HEADER SIGNALING PROTEIN 17-OCT-13 4CBZ TITLE NOTCH LIGAND, JAGGED-1, CONTAINS AN N-TERMINAL C2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN JAGGED-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 32-335; COMPND 5 SYNONYM: JAGGED1, HJ1, CD339; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: NAG LINKAGE AT N217 IN BOTH A, B CHAINS, FUC LINKAGE COMPND 8 AT T311 IN A CHAIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK 293S KEYWDS SIGNALING PROTEIN, SIGNALLING, GLYCOPROTEIN, EXTRACELLULAR, KEYWDS 2 DEVELOPMENTAL PROTEIN, NOTCH SIGNALING PATHWAY, EGF-LIKE DOMAIN KEYWDS 3 TRANSMEMBRANE, EGF-LIKE DOMAIN, DISEASE MUTATION EXPDTA X-RAY DIFFRACTION AUTHOR C.R.CHILAKURI,D.SHEPPARD,M.X.G.ILAGAN,L.R.HOLT,F.ABBOTT,S.LIANG, AUTHOR 2 R.KOPAN,P.A.HANDFORD,S.M.LEA REVDAT 6 13-NOV-24 4CBZ 1 REMARK REVDAT 5 20-DEC-23 4CBZ 1 HETSYN REVDAT 4 29-JUL-20 4CBZ 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 18-DEC-13 4CBZ 1 JRNL REVDAT 2 11-DEC-13 4CBZ 1 JRNL REVDAT 1 27-NOV-13 4CBZ 0 JRNL AUTH C.R.CHILAKURI,D.SHEPPARD,M.X.G.ILAGAN,L.R.HOLT,F.ABBOTT, JRNL AUTH 2 S.LIANG,R.KOPAN,P.A.HANDFORD,S.M.LEA JRNL TITL STRUCTURAL ANALYSIS UNCOVERS LIPID-BINDING PROPERTIES OF JRNL TITL 2 NOTCH LIGANDS JRNL REF CELL REP. V. 5 861 2013 JRNL REFN ESSN 2211-1247 JRNL PMID 24239355 JRNL DOI 10.1016/J.CELREP.2013.10.029 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 82.8 REMARK 3 NUMBER OF REFLECTIONS : 22816 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1168 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 11 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.62 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.76 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1451 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2594 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1383 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE : 0.3458 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.69 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 68 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4222 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 60 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 74.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.67450 REMARK 3 B22 (A**2) : 0.51350 REMARK 3 B33 (A**2) : -1.18800 REMARK 3 B12 (A**2) : 5.55760 REMARK 3 B13 (A**2) : 3.42120 REMARK 3 B23 (A**2) : 0.05330 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.386 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.438 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.274 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.477 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.283 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4400 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5969 