY; SOURCE 4 ORGANISM_TAXID: 3747; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PETM11 KEYWDS ALLERGEN, PYR/PYL/RCAR, BET V 1, FLAVONOIDS, CATECHIN EXPDTA X-RAY DIFFRACTION AUTHOR A.CASANAL,U.ZANDER,V.VALPUESTA,J.A.MARQUEZ REVDAT 5 20-DEC-23 4C9I 1 REMARK REVDAT 4 25-DEC-13 4C9I 1 JRNL REVDAT 3 30-OCT-13 4C9I 1 JRNL REVDAT 2 23-OCT-13 4C9I 1 JRNL REVDAT 1 16-OCT-13 4C9I 0 JRNL AUTH A.CASANAL,U.ZANDER,C.MUNOZ,F.DUPEUX,I.LUQUE,M.A.BOTELLA, JRNL AUTH 2 W.SCHWAB,V.VALPUESTA,J.A.MARQUEZ JRNL TITL THE STRAWBERRY PATHOGENESIS-RELATED 10 (PR-10) FRA A JRNL TITL 2 PROTEINS CONTROL FLAVONOID BIOSYNTHESIS BY BINDING TO JRNL TITL 3 METABOLIC INTERMEDIATES. JRNL REF J.BIOL.CHEM. V. 288 35322 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 24133217 JRNL DOI 10.1074/JBC.M113.501528 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 25686 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1375 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1895 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.2850 REMARK 3 BIN FREE R VALUE SET COUNT : 102 REMARK 3 BIN FREE R VALUE : 0.3670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7567 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 23 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.459 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.347 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.733 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.908 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.859 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7778 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 7411 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10501 ; 1.518 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 17261 ; 0.783 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 961 ; 7.571 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 322 ;37.313 ;25.559 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1382 ;16.594 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1147 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8608 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1598 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4C9I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1290058571. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87260 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27085 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 29.89 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4C9C REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRI-SODIUM CITRATE DIHYDRATE, REMARK 280 0.1M TRIS HYDROCHLORIDE PH 8.5 AND 5% PEG 400 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.86700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 112.33200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.22950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 112.33200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.86700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.22950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU E 61 REMARK 465 GLY E 62 REMARK 465 SER E 63 REMARK 465 HIS E 64 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU B 139 O94 KXN F 1161 4455 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 35 59.03 -157.83 REMARK 500 GLU A 88 132.92 -175.09 REMARK 500 SER A 93 -177.19 -171.26 REMARK 500 VAL B 39 142.61 -176.63 REMARK 500 LYS B 40 -79.12 -129.46 REMARK 500 SER B 93 -175.62 -170.11 REMARK 500 LYS B 98 147.24 -170.46 REMARK 500 PRO B 156 1.08 -62.45 REMARK 500 GLN C 37 6.20 58.85 REMARK 500 ALA D 35 55.26 -148.55 REMARK 500 ALA D 38 -80.84 -104.66 REMARK 500 GLU D 61 -158.93 -121.28 REMARK 500 SER D 63 -134.81 47.37 REMARK 500 HIS D 64 -44.67 -138.75 REMARK 500 VAL E 24 -60.96 -106.88 REMARK 500 ASP E 26 52.17 -115.59 REMARK 500 LYS E 40 -74.24 -130.52 REMARK 500 ALA E 42 117.60 -161.76 REMARK 500 HIS E 155 57.43 -144.73 REMARK 500 HIS F 80 45.25 74.18 REMARK 500 HIS F 155 56.61 -151.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 89 ASP A 90 -143.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE KXN F 1161 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 1161 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL E 1161 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4C94 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE STRAWBERRY PATHOGENESIS-RELATED 10 (PR-10) REMARK 900 FRA A 3 PROTEIN IN COMPLEX WITH CATECHIN REMARK 900 RELATED ID: 4C9C RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE STRAWBERRY PATHOGENESIS-RELATED 10 (PR-10) REMARK 900 FRA A 1E PROTEIN (FORM A) DBREF 4C9I A 2 160 UNP Q256S2 Q256S2_FRAAN 2 160 DBREF 4C9I B 2 160 UNP Q256S2 Q256S2_FRAAN 2 160 DBREF 4C9I C 2 160 UNP Q256S2 Q256S2_FRAAN 2 160 DBREF 4C9I D 2 160 UNP Q256S2 Q256S2_FRAAN 2 160 DBREF 4C9I E 2 160 UNP Q256S2 Q256S2_FRAAN 2 160 DBREF 4C9I F 2 160 UNP Q256S2 Q256S2_FRAAN 2 160 SEQADV 4C9I ALA A -1 UNP Q256S2 EXPRESSION TAG SEQADV 4C9I MET A 0 UNP Q256S2 EXPRESSION TAG SEQADV 4C9I ALA A 1 UNP Q256S2 EXPRESSION TAG SEQADV 4C9I ALA B -1 UNP Q256S2 