HEADER TRANSFERASE 09-OCT-13 4CB0 TITLE CRYSTAL STRUCTURE OF CPXAHDC IN COMPLEX WITH ATP (HEXAGONAL FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SENSOR PROTEIN CPXA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CYTOPLASMIC REGION, RESIDUES 188-457; COMPND 5 EC: 2.7.13.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BLI5 KEYWDS TRANSFERASE, SIGNAL TRANSDUCTION, TWO-COMPONENTS SYSTEMS, HISTIDINE KEYWDS 2 KINASES EXPDTA X-RAY DIFFRACTION AUTHOR A.E.MECHALY,N.SASSOON,J.M.BETTON,P.M.ALZARI REVDAT 3 20-NOV-24 4CB0 1 REMARK LINK REVDAT 2 12-JUL-17 4CB0 1 REVDAT 1 12-FEB-14 4CB0 0 JRNL AUTH A.E.MECHALY,N.SASSOON,J.M.BETTON,P.M.ALZARI JRNL TITL SEGMENTAL HELICAL MOTIONS AND DYNAMICAL ASYMMETRY MODULATE JRNL TITL 2 HISTIDINE KINASE AUTOPHOSPHORYLATION. JRNL REF PLOS BIOL. V. 12 1776 2014 JRNL REFN ISSN 1544-9173 JRNL PMID 24492262 JRNL DOI 10.1371/JOURNAL.PBIO.1001776 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.910 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 23740 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2219 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.5321 - 8.3016 0.97 2511 153 0.2120 0.2139 REMARK 3 2 8.3016 - 6.5949 0.99 2587 120 0.2121 0.2649 REMARK 3 3 6.5949 - 5.7628 1.00 2602 124 0.2335 0.3010 REMARK 3 4 5.7628 - 5.2367 1.00 2589 140 0.2080 0.2617 REMARK 3 5 5.2367 - 4.8617 1.00 2578 144 0.1785 0.2030 REMARK 3 6 4.8617 - 4.5753 1.00 2607 129 0.1499 0.1651 REMARK 3 7 4.5753 - 4.3464 1.00 2563 151 0.1423 0.1787 REMARK 3 8 4.3464 - 4.1573 1.00 2589 136 0.1554 0.1624 REMARK 3 9 4.1573 - 3.9973 1.00 2605 121 0.1831 0.2224 REMARK 3 10 3.9973 - 3.8594 1.00 2590 145 0.1871 0.1921 REMARK 3 11 3.8594 - 3.7388 1.00 2563 137 0.2066 0.2494 REMARK 3 12 3.7388 - 3.6320 1.00 2565 153 0.2186 0.2385 REMARK 3 13 3.6320 - 3.5364 1.00 2548 184 0.2230 0.2725 REMARK 3 14 3.5364 - 3.4501 1.00 2573 134 0.2646 0.2860 REMARK 3 15 3.4501 - 3.3717 1.00 2622 122 0.2862 0.3304 REMARK 3 16 3.3717 - 3.3000 1.00 2601 126 0.3504 0.4212 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 110.8 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 189.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 3776 REMARK 3 ANGLE : 1.897 5129 REMARK 3 CHIRALITY : 0.101 569 REMARK 3 PLANARITY : 0.010 661 REMARK 3 DIHEDRAL : 17.992 1428 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 43.2951 -52.4450 3.9622 REMARK 3 T TENSOR REMARK 3 T11: 1.3061 T22: 1.4861 REMARK 3 T33: 1.6930 T12: -0.0260 REMARK 3 T13: -0.0106 T23: -0.0649 REMARK 3 L TENSOR REMARK 3 L11: 5.4804 L22: 0.3160 REMARK 3 L33: 0.5519 L12: -0.0811 REMARK 3 L13: -0.4072 L23: -0.0864 REMARK 3 S TENSOR REMARK 3 S11: 0.0088 S12: 0.3750 S13: -0.0519 REMARK 3 S21: -0.1901 S22: 0.0835 S23: -0.3248 REMARK 3 S31: -0.1080 S32: 0.0746 S33: -0.0892 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CB0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1290058685. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 287 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23821 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 49.