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1486 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 123 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 640 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4400 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 541 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4519 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.12 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.78 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.22 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 48.0117 -18.9750 -8.2319 REMARK 3 T TENSOR REMARK 3 T11: -0.1214 T22: -0.0853 REMARK 3 T33: -0.1049 T12: 0.0663 REMARK 3 T13: 0.0044 T23: -0.0359 REMARK 3 L TENSOR REMARK 3 L11: 3.6648 L22: 0.7180 REMARK 3 L33: 2.9909 L12: -1.2661 REMARK 3 L13: -3.0856 L23: 0.8104 REMARK 3 S TENSOR REMARK 3 S11: 0.0075 S12: 0.0513 S13: -0.1065 REMARK 3 S21: -0.1133 S22: 0.0176 S23: 0.0269 REMARK 3 S31: -0.0971 S32: 0.0319 S33: -0.0250 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 16.9825 -19.3065 24.1400 REMARK 3 T TENSOR REMARK 3 T11: -0.0684 T22: -0.0712 REMARK 3 T33: -0.0696 T12: 0.1170 REMARK 3 T13: 0.0055 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 2.2738 L22: 0.1956 REMARK 3 L33: 3.3166 L12: 0.0318 REMARK 3 L13: -2.5170 L23: -0.3213 REMARK 3 S TENSOR REMARK 3 S11: -0.0191 S12: 0.0545 S13: 0.0417 REMARK 3 S21: 0.0326 S22: -0.0283 S23: 0.0526 REMARK 3 S31: -0.0293 S32: -0.1774 S33: 0.0474 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CBZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1290058743. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22857 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 61.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 82.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2VJ2 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 56 REMARK 465 GLY A 57 REMARK 465 ALA A 58 REMARK 465 ARG A 59 REMARK 465 ASN A 60 REMARK 465 PRO A 61 REMARK 465 GLY A 62 REMARK 465 ASP A 63 REMARK 465 ARG A 64 REMARK 465 LYS A 65 REMARK 465 ASN A 143 REMARK 465 ASP A 144 REMARK 465 THR A 145 REMARK 465 VAL A 146 REMARK 465 GLN A 147 REMARK 465 HIS A 338 REMARK 465 HIS A 339 REMARK 465 HIS A 340 REMARK 465 HIS A 341 REMARK 465 HIS A 342 REMARK 465 HIS A 343 REMARK 465 GLY B 56 REMARK 465 GLY B 57 REMARK 465 ALA B 58 REMARK 465 ARG B 59 REMARK 465 ASN B 60 REMARK 465 PRO B 61 REMARK 465 GLY B 62 REMARK 465 ASP B 63 REMARK 465 ARG B 64 REMARK 465 LYS B 65 REMARK 465 ASN B 143 REMARK 465 ASP B 144 REMARK 465 THR B 145 REMARK 465 VAL B 146 REMARK 465 GLN B 147 REMARK 465 TYR B 299 REMARK 465 CYS B 300 REMARK 465 GLY B 301 REMARK 465 THR B 302 REMARK 465 HIS B 303 REMARK 465 GLN B 304 REMARK 465 PRO B 305 REMARK 465 CYS B 306 REMARK 465 LEU B 307 REMARK 465 ASN B 