EXPRESSION TAG SEQADV 4C9I MET B 0 UNP Q256S2 EXPRESSION TAG SEQADV 4C9I ALA B 1 UNP Q256S2 EXPRESSION TAG SEQADV 4C9I ALA C -1 UNP Q256S2 EXPRESSION TAG SEQADV 4C9I MET C 0 UNP Q256S2 EXPRESSION TAG SEQADV 4C9I ALA C 1 UNP Q256S2 EXPRESSION TAG SEQADV 4C9I ALA D -1 UNP Q256S2 EXPRESSION TAG SEQADV 4C9I MET D 0 UNP Q256S2 EXPRESSION TAG SEQADV 4C9I ALA D 1 UNP Q256S2 EXPRESSION TAG SEQADV 4C9I ALA E -1 UNP Q256S2 EXPRESSION TAG SEQADV 4C9I MET E 0 UNP Q256S2 EXPRESSION TAG SEQADV 4C9I ALA E 1 UNP Q256S2 EXPRESSION TAG SEQADV 4C9I ALA F -1 UNP Q256S2 EXPRESSION TAG SEQADV 4C9I MET F 0 UNP Q256S2 EXPRESSION TAG SEQADV 4C9I ALA F 1 UNP Q256S2 EXPRESSION TAG SEQRES 1 A 162 ALA MET ALA GLY VAL TYR THR TYR GLU ASN GLU PHE THR SEQRES 2 A 162 SER ASP ILE PRO ALA PRO LYS LEU PHE LYS ALA PHE VAL SEQRES 3 A 162 LEU ASP ALA ASP ASN LEU ILE PRO LYS ILE ALA PRO GLN SEQRES 4 A 162 ALA VAL LYS CYS ALA GLU ILE LEU GLU GLY ASP GLY GLY SEQRES 5 A 162 PRO GLY THR ILE LYS LYS ILE THR PHE GLY GLU GLY SER SEQRES 6 A 162 HIS TYR GLY TYR VAL LYS HIS LYS ILE HIS SER ILE ASP SEQRES 7 A 162 LYS VAL ASN HIS THR TYR SER TYR SER LEU ILE GLU GLY SEQRES 8 A 162 ASP ALA LEU SER GLU ASN ILE GLU LYS ILE ASP TYR GLU SEQRES 9 A 162 THR LYS LEU VAL SER ALA PRO HIS GLY GLY THR ILE ILE SEQRES 10 A 162 LYS THR THR SER LYS TYR HIS THR LYS GLY ASP VAL GLU SEQRES 11 A 162 ILE LYS GLU GLU HIS VAL LYS ALA GLY LYS GLU LYS ALA SEQRES 12 A 162 ALA HIS LEU PHE LYS LEU ILE GLU GLY TYR LEU LYS ASP SEQRES 13 A 162 HIS PRO SER GLU TYR ASN SEQRES 1 B 162 ALA MET ALA GLY VAL TYR THR TYR GLU ASN GLU PHE THR SEQRES 2 B 162 SER ASP ILE PRO ALA PRO LYS LEU PHE LYS ALA PHE VAL SEQRES 3 B 162 LEU ASP ALA ASP ASN LEU ILE PRO LYS ILE ALA PRO GLN SEQRES 4 B 162 ALA VAL LYS CYS ALA GLU ILE LEU GLU GLY ASP GLY GLY SEQRES 5 B 162 PRO GLY THR ILE LYS LYS ILE THR PHE GLY GLU GLY SER SEQRES 6 B 162 HIS TYR GLY TYR VAL LYS HIS LYS ILE HIS SER ILE ASP SEQRES 7 B 162 LYS VAL ASN HIS THR TYR SER TYR SER LEU ILE GLU GLY SEQRES 8 B 162 ASP ALA LEU SER GLU ASN ILE GLU LYS ILE ASP TYR GLU SEQRES 9 B 162 THR LYS LEU VAL SER ALA PRO HIS GLY GLY THR ILE ILE SEQRES 10 B 162 LYS THR THR SER LYS TYR HIS THR LYS GLY ASP VAL GLU SEQRES 11 B 162 ILE LYS GLU GLU HIS VAL LYS ALA GLY LYS GLU LYS ALA SEQRES 12 B 162 ALA HIS LEU PHE LYS LEU ILE GLU GLY TYR LEU LYS ASP SEQRES 13 B 162 HIS PRO SER GLU TYR ASN SEQRES 1 C 162 ALA MET ALA GLY VAL TYR THR TYR GLU ASN GLU PHE THR SEQRES 2 C 162 SER ASP ILE PRO ALA PRO LYS LEU PHE LYS ALA PHE VAL SEQRES 3 C 162 LEU ASP ALA ASP ASN