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 25.10 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 26.40 REMARK 200 R MERGE FOR SHELL (I) : 0.81000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 82.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 7.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.01700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 164.03400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 123.02550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 205.04250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.00850 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 82.01700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 164.03400 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 205.04250 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 123.02550 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 41.00850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -88.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 160 REMARK 465 GLY A 161 REMARK 465 SER A 162 REMARK 465 SER A 163 REMARK 465 HIS A 164 REMARK 465 HIS A 165 REMARK 465 HIS A 166 REMARK 465 HIS A 167 REMARK 465 HIS A 168 REMARK 465 HIS A 169 REMARK 465 SER A 170 REMARK 465 SER A 171 REMARK 465 GLY A 172 REMARK 465 LEU A 173 REMARK 465 VAL A 174 REMARK 465 PRO A 175 REMARK 465 ARG A 176 REMARK 465 GLY A 177 REMARK 465 SER A 178 REMARK 465 HIS A 179 REMARK 465 MSE A 180 REMARK 465 GLU A 181 REMARK 465 ASN A 182 REMARK 465 LEU A 183 REMARK 465 TYR A 184 REMARK 465 PHE A 185 REMARK 465 GLN A 186 REMARK 465 GLY A 187 REMARK 465 LYS A 188 REMARK 465 PRO A 189 REMARK 465 ALA A 190 REMARK 465 ARG A 191 REMARK 465 LYS A 192 REMARK 465 LEU A 193 REMARK 465 LYS A 194 REMARK 465 ASN A 195 REMARK 465 ALA A 196 REMARK 465 ALA A 197 REMARK 465 ASP A 198 REMARK 465 GLU A 199 REMARK 465 VAL A 200 REMARK 465 ALA A 201 REMARK 465 GLN A 202 REMARK 465 GLY A 203 REMARK 465 ASN A 204 REMARK 465 LEU A 205 REMARK 465 ARG A 206 REMARK 465 GLN A 207 REMARK 465 HIS A 208 REMARK 465 PRO A 209 REMARK 465 GLU A 210 REMARK 465 LEU A 211 REMARK 465 GLU A 212 REMARK 465 ALA A 213 REMARK 465 GLY A 214 REMARK 465 PRO A 215 REMARK 465 ARG A 456 REMARK 465 SER A 457 REMARK 465 MSE B 160 REMARK 465 GLY B 161 REMARK 465 SER B 162 REMARK 465 SER B 163 REMARK 465 HIS B 164 REMARK 465 HIS B 165 REMARK 465 HIS B 166 REMARK 465 HIS B 167 REMARK 465 HIS B 168 REMARK 465 HIS B 169 REMARK 465 SER B 170 REMARK 465 SER B 171 REMARK 465 GLY B 172 REMARK 465 LEU B 173 REMARK 465 VAL B 174 REMARK 465 PRO B 175 REMARK 465 ARG B 176 REMARK 465 GLY B 177 REMARK 465 SER B 178 REMARK 465 HIS B 179 REMARK 465 MSE B 180 REMARK 465 GLU B 181 REMARK 465 ASN B 182 REMARK 465 LEU B 183 REMARK 465 TYR B 184 REMARK 465 PHE B 185 REMARK 465 GLN B 186 REMARK 465 GLY B 187 REMARK 465 LYS B 188 REMARK 465 PRO B 189 REMARK 465 ALA B 190 REMARK 465 ARG B 191 REMARK 465 LYS B 192 REMARK 465 LEU B 193 REMARK 465 LYS B 194 REMARK 465 ASN B 195 REMARK 465 ALA B 196 REMARK 465 ALA B 197 REMARK 465 ASP B 198 REMARK 465 GLU B 199 REMARK 465 VAL B 200 REMARK 465 ALA B 201 REMARK 465 GLN B 202 REMARK 465 GLY B 203 REMARK 465 ASN B 204 REMARK 465 LEU B 205 REMARK 465 ARG B 206 REMARK 465 GLN B 207 REMARK 465 HIS B 208 REMARK 465 PRO B 209 REMARK 