308 REMARK 465 GLY B 309 REMARK 465 GLY B 310 REMARK 465 THR B 311 REMARK 465 CYS B 312 REMARK 465 SER B 313 REMARK 465 ASN B 314 REMARK 465 THR B 315 REMARK 465 GLY B 316 REMARK 465 PRO B 317 REMARK 465 ASP B 318 REMARK 465 LYS B 319 REMARK 465 TYR B 320 REMARK 465 GLN B 321 REMARK 465 CYS B 322 REMARK 465 SER B 323 REMARK 465 CYS B 324 REMARK 465 PRO B 325 REMARK 465 GLU B 326 REMARK 465 GLY B 327 REMARK 465 TYR B 328 REMARK 465 SER B 329 REMARK 465 GLY B 330 REMARK 465 PRO B 331 REMARK 465 ASN B 332 REMARK 465 CYS B 333 REMARK 465 GLU B 334 REMARK 465 ILE B 335 REMARK 465 VAL B 336 REMARK 465 ASP B 337 REMARK 465 HIS B 338 REMARK 465 HIS B 339 REMARK 465 HIS B 340 REMARK 465 HIS B 341 REMARK 465 HIS B 342 REMARK 465 HIS B 343 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 272 CB CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 48 -150.17 -89.77 REMARK 500 ASP A 72 76.55 -101.32 REMARK 500 ARG A 130 -43.85 74.90 REMARK 500 SER A 164 139.07 -170.08 REMARK 500 ASP A 204 56.33 -154.15 REMARK 500 CYS A 245 -159.52 -96.54 REMARK 500 LYS A 246 -40.42 170.85 REMARK 500 CYS A 282 74.93 -155.82 REMARK 500 THR A 302 -96.70 -74.29 REMARK 500 GLN A 304 71.60 55.20 REMARK 500 THR A 315 21.25 -142.59 REMARK 500 PRO A 325 -163.34 -77.81 REMARK 500 ASP B 72 77.80 -106.81 REMARK 500 ARG B 130 -41.75 73.87 REMARK 500 SER B 164 139.77 -170.07 REMARK 500 ASP B 204 65.23 -155.06 REMARK 500 ASP B 205 -158.43 -153.83 REMARK 500 VAL B 272 -91.29 -94.37 REMARK 500 CYS B 282 75.34 -156.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2015 DISTANCE = 5.87 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CC0 RELATED DB: PDB REMARK 900 NOTCH LIGAND, JAGGED-1, CONTAINS AN N-TERMINAL C2 DOMAIN REMARK 900 RELATED ID: 4CC1 RELATED DB: PDB REMARK 900 NOTCH LIGAND, JAGGED-1, CONTAINS AN N-TERMINAL C2 DOMAIN DBREF 4CBZ A 32 335 UNP P78504 JAG1_HUMAN 32 335 DBREF 4CBZ B 32 335 UNP P78504 JAG1_HUMAN 32 335 SEQADV 4CBZ VAL A 336 UNP P78504 EXPRESSION TAG SEQADV 4CBZ ASP A 337 UNP P78504 EXPRESSION TAG SEQADV 4CBZ HIS A 338 UNP P78504 EXPRESSION TAG SEQADV 4CBZ HIS A 339 UNP P78504 EXPRESSION TAG SEQADV 4CBZ HIS A 340 UNP P78504 EXPRESSION TAG SEQADV 4CBZ HIS A 341 UNP P78504 EXPRESSION TAG SEQADV 4CBZ HIS A 342 UNP P78504 EXPRESSION TAG SEQADV 4CBZ HIS A 343 UNP P78504 EXPRESSION TAG SEQADV 4CBZ VAL B 336 UNP P78504 EXPRESSION TAG SEQADV 4CBZ ASP B 337 UNP P78504 EXPRESSION TAG SEQADV 4CBZ HIS B 338 UNP P78504 EXPRESSION TAG SEQADV 4CBZ HIS B 339 UNP P78504 EXPRESSION TAG SEQADV 4CBZ HIS B 340 UNP P78504 EXPRESSION TAG SEQADV 4CBZ HIS B 341 UNP P78504 EXPRESSION TAG SEQADV 4CBZ HIS B 342 UNP P78504 EXPRESSION TAG SEQADV 4CBZ HIS B 343 UNP P78504 EXPRESSION TAG SEQRES 1 A 312 SER GLY GLN PHE GLU LEU GLU ILE LEU SER MET GLN ASN SEQRES 2 A 312 VAL ASN GLY GLU LEU GLN ASN