LEU ILE PRO LYS ILE ALA PRO GLN SEQRES 4 C 162 ALA VAL LYS CYS ALA GLU ILE LEU GLU GLY ASP GLY GLY SEQRES 5 C 162 PRO GLY THR ILE LYS LYS ILE THR PHE GLY GLU GLY SER SEQRES 6 C 162 HIS TYR GLY TYR VAL LYS HIS LYS ILE HIS SER ILE ASP SEQRES 7 C 162 LYS VAL ASN HIS THR TYR SER TYR SER LEU ILE GLU GLY SEQRES 8 C 162 ASP ALA LEU SER GLU ASN ILE GLU LYS ILE ASP TYR GLU SEQRES 9 C 162 THR LYS LEU VAL SER ALA PRO HIS GLY GLY THR ILE ILE SEQRES 10 C 162 LYS THR THR SER LYS TYR HIS THR LYS GLY ASP VAL GLU SEQRES 11 C 162 ILE LYS GLU GLU HIS VAL LYS ALA GLY LYS GLU LYS ALA SEQRES 12 C 162 ALA HIS LEU PHE LYS LEU ILE GLU GLY TYR LEU LYS ASP SEQRES 13 C 162 HIS PRO SER GLU TYR ASN SEQRES 1 D 162 ALA MET ALA GLY VAL TYR THR TYR GLU ASN GLU PHE THR SEQRES 2 D 162 SER ASP ILE PRO ALA PRO LYS LEU PHE LYS ALA PHE VAL SEQRES 3 D 162 LEU ASP ALA ASP ASN LEU ILE PRO LYS ILE ALA PRO GLN SEQRES 4 D 162 ALA VAL LYS CYS ALA GLU ILE LEU GLU GLY ASP GLY GLY SEQRES 5 D 162 PRO GLY THR ILE LYS LYS ILE THR PHE GLY GLU GLY SER SEQRES 6 D 162 HIS TYR GLY TYR VAL LYS HIS LYS ILE HIS SER ILE ASP SEQRES 7 D 162 LYS VAL ASN HIS THR TYR SER TYR SER LEU ILE GLU GLY SEQRES 8 D 162 ASP ALA LEU SER GLU ASN ILE GLU LYS ILE ASP TYR GLU SEQRES 9 D 162 THR LYS LEU VAL SER ALA PRO HIS GLY GLY THR ILE ILE SEQRES 10 D 162 LYS THR THR SER LYS TYR HIS THR LYS GLY ASP VAL GLU SEQRES 11 D 162 ILE LYS GLU GLU HIS VAL LYS ALA GLY LYS GLU LYS ALA SEQRES 12 D 162 ALA HIS LEU PHE LYS LEU ILE GLU GLY TYR LEU LYS ASP SEQRES 13 D 162 HIS PRO SER GLU TYR ASN SEQRES 1 E 162 ALA MET ALA GLY VAL TYR THR TYR GLU ASN GLU PHE THR SEQRES 2 E 162 SER ASP ILE PRO ALA PRO LYS LEU PHE LYS ALA PHE VAL SEQRES 3 E 162 LEU ASP ALA ASP ASN LEU ILE PRO LYS ILE ALA PRO GLN SEQRES 4 E 162 ALA VAL LYS CYS ALA GLU ILE LEU GLU GLY ASP GLY GLY SEQRES 5 E 162 PRO GLY THR ILE LYS LYS ILE THR PHE GLY GLU GLY SER SEQRES 6 E 162 HIS TYR GLY TYR VAL LYS HIS LYS ILE HIS SER ILE ASP SEQRES 7 E 162 LYS VAL ASN HIS THR TYR SER TYR SER LEU ILE GLU GLY SEQRES 8 E 162 ASP ALA LEU SER GLU ASN ILE GLU LYS ILE ASP TYR GLU SEQRES 9 E 162 THR LYS LEU VAL SER ALA PRO HIS GLY GLY THR ILE ILE SEQRES 10 E 162 LYS THR THR SER LYS TYR HIS THR LYS GLY ASP VAL GLU SEQRES 11 E 162 ILE LYS GLU GLU HIS VAL LYS ALA GLY LYS GLU LYS ALA SEQRES 12 E 162 ALA HIS LEU PHE LYS LEU ILE GLU GLY TYR LEU LYS ASP SEQRES 13 E 162 HIS PRO SER GLU TYR ASN SEQRES 1 F 162 ALA MET ALA GLY VAL TYR THR TYR GLU ASN GLU PHE THR SEQRES 2 F 162 SER ASP ILE PRO ALA PRO LYS LEU PHE LYS ALA PHE VAL SEQRES 3 F 162 LEU ASP