465 GLU B 210 REMARK 465 LEU B 211 REMARK 465 GLU B 212 REMARK 465 ALA B 213 REMARK 465 GLY B 214 REMARK 465 PRO B 215 REMARK 465 GLN B 216 REMARK 465 GLU B 217 REMARK 465 PHE B 218 REMARK 465 LEU B 219 REMARK 465 ALA B 220 REMARK 465 MSE B 294 REMARK 465 SER B 295 REMARK 465 ARG B 296 REMARK 465 ASN B 297 REMARK 465 GLN B 298 REMARK 465 GLN B 299 REMARK 465 LYS B 300 REMARK 465 ASN B 301 REMARK 465 ALA B 302 REMARK 465 LEU B 303 REMARK 465 VAL B 304 REMARK 465 GLU B 413 REMARK 465 SER B 414 REMARK 465 GLY B 415 REMARK 465 GLY B 416 REMARK 465 ARG B 456 REMARK 465 SER B 457 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 418 N - CA - C ANGL. DEV. = -16.2 DEGREES REMARK 500 LEU B 292 CA - CB - CG ANGL. DEV. = 16.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 217 -23.98 107.11 REMARK 500 ALA A 221 99.60 -58.17 REMARK 500 LEU A 303 -36.17 75.53 REMARK 500 VAL A 304 114.98 -29.52 REMARK 500 THR A 367 -33.87 -135.52 REMARK 500 THR A 417 147.97 72.55 REMARK 500 THR B 367 -34.20 -135.69 REMARK 500 PHE B 403 19.60 56.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 217 PHE A 218 145.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1456 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1457 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1458 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1459 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BIU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CPXAHDC (ORTHORHOMBIC FORM 1) REMARK 900 RELATED ID: 4BIV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CPXAHDC (TRIGONAL FORM) REMARK 900 RELATED ID: 4BIW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CPXAHDC (HEXAGONAL FORM) REMARK 900 RELATED ID: 4BIX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CPXAHDC (MONOCLINIC FORM 1) REMARK 900 RELATED ID: 4BIY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CPXAHDC (MONOCLINIC FORM 2) REMARK 900 RELATED ID: 4BIZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CPXAHDC (ORTHORHOMBIC FORM 2) DBREF 4CB0 A 188 457 UNP P0AE82 CPXA_ECOLI 188 457 DBREF 4CB0 B 188 457 UNP P0AE82 CPXA_ECOLI 188 457 SEQADV 4CB0 MSE A 160 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 GLY A 161 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 SER A 162 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 SER A 163 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 HIS A 164 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 HIS A 165 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 HIS A 166 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 HIS A 167 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 HIS A 168 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 HIS A 169 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 SER A 170 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 SER A 171 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 GLY A 172 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 LEU A 173 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 VAL A 174 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 PRO A 175 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 ARG A 176 