GLY ASN CYS CYS GLY GLY SEQRES 3 A 312 ALA ARG ASN PRO GLY ASP ARG LYS CYS THR ARG ASP GLU SEQRES 4 A 312 CYS ASP THR TYR PHE LYS VAL CYS LEU LYS GLU TYR GLN SEQRES 5 A 312 SER ARG VAL THR ALA GLY GLY PRO CYS SER PHE GLY SER SEQRES 6 A 312 GLY SER THR PRO VAL ILE GLY GLY ASN THR PHE ASN LEU SEQRES 7 A 312 LYS ALA SER ARG GLY ASN ASP ARG ASN ARG ILE VAL LEU SEQRES 8 A 312 PRO PHE SER PHE ALA TRP PRO ARG SER TYR THR LEU LEU SEQRES 9 A 312 VAL GLU ALA TRP ASP SER SER ASN ASP THR VAL GLN PRO SEQRES 10 A 312 ASP SER ILE ILE GLU LYS ALA SER HIS SER GLY MET ILE SEQRES 11 A 312 ASN PRO SER ARG GLN TRP GLN THR LEU LYS GLN ASN THR SEQRES 12 A 312 GLY VAL ALA HIS PHE GLU TYR GLN ILE ARG VAL THR CYS SEQRES 13 A 312 ASP ASP TYR TYR TYR GLY PHE GLY CYS ASN LYS PHE CYS SEQRES 14 A 312 ARG PRO ARG ASP ASP PHE PHE GLY HIS TYR ALA CYS ASP SEQRES 15 A 312 GLN ASN GLY ASN LYS THR CYS MET GLU GLY TRP MET GLY SEQRES 16 A 312 PRO GLU CYS ASN ARG ALA ILE CYS ARG GLN GLY CYS SER SEQRES 17 A 312 PRO LYS HIS GLY SER CYS LYS LEU PRO GLY ASP CYS ARG SEQRES 18 A 312 CYS GLN TYR GLY TRP GLN GLY LEU TYR CYS ASP LYS CYS SEQRES 19 A 312 ILE PRO HIS PRO GLY CYS VAL HIS GLY ILE CYS ASN GLU SEQRES 20 A 312 PRO TRP GLN CYS LEU CYS GLU THR ASN TRP GLY GLY GLN SEQRES 21 A 312 LEU CYS ASP LYS ASP LEU ASN TYR CYS GLY THR HIS GLN SEQRES 22 A 312 PRO CYS LEU ASN GLY GLY THR CYS SER ASN THR GLY PRO SEQRES 23 A 312 ASP LYS TYR GLN CYS SER CYS PRO GLU GLY TYR SER GLY SEQRES 24 A 312 PRO ASN CYS GLU ILE VAL ASP HIS HIS HIS HIS HIS HIS SEQRES 1 B 312 SER GLY GLN PHE GLU LEU GLU ILE LEU SER MET GLN ASN SEQRES 2 B 312 VAL ASN GLY GLU LEU GLN ASN GLY ASN CYS CYS GLY GLY SEQRES 3 B 312 ALA ARG ASN PRO GLY ASP ARG LYS CYS THR ARG ASP GLU SEQRES 4 B 312 CYS ASP THR TYR PHE LYS VAL CYS LEU LYS GLU TYR GLN SEQRES 5 B 312 SER ARG VAL THR ALA GLY GLY PRO CYS SER PHE GLY SER SEQRES 6 B 312 GLY SER THR PRO VAL ILE GLY GLY ASN THR PHE ASN LEU SEQRES 7 B 312 LYS ALA SER ARG GLY ASN ASP ARG ASN ARG ILE VAL LEU SEQRES 8 B 312 PRO PHE SER PHE ALA TRP PRO ARG SER TYR THR LEU LEU SEQRES 9 B 312 VAL GLU ALA TRP ASP SER SER ASN ASP THR VAL GLN PRO SEQRES 10 B 312 ASP SER ILE ILE GLU LYS ALA SER HIS SER GLY MET ILE SEQRES 11 B 312 ASN PRO SER ARG GLN TRP GLN THR LEU LYS GLN ASN THR SEQRES 12 B 312 GLY VAL ALA HIS PHE GLU TYR GLN ILE ARG VAL THR CYS SEQRES 13 B 312 ASP ASP TYR TYR TYR GLY PHE GLY CYS ASN LYS PHE CYS SEQRES 14 B 312 ARG PRO ARG ASP ASP PHE PHE GLY HIS TYR ALA CYS ASP SEQRES 15 B 312 GLN ASN GLY ASN LYS THR CYS MET GLU GLY TRP MET GLY SEQRES 16 B 312 PRO GLU CYS ASN ARG ALA ILE CYS ARG GLN GLY CYS SER SEQRES 17 B 312 PRO LYS HIS GLY SER CYS LYS LEU PRO GLY ASP CYS ARG SEQRES 18 B 312 CYS GLN TYR GLY TRP GLN GLY LEU TYR CYS ASP LYS CYS SEQRES 19 B 312 ILE PRO HIS PRO GLY CYS VAL HIS GLY ILE CYS ASN GLU SEQRES 20 