ALA ASP ASN LEU ILE PRO LYS ILE ALA PRO GLN SEQRES 4 F 162 ALA VAL LYS CYS ALA GLU ILE LEU GLU GLY ASP GLY GLY SEQRES 5 F 162 PRO GLY THR ILE LYS LYS ILE THR PHE GLY GLU GLY SER SEQRES 6 F 162 HIS TYR GLY TYR VAL LYS HIS LYS ILE HIS SER ILE ASP SEQRES 7 F 162 LYS VAL ASN HIS THR TYR SER TYR SER LEU ILE GLU GLY SEQRES 8 F 162 ASP ALA LEU SER GLU ASN ILE GLU LYS ILE ASP TYR GLU SEQRES 9 F 162 THR LYS LEU VAL SER ALA PRO HIS GLY GLY THR ILE ILE SEQRES 10 F 162 LYS THR THR SER LYS TYR HIS THR LYS GLY ASP VAL GLU SEQRES 11 F 162 ILE LYS GLU GLU HIS VAL LYS ALA GLY LYS GLU LYS ALA SEQRES 12 F 162 ALA HIS LEU PHE LYS LEU ILE GLU GLY TYR LEU LYS ASP SEQRES 13 F 162 HIS PRO SER GLU TYR ASN HET GOL C1161 6 HET GOL E1161 6 HET KXN F1161 21 HETNAM GOL GLYCEROL HETNAM KXN (2R,3S)-2-(3,4-DIHYDROXYPHENYL)-3,4-DIHYDRO-2H- HETNAM 2 KXN CHROMENE-3,5,7-TRIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 7 GOL 2(C3 H8 O3) FORMUL 9 KXN C15 H14 O6 FORMUL 10 HOH *23(H2 O) HELIX 1 1 PRO A 15 VAL A 24 1 10 HELIX 2 2 ASP A 26 ALA A 35 1 10 HELIX 3 3 LYS A 130 ASP A 154 1 25 HELIX 4 4 PRO B 15 VAL B 24 1 10 HELIX 5 5 ASP B 26 ALA B 35 1 10 HELIX 6 6 LYS B 130 HIS B 155 1 26 HELIX 7 7 PRO C 15 PHE C 23 1 9 HELIX 8 8 ASP C 26 ALA C 35 1 10 HELIX 9 9 LYS C 130 HIS C 155 1 26 HELIX 10 10 PRO D 15 VAL D 24 1 10 HELIX 11 11 ASP D 26 ALA D 35 1 10 HELIX 12 12 LYS D 130 ASP D 154 1 25 HELIX 13 13 PRO E 15 VAL E 24 1 10 HELIX 14 14 ASP E 26 ALA E 35 1 10 HELIX 15 15 LYS E 130 ASP E 154 1 25 HELIX 16 16 PRO F 15 VAL F 24 1 10 HELIX 17 17 ASP F 26 ALA F 35 1 10 HELIX 18 18 LYS F 130 ASP F 154 1 25 SHEET 1 AA 7 ALA A 1 SER A 12 0 SHEET 2 AA 7 THR A 113 LYS A 124 -1 O THR A 113 N SER A 12 SHEET 3 AA 7 ILE A 96 SER A 107 -1 N GLU A 97 O HIS A 122 SHEET 4 AA 7 THR A 81 GLY A 89 -1 O TYR A 82 N THR A 103 SHEET 5 AA 7 TYR A 67 ASP A 76 -1 O LYS A 69 N ILE A 87 SHEET 6 AA 7 ILE A 54 PHE A 59 -1 O LYS A 55 N HIS A 70 SHEET 7 AA 7 VAL A 39 GLU A 46 -1 N LYS A 40 O THR A 58 SHEET 1 BA 7 ALA B 1 SER B 12 0 SHEET 2 BA 7 THR B 113 LYS B 124 -1 O THR B 113 N SER B 12 SHEET 3 BA 7 ILE B 96 SER B 107 -1 N GLU B 97 O HIS B 122 SHEET 4 BA 7 THR B 81 GLU B 88 -1 O TYR B 82 N THR B 103 SHEET 5 BA 7 GLY B 66 ASP B 76 -1 O LYS B 69 N ILE B 87 SHEET 6 BA 7 ILE B 54 PHE B 59 -1 O LYS B 55 N HIS B 70 SHEET 7 BA 7 ALA B 42 GLU B 46 -1 O GLU B 43 N LYS B 56 SHEET 1 CA 7 ALA C 1 SER C 12 0 SHEET 2 CA 7 GLY C 112 LYS C 124 -1 O THR C 113 N SER C 12 SHEET 3 CA 7 LYS C 98 ALA C 108 -1 O LYS C 98 N HIS C 122 SHEET 4 CA 7 THR C 81 GLY C 89 -1 O