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 GLY A 177 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 SER A 178 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 HIS A 179 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 MSE A 180 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 GLU A 181 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 ASN A 182 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 LEU A 183 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 TYR A 184 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 PHE A 185 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 GLN A 186 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 GLY A 187 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 MSE B 160 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 GLY B 161 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 SER B 162 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 SER B 163 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 HIS B 164 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 HIS B 165 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 HIS B 166 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 HIS B 167 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 HIS B 168 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 HIS B 169 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 SER B 170 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 SER B 171 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 GLY B 172 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 LEU B 173 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 VAL B 174 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 PRO B 175 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 ARG B 176 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 GLY B 177 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 SER B 178 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 HIS B 179 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 MSE B 180 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 GLU B 181 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 ASN B 182 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 LEU B 183 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 TYR B 184 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 PHE B 185 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 GLN B 186 UNP P0AE82 EXPRESSION TAG SEQADV 4CB0 GLY B 187 UNP P0AE82 EXPRESSION TAG SEQRES 1 A 298 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 298 LEU VAL PRO ARG GLY SER HIS MSE GLU ASN LEU TYR PHE SEQRES 3 A 298 GLN GLY LYS PRO ALA ARG LYS LEU LYS ASN ALA ALA ASP SEQRES 4 A 298 GLU VAL ALA GLN GLY ASN LEU ARG GLN HIS PRO GLU LEU SEQRES 5 A 298 GLU ALA GLY PRO GLN GLU PHE LEU ALA ALA GLY ALA SER SEQRES 6 A 298 PHE ASN GLN MSE VAL THR ALA LEU GLU ARG MSE MSE THR SEQRES 7 A 298 SER GLN GLN ARG LEU LEU SER ASP ILE SER HIS GLU LEU SEQRES 8 A 298 ARG THR PRO LEU THR ARG LEU GLN LEU GLY THR ALA LEU SEQRES 9 A 298 LEU ARG ARG ARG SER GLY GLU SER LYS GLU LEU GLU ARG SEQRES 10 A 298 ILE GLU THR GLU ALA GLN ARG LEU ASP SER MSE ILE ASN