B 312 PRO TRP GLN CYS LEU CYS GLU THR ASN TRP GLY GLY GLN SEQRES 21 B 312 LEU CYS ASP LYS ASP LEU ASN TYR CYS GLY THR HIS GLN SEQRES 22 B 312 PRO CYS LEU ASN GLY GLY THR CYS SER ASN THR GLY PRO SEQRES 23 B 312 ASP LYS TYR GLN CYS SER CYS PRO GLU GLY TYR SER GLY SEQRES 24 B 312 PRO ASN CYS GLU ILE VAL ASP HIS HIS HIS HIS HIS HIS MODRES 4CBZ ASN A 217 ASN GLYCOSYLATION SITE MODRES 4CBZ THR A 311 THR GLYCOSYLATION SITE MODRES 4CBZ ASN B 217 ASN GLYCOSYLATION SITE HET NAG A1338 14 HET FUC A1339 10 HET NAG B1299 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 4 FUC C6 H12 O5 FORMUL 6 HOH *60(H2 O) HELIX 1 1 ASN A 298 GLN A 304 1 7 SHEET 1 AA 2 PHE A 107 ASN A 108 0 SHEET 2 AA 2 GLY A 33 GLN A 43 -1 O MET A 42 N PHE A 107 SHEET 1 AB 2 ARG A 119 PHE A 124 0 SHEET 2 AB 2 GLY A 33 GLN A 43 -1 O GLY A 33 N PHE A 124 SHEET 1 AC 4 SER A 164 GLN A 172 0 SHEET 2 AC 4 HIS A 178 CYS A 187 -1 O PHE A 179 N GLN A 172 SHEET 3 AC 4 GLY A 33 GLN A 43 -1 O GLN A 34 N THR A 186 SHEET 4 AC 4 PHE A 107 ASN A 108 -1 O PHE A 107 N MET A 42 SHEET 1 AD 4 SER A 164 GLN A 172 0 SHEET 2 AD 4 HIS A 178 CYS A 187 -1 O PHE A 179 N GLN A 172 SHEET 3 AD 4 GLY A 33 GLN A 43 -1 O GLN A 34 N THR A 186 SHEET 4 AD 4 ARG A 119 PHE A 124 -1 O ILE A 120 N LEU A 37 SHEET 1 AE 4 GLY A 95 SER A 98 0 SHEET 2 AE 4 THR A 73 LYS A 80 -1 O VAL A 77 N GLY A 97 SHEET 3 AE 4 SER A 131 ASP A 140 -1 O THR A 133 N LYS A 80 SHEET 4 AE 4 SER A 150 MET A 160 -1 O SER A 150 N ASP A 140 SHEET 1 AF 2 TYR A 191 TYR A 192 0 SHEET 2 AF 2 LYS A 198 PHE A 199 -1 O LYS A 198 N TYR A 192 SHEET 1 AG 3 ARG A 203 ASP A 205 0 SHEET 2 AG 3 GLY A 208 CYS A 212 -1 O GLY A 208 N ASP A 205 SHEET 3 AG 3 LYS A 218 CYS A 220 -1 O THR A 219 N ALA A 211 SHEET 1 AH 2 TRP A 224 MET A 225 0 SHEET 2 AH 2 ARG A 231 ALA A 232 -1 O ARG A 231 N MET A 225 SHEET 1 AI 2 GLY A 243 SER A 244 0 SHEET 2 AI 2 ARG A 252 CYS A 253 -1 O ARG A 252 N SER A 244 SHEET 1 AJ 2 TRP A 257 GLN A 258 0 SHEET 2 AJ 2 LYS A 264 CYS A 265 -1 O LYS A 264 N GLN A 258 SHEET 1 AK 2 GLY A 274 ILE A 275 0 SHEET 2 AK 2 LEU A 283 CYS A 284 -1 O LEU A 283 N ILE A 275 SHEET 1 AL 2 TRP A 288 GLY A 289 0 SHEET 2 AL 2 LYS A 295 ASP A 296 -1 O LYS A 295 N GLY A 289 SHEET 1 AM 2 THR A 311 ASN A 314 0 SHEET 2 AM 2 TYR A 320 SER A 323 -1 O GLN A 321 N SER A 313 SHEET 1 AN 2 TYR A 328 SER A 329 0 SHEET 2 AN 2 ILE A 335 VAL A 336 -1 O ILE A 335 N SER A 329 SHEET 1 BA 2 THR B 106 ASN B 108 0 SHEET 2 BA 2 GLY B 33 GLN B 43 -1 O MET B 42 N PHE B 107 SHEET 1 BB 2 ARG B 119 PHE B 124 0 SHEET 2 BB 2 GLY B 33 GLN B 43 -1 O GLY B 33 N PHE B 124 SHEET 1 BC 4 SER B 164 GLN B 172 0 SHEET 2 BC 4 HIS B 178 CYS B 187 -1 O PHE B 179 N GLN B 172 SHEET 3 BC 4 GLY B 33 GLN B 43 -1 O GLN B 34 N THR B 186 SHEET 4 BC 4 THR B 106 ASN B 108 -1 O PHE B 107 N MET B 42 SHEET 1 BD 4 SER B 164 GLN B 172 0 SHEET 