TYR C 82 N THR C 103 SHEET 5 CA 7 TYR C 67 ASP C 76 -1 O LYS C 69 N ILE C 87 SHEET 6 CA 7 ILE C 54 PHE C 59 -1 O LYS C 55 N HIS C 70 SHEET 7 CA 7 VAL C 39 GLU C 46 -1 N LYS C 40 O THR C 58 SHEET 1 DA 7 VAL D 3 SER D 12 0 SHEET 2 DA 7 THR D 113 THR D 123 -1 O THR D 113 N SER D 12 SHEET 3 DA 7 ILE D 96 SER D 107 -1 N GLU D 97 O HIS D 122 SHEET 4 DA 7 THR D 81 GLU D 88 -1 O TYR D 82 N THR D 103 SHEET 5 DA 7 TYR D 67 ASP D 76 -1 O LYS D 69 N ILE D 87 SHEET 6 DA 7 ILE D 54 PHE D 59 -1 O LYS D 55 N HIS D 70 SHEET 7 DA 7 VAL D 39 ILE D 44 -1 N LYS D 40 O THR D 58 SHEET 1 EA 5 GLY E 2 SER E 12 0 SHEET 2 EA 5 THR E 113 THR E 123 -1 O THR E 113 N SER E 12 SHEET 3 EA 5 ILE E 96 SER E 107 -1 N GLU E 97 O HIS E 122 SHEET 4 EA 5 THR E 81 GLU E 88 -1 O TYR E 82 N THR E 103 SHEET 5 EA 5 LYS E 69 ASP E 76 -1 O LYS E 69 N ILE E 87 SHEET 1 EB 2 VAL E 39 ILE E 44 0 SHEET 2 EB 2 LYS E 55 PHE E 59 -1 O LYS E 56 N GLU E 43 SHEET 1 FA 7 ALA F 1 SER F 12 0 SHEET 2 FA 7 THR F 113 LYS F 124 -1 O THR F 113 N SER F 12 SHEET 3 FA 7 ILE F 96 SER F 107 -1 N GLU F 97 O HIS F 122 SHEET 4 FA 7 THR F 81 GLU F 88 -1 O TYR F 82 N THR F 103 SHEET 5 FA 7 TYR F 67 ASP F 76 -1 O LYS F 69 N ILE F 87 SHEET 6 FA 7 ILE F 54 THR F 58 -1 O LYS F 55 N HIS F 70 SHEET 7 FA 7 CYS F 41 ILE F 44 -1 O CYS F 41 N THR F 58 CISPEP 1 PRO A 109 HIS A 110 0 -13.92 CISPEP 2 GLY B 60 GLU B 61 0 6.95 CISPEP 3 PRO C 109 HIS C 110 0 -18.87 SITE 1 AC1 7 GLU B 139 LYS B 140 HIS F 143 LYS F 146 SITE 2 AC1 7 LEU F 147 GLY F 150 ASP F 154 SITE 1 AC2 2 TYR C 84 ALA C 141 SITE 1 AC3 2 ILE E 57 LYS E 140 CRYST1 81.734 82.459 224.664 90.00 90.00 90.00 P 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012235 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012127 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004451 0.00000 MTRIX1 1 -0.994900 0.011800 0.099900 -3.87690 1 MTRIX2 1 -0.045100 0.835200 -0.548100 3.89650 1 MTRIX3 1 -0.089900 -0.549800 -0.830400 13.63390 1 MTRIX1 2 -0.000800 -0.999900 0.017300 41.22750 1 MTRIX2 2 -0.931500 -0.005500 -0.363700 -0.57250 1 MTRIX3 2 0.363800 -0.016400 -0.931300 -51.18990 1 MTRIX1 3 0.003500 0.995100 -0.098700 -49.37930 1 MTRIX2 3 -0.987600 0.018900 0.155700 27.90290 1 MTRIX3 3 0.156800 0.097000 0.982800 53.42430 1 MTRIX1 4 0.008900 0.999900 -0.008600 -22.65820 1 MTRIX2 4 -0.999100 0.008500 -0.042300 58.70650 1 MTRIX3 4 -0.042200 0.009000 0.999100 57.99570 1 MTRIX1 5 -0.032300 -0.994800 0.096500 24.84090 1 MTRIX2 5 -0.820000 -0.028800 -0.571600 22.66460 1 MTRIX3 5 0.571400 -0.097600 -0.814800 -64.81450 1