SEQRES 11 A 298 ASP LEU LEU VAL MSE SER ARG ASN GLN GLN LYS ASN ALA SEQRES 12 A 298 LEU VAL SER GLU THR ILE LYS ALA ASN GLN LEU TRP SER SEQRES 13 A 298 GLU VAL LEU ASP ASN ALA ALA PHE GLU ALA GLU GLN MSE SEQRES 14 A 298 GLY LYS SER LEU THR VAL ASN PHE PRO PRO GLY PRO TRP SEQRES 15 A 298 PRO LEU TYR GLY ASN PRO ASN ALA LEU GLU SER ALA LEU SEQRES 16 A 298 GLU ASN ILE VAL ARG ASN ALA LEU ARG TYR SER HIS THR SEQRES 17 A 298 LYS ILE GLU VAL GLY PHE ALA VAL ASP LYS ASP GLY ILE SEQRES 18 A 298 THR ILE THR VAL ASP ASP ASP GLY PRO GLY VAL SER PRO SEQRES 19 A 298 GLU ASP ARG GLU GLN ILE PHE ARG PRO PHE TYR ARG THR SEQRES 20 A 298 ASP GLU ALA ARG ASP ARG GLU SER GLY GLY THR GLY LEU SEQRES 21 A 298 GLY LEU ALA ILE VAL GLU THR ALA ILE GLN GLN HIS ARG SEQRES 22 A 298 GLY TRP VAL LYS ALA GLU ASP SER PRO LEU GLY GLY LEU SEQRES 23 A 298 ARG LEU VAL ILE TRP LEU PRO LEU TYR LYS ARG SER SEQRES 1 B 298 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 298 LEU VAL PRO ARG GLY SER HIS MSE GLU ASN LEU TYR PHE SEQRES 3 B 298 GLN GLY LYS PRO ALA ARG LYS LEU LYS ASN ALA ALA ASP SEQRES 4 B 298 GLU VAL ALA GLN GLY ASN LEU ARG GLN HIS PRO GLU LEU SEQRES 5 B 298 GLU ALA GLY PRO GLN GLU PHE LEU ALA ALA GLY ALA SER SEQRES 6 B 298 PHE ASN GLN MSE VAL THR ALA LEU GLU ARG MSE MSE THR SEQRES 7 B 298 SER GLN GLN ARG LEU LEU SER ASP ILE SER HIS GLU LEU SEQRES 8 B 298 ARG THR PRO LEU THR ARG LEU GLN LEU GLY THR ALA LEU SEQRES 9 B 298 LEU ARG ARG ARG SER GLY GLU SER LYS GLU LEU GLU ARG SEQRES 10 B 298 ILE GLU THR GLU ALA GLN ARG LEU ASP SER MSE ILE ASN SEQRES 11 B 298 ASP LEU LEU VAL MSE SER ARG ASN GLN GLN LYS ASN ALA SEQRES 12 B 298 LEU VAL SER GLU THR ILE LYS ALA ASN GLN LEU TRP SER SEQRES 13 B 298 GLU VAL LEU ASP ASN ALA ALA PHE GLU ALA GLU GLN MSE SEQRES 14 B 298 GLY LYS SER LEU THR VAL ASN PHE PRO PRO GLY PRO TRP SEQRES 15 B 298 PRO LEU TYR GLY ASN PRO ASN ALA LEU GLU SER ALA LEU SEQRES 16 B 298 GLU ASN ILE VAL ARG ASN ALA LEU ARG TYR SER HIS THR SEQRES 17 B 298 LYS ILE GLU VAL GLY PHE ALA VAL ASP LYS ASP GLY ILE SEQRES 18 B 298 THR ILE THR VAL ASP ASP ASP GLY PRO GLY VAL SER PRO SEQRES 19 B 298 GLU ASP ARG GLU GLN ILE PHE ARG PRO PHE TYR ARG THR SEQRES 20 B 298 ASP GLU ALA ARG ASP ARG GLU SER GLY GLY THR GLY LEU SEQRES 21 B 298 GLY LEU ALA ILE VAL GLU THR ALA ILE GLN GLN HIS ARG SEQRES 22 B 298 GLY TRP VAL LYS ALA GLU ASP SER PRO LEU GLY GLY LEU SEQRES 23 B 298 ARG LEU VAL ILE TRP LEU PRO LEU TYR LYS ARG SER MODRES 4CB0 MSE A 228 MET SELENOMETHIONINE MODRES 4CB0 MSE A 235 MET SELENOMETHIONINE MODRES 4CB0 MSE A 236 MET SELENOMETHIONINE MODRES 4CB0 MSE A 287 MET SELENOMETHIONINE MODRES 4CB0 MSE A 294 MET SELENOMETHIONINE MODRES 4CB0 MSE A 328 MET SELENOMETHIONINE MODRES 4CB0 MSE B 228 MET SELENOMETHIONINE MODRES 4CB0 MSE B 235 MET SELENOMETHIONINE MODRES 4CB0 MSE B 236 MET SELENOMETHIONINE MODRES 4CB0 MSE B 287 MET SELENOMETHIONINE MODRES 4CB0 MSE B 328 MET SELENOMETHIONINE HET MSE A 228 8 HET MSE A 235 8 HET MSE A 236 8 HET MSE A 287 8 HET MSE A 294 8 HET MSE A 328 8 HET MSE B 228 8 HET MSE B 235 8 HET MSE B 236 8 HET MSE B 287 8 HET MSE B 328 8 HET ATP A 501 31 HET SO4 A1456 5 HET SO4 A1457 5 HET SO4 A1458 5 HET SO4 A1459 5 HET ATP B 501 31 