2 BD 4 HIS B 178 CYS B 187 -1 O PHE B 179 N GLN B 172 SHEET 3 BD 4 GLY B 33 GLN B 43 -1 O GLN B 34 N THR B 186 SHEET 4 BD 4 ARG B 119 PHE B 124 -1 O ILE B 120 N LEU B 37 SHEET 1 BE 4 GLY B 95 SER B 98 0 SHEET 2 BE 4 THR B 73 LYS B 80 -1 O VAL B 77 N GLY B 97 SHEET 3 BE 4 SER B 131 ASP B 140 -1 O THR B 133 N LYS B 80 SHEET 4 BE 4 SER B 150 MET B 160 -1 O SER B 150 N ASP B 140 SHEET 1 BF 2 TYR B 191 TYR B 192 0 SHEET 2 BF 2 LYS B 198 PHE B 199 -1 O LYS B 198 N TYR B 192 SHEET 1 BG 3 ARG B 203 ASP B 205 0 SHEET 2 BG 3 GLY B 208 CYS B 212 -1 O GLY B 208 N ASP B 205 SHEET 3 BG 3 LYS B 218 CYS B 220 -1 O THR B 219 N ALA B 211 SHEET 1 BH 2 TRP B 224 MET B 225 0 SHEET 2 BH 2 ARG B 231 ALA B 232 -1 O ARG B 231 N MET B 225 SHEET 1 BI 2 GLY B 243 SER B 244 0 SHEET 2 BI 2 ARG B 252 CYS B 253 -1 O ARG B 252 N SER B 244 SHEET 1 BJ 2 TRP B 257 GLN B 258 0 SHEET 2 BJ 2 LYS B 264 CYS B 265 -1 O LYS B 264 N GLN B 258 SHEET 1 BK 2 GLY B 274 ILE B 275 0 SHEET 2 BK 2 LEU B 283 CYS B 284 -1 O LEU B 283 N ILE B 275 SHEET 1 BL 2 TRP B 288 GLY B 289 0 SHEET 2 BL 2 LYS B 295 ASP B 296 -1 O LYS B 295 N GLY B 289 SSBOND 1 CYS A 54 CYS A 66 1555 1555 2.04 SSBOND 2 CYS A 55 CYS A 71 1555 1555 2.04 SSBOND 3 CYS A 78 CYS A 92 1555 1555 2.05 SSBOND 4 CYS A 187 CYS A 196 1555 1555 2.05 SSBOND 5 CYS A 200 CYS A 212 1555 1555 2.05 SSBOND 6 CYS A 220 CYS A 229 1555 1555 2.04 SSBOND 7 CYS A 234 CYS A 245 1555 1555 2.04 SSBOND 8 CYS A 238 CYS A 251 1555 1555 2.04 SSBOND 9 CYS A 253 CYS A 262 1555 1555 2.05 SSBOND 10 CYS A 265 CYS A 276 1555 1555 2.07 SSBOND 11 CYS A 271 CYS A 282 1555 1555 2.05 SSBOND 12 CYS A 284 CYS A 293 1555 1555 2.04 SSBOND 13 CYS A 300 CYS A 312 1555 1555 2.04 SSBOND 14 CYS A 306 CYS A 322 1555 1555 2.03 SSBOND 15 CYS A 324 CYS A 333 1555 1555 2.04 SSBOND 16 CYS B 54 CYS B 66 1555 1555 2.04 SSBOND 17 CYS B 55 CYS B 71 1555 1555 2.04 SSBOND 18 CYS B 78 CYS B 92 1555 1555 2.04 SSBOND 19 CYS B 187 CYS B 196 1555 1555 2.05 SSBOND 20 CYS B 200 CYS B 212 1555 1555 2.05 SSBOND 21 CYS B 220 CYS B 229 1555 1555 2.05 SSBOND 22 CYS B 234 CYS B 245 1555 1555 2.04 SSBOND 23 CYS B 238 CYS B 251 1555 1555 2.05 SSBOND 24 CYS B 253 CYS B 262 1555 1555 2.04 SSBOND 25 CYS B 265 CYS B 276 1555 1555 2.07 SSBOND 26 CYS B 271 CYS B 282 1555 1555 2.05 SSBOND 27 CYS B 284 CYS B 293 1555 1555 2.04 LINK ND2 ASN A 217 C1 NAG A1338 1555 1555 1.44 LINK OG1 THR A 311 C1 FUC A1339 1555 1555 1.43 LINK ND2 ASN B 217 C1 NAG B1299 1555 1555 1.44 CRYST1 56.930 59.840 62.940 95.04 101.90 98.70 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017565 0.002688 0.004063 0.00000 SCALE2 0.000000 0.016906 0.002097 0.00000 SCALE3 0.000000 0.000000 0.016361 0.00000 MTRIX1 1 -0.248000 -0.594000 0.766000 29.36379 1 MTRIX2 1 -0.607000 -0.521000 -0.600000 -7.46976 1 MTRIX3 1 0.755000 -0.614000 -0.232000 -35.17925 1