HET SO4 B1456 5 HETNAM MSE SELENOMETHIONINE HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM SO4 SULFATE ION FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 3 ATP 2(C10 H16 N5 O13 P3) FORMUL 4 SO4 5(O4 S 2-) HELIX 1 1 GLU A 217 ALA A 221 5 5 HELIX 2 2 SER A 224 GLY A 269 1 46 HELIX 3 3 SER A 271 ASN A 301 1 31 HELIX 4 4 ALA A 310 GLY A 329 1 20 HELIX 5 5 ASN A 346 SER A 365 1 20 HELIX 6 6 GLU A 394 ILE A 399 1 6 HELIX 7 7 THR A 406 GLU A 413 1 8 HELIX 8 8 LEU A 419 HIS A 431 1 13 HELIX 9 9 SER B 224 GLY B 269 1 46 HELIX 10 10 SER B 271 LEU B 291 1 21 HELIX 11 11 ALA B 310 GLY B 329 1 20 HELIX 12 12 ASN B 346 SER B 365 1 20 HELIX 13 13 GLU B 394 ILE B 399 1 6 HELIX 14 14 LEU B 419 HIS B 431 1 13 SHEET 1 AA 2 GLU A 306 LYS A 309 0 SHEET 2 AA 2 PRO A 342 GLY A 345 -1 O LEU A 343 N ILE A 308 SHEET 1 AB 5 SER A 331 PHE A 336 0 SHEET 2 AB 5 LYS A 368 GLY A 372 1 O ILE A 369 N THR A 333 SHEET 3 AB 5 GLY A 379 ASP A 386 -1 O THR A 383 N GLY A 372 SHEET 4 AB 5 LEU A 445 PRO A 452 -1 O LEU A 445 N ASP A 386 SHEET 5 AB 5 TRP A 434 ASP A 439 -1 O TRP A 434 N TRP A 450 SHEET 1 BA 2 GLU B 306 LYS B 309 0 SHEET 2 BA 2 PRO B 342 GLY B 345 -1 O LEU B 343 N ILE B 308 SHEET 1 BB 5 SER B 331 PHE B 336 0 SHEET 2 BB 5 LYS B 368 ALA B 374 1 O ILE B 369 N THR B 333 SHEET 3 BB 5 GLY B 379 ASP B 386 -1 O THR B 381 N ALA B 374 SHEET 4 BB 5 LEU B 445 PRO B 452 -1 O LEU B 445 N ASP B 386 SHEET 5 BB 5 TRP B 434 ASP B 439 -1 O TRP B 434 N TRP B 450 LINK C GLN A 227 N MSE A 228 1555 1555 1.32 LINK C MSE A 228 N VAL A 229 1555 1555 1.33 LINK C ARG A 234 N MSE A 235 1555 1555 1.33 LINK C MSE A 235 N MSE A 236 1555 1555 1.33 LINK C MSE A 236 N THR A 237 1555 1555 1.33 LINK C SER A 286 N MSE A 287 1555 1555 1.33 LINK C MSE A 287 N ILE A 288 1555 1555 1.33 LINK C VAL A 293 N MSE A 294 1555 1555 1.33 LINK C MSE A 294 N SER A 295 1555 1555 1.34 LINK C GLN A 327 N MSE A 328 1555 1555 1.32 LINK C MSE A 328 N GLY A 329 1555 1555 1.33 LINK C GLN B 227 N MSE B 228 1555 1555 1.32 LINK C MSE B 228 N VAL B 229 1555 1555 1.33 LINK C ARG B 234 N MSE B 235 1555 1555 1.32 LINK C MSE B 235 N MSE B 236 1555 1555 1.34 LINK C MSE B 236 N THR B 237 1555 1555 1.32 LINK C SER B 286 N MSE B 287 1555 1555 1.33 LINK C MSE B 287 N ILE B 288 1555 1555 1.34 LINK C GLN B 327 N MSE B 328 1555 1555 1.33 LINK C MSE B 328 N GLY B 329 1555 1555 1.32 SITE 1 AC1 17 ASN A 360 TYR A 364 ASP A 386 PRO A 389 SITE 2 AC1 17 GLY A 390 VAL A 391 ILE A 399 TYR A 404 SITE 3 AC1 17 ARG A 405 THR A 406 ALA A 409 GLY A 416 SITE 4 AC1 17 THR A 417 GLY A 418 LEU A 419 GLY A 420 SITE 5 AC1 17 LEU A 421 SITE 1 AC2 17 HIS A 248 ASN B 360 TYR B 364 ASP B 386 SITE 2 AC2 17 PRO B 389 GLY B 390 VAL B 391 ILE B 399 SITE 3 AC2 17 ARG B 405 THR B 406 ALA B 409 THR B 417 SITE 4 AC2 17 GLY B 418 LEU B 419 GLY B 420 LEU B 421 SITE 5 AC2 17 LEU B 445 SITE 1 AC3 2 LYS A 377 ARG B 446 SITE 1 AC4 3 PRO A 441 ARG A 446 LYS B 377 SITE 1 AC5 3 SER A 271 LYS A 272 ARG B 267 SITE 1 AC6 1 ARG A 410 CRYST1 145.198 145.198 246.051 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006887 0.003976 0.000000 0.00000 SCALE2 0.000000 0.007953 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004064 0.00000