HEADER LIGASE 18-OCT-13 4CC5 TITLE FRAGMENT-BASED DISCOVERY OF 6 AZAINDAZOLES AS INHIBITORS OF BACTERIAL TITLE 2 DNA LIGASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ADENYLATION DOMAIN, RESIDUES 1-312; COMPND 5 SYNONYM: POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD(+)]; COMPND 6 EC: 6.5.1.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET17 KEYWDS LIGASE, ANTIBIOTIC DESIGN EXPDTA X-RAY DIFFRACTION AUTHOR S.HOWARD,N.AMIN,A.B.BENOWITZ,E.CHIARPARIN,H.CUI,X.DENG,T.D.HEIGHTMAN, AUTHOR 2 D.J.HOLMES,A.HOPKINS,J.HUANG,Q.JIN,C.KREATSOULAS,A.C.L.MARTIN, AUTHOR 3 F.MASSEY,L.MCCLOSKEY,P.N.MORTENSON,P.PATHURI,D.TISI,P.A.WILLIAMS REVDAT 2 20-DEC-23 4CC5 1 REMARK REVDAT 1 18-JUN-14 4CC5 0 JRNL AUTH S.HOWARD,N.AMIN,A.B.BENOWITZ,E.CHIARPARIN,H.CUI,X.DENG, JRNL AUTH 2 T.D.HEIGHTMAN,D.J.HOLMES,A.HOPKINS,J.HUANG,Q.JIN, JRNL AUTH 3 C.KREATSOULAS,A.C.L.MARTIN,F.MASSEY,L.MCCLOSKEY, JRNL AUTH 4 P.N.MORTENSON,P.PATHURI,D.TISI,P.A.WILLIAMS JRNL TITL FRAGMENT-BASED DISCOVERY OF 6-AZAINDAZOLES AS INHIBITORS OF JRNL TITL 2 BACTERIAL DNA LIGASE. JRNL REF ACS MED.CHEM.LETT. V. 4 1208 2013 JRNL REFN ISSN 1948-5875 JRNL PMID 24900632 JRNL DOI 10.1021/ML4003277 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0031 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 85.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 24676 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1390 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.93 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1662 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2488 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 298 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.79000 REMARK 3 B22 (A**2) : 2.18000 REMARK 3 B33 (A**2) : -0.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.65000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.167 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.172 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.134 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.565 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.896 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2550 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2375 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3446 ; 1.473 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5471 ; 0.774 ; 2.998 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 307 ; 5.874 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 140 ;31.340 ;25.071 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 454 ;14.015 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;18.602 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 371 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2928 ; 0.000 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 586 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1231 ; 1.625 ; 2.781 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1230 ; 1.616 ; 2.778 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1319 ; 2.722 ; 3.615 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1316 ; 2.711 ; 3.599 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 919 ; 6.068 ; 7.108 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 60 REMARK 3 ORIGIN FOR THE GROUP (A): 9.6300 17.6834 38.2923 REMARK 3 T TENSOR REMARK 3 T11: 0.0831 T22: 0.0215 REMARK 3 T33: 0.0260 T12: 0.0083 REMARK 3 T13: -0.0256 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 4.9837 L22: 1.6534 REMARK 3 L33: 1.9139 L12: 0.5491 REMARK 3 L13: -0.4004 L23: -0.3140 REMARK 3 S TENSOR REMARK 3 S11: -0.0543 S12: -0.2240 S13: 0.1393 REMARK 3 S21: 0.0120 S22: -0.0168 S23: -0.1321 REMARK 3 S31: 0.0354 S32: 0.1608 S33: 0.0711 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 61 A 309 REMARK 3 ORIGIN FOR THE GROUP (A): 25.9410 18.1253 15.2419 REMARK 3 T TENSOR REMARK 3 T11: 0.0566 T22: 0.0188 REMARK 3 T33: 0.0451 T12: 0.0177 REMARK 3 T13: -0.0352 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 1.9882 L22: 1.0190 REMARK 3 L33: 1.6025 L12: 0.6237 REMARK 3 L13: -0.7227 L23: -0.1208 REMARK 3 S TENSOR REMARK 3 S11: 0.0029 S12: -0.0700 S13: -0.0409 REMARK 3 S21: -0.0397 S22: -0.0167 S23: -0.1167 REMARK 3 S31: 0.0368 S32: 0.1556 S33: 0.0138 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED. REMARK 4 REMARK 4 4CC5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1290058762. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26855 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 85.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 3JSL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M (NH4)2SO4, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 85.18150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.76150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 85.18150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.76150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 310 REMARK 465 GLU A 311 REMARK 465 GLU A 312 REMARK 465 HIS A 313 REMARK 465 HIS A 314 REMARK 465 HIS A 315 REMARK 465 HIS A 316 REMARK 465 HIS A 317 REMARK 465 HIS A 318 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 298 CG CD CE NZ REMARK 470 PRO A 309 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 26 66.53 -115.21 REMARK 500 PHE A 70 16.61 59.12 REMARK 500 ASP A 186 48.22 37.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2031 DISTANCE = 5.92 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE L5V A 1311 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CC6 RELATED DB: PDB REMARK 900 FRAGMENT-BASED DISCOVERY OF 6 AZAINDAZOLES AS INHIBITORS OF REMARK 900 BACTERIAL DNA LIGASE DBREF 4CC5 A 1 312 UNP Q9AIU7 DNLJ_STAAU 1 312 SEQADV 4CC5 HIS A 313 UNP Q9AIU7 EXPRESSION TAG SEQADV 4CC5 HIS A 314 UNP Q9AIU7 EXPRESSION TAG SEQADV 4CC5 HIS A 315 UNP Q9AIU7 EXPRESSION TAG SEQADV 4CC5 HIS A 316 UNP Q9AIU7 EXPRESSION TAG SEQADV 4CC5 HIS A 317 UNP Q9AIU7 EXPRESSION TAG SEQADV 4CC5 HIS A 318 UNP Q9AIU7 EXPRESSION TAG SEQRES 1 A 318 MET ALA ASP LEU SER SER ARG VAL ASN GLU LEU HIS ASP SEQRES 2 A 318 LEU LEU ASN GLN TYR SER TYR GLU TYR TYR VAL GLU ASP SEQRES 3 A 318 ASN PRO SER VAL PRO ASP SER GLU TYR ASP LYS LEU LEU SEQRES 4 A 318 HIS GLU LEU ILE LYS ILE GLU GLU GLU HIS PRO GLU TYR SEQRES 5 A 318 LYS THR VAL ASP SER PRO THR VAL ARG VAL GLY GLY GLU SEQRES 6 A 318 ALA GLN ALA SER PHE ASN LYS VAL ASN HIS ASP THR PRO SEQRES 7 A 318 MET LEU SER LEU GLY ASN ALA PHE ASN GLU ASP ASP LEU SEQRES 8 A 318 ARG LYS PHE ASP GLN ARG ILE ARG GLU GLN ILE GLY ASN SEQRES 9 A 318 VAL GLU TYR MET CYS GLU LEU LYS ILE ASP GLY LEU ALA SEQRES 10 A 318 VAL SER LEU LYS TYR VAL ASP GLY TYR PHE VAL GLN GLY SEQRES 11 A 318 LEU THR ARG GLY ASP GLY THR THR GLY GLU ASP ILE THR SEQRES 12 A 318 GLU ASN LEU LYS THR ILE HIS ALA ILE PRO LEU LYS MET SEQRES 13 A 318 LYS GLU PRO LEU ASN VAL GLU VAL ARG GLY GLU ALA TYR SEQRES 14 A 318 MET PRO ARG ARG SER PHE LEU ARG LEU ASN GLU GLU LYS SEQRES 15 A 318 GLU LYS ASN ASP GLU GLN LEU PHE ALA ASN PRO ARG ASN SEQRES 16 A 318 ALA ALA ALA GLY SER LEU ARG GLN LEU ASP SER LYS LEU SEQRES 17 A 318 THR ALA LYS ARG LYS LEU SER VAL PHE ILE TYR SER VAL SEQRES 18 A 318 ASN ASP PHE THR ASP PHE ASN ALA ARG SER GLN SER GLU SEQRES 19 A 318 ALA LEU ASP GLU LEU ASP LYS LEU GLY PHE THR THR ASN SEQRES 20 A 318 LYS ASN ARG ALA ARG VAL ASN ASN ILE ASP GLY VAL LEU SEQRES 21 A 318 GLU TYR ILE GLU LYS TRP THR SER GLN ARG GLU SER LEU SEQRES 22 A 318 PRO TYR ASP ILE ASP GLY ILE VAL ILE LYS VAL ASN ASP SEQRES 23 A 318 LEU ASP GLN GLN ASP GLU MET GLY PHE THR GLN LYS SER SEQRES 24 A 318 PRO ARG TRP ALA ILE ALA TYR LYS PHE PRO ALA GLU GLU SEQRES 25 A 318 HIS HIS HIS HIS HIS HIS HET SO4 A1310 5 HET L5V A1311 16 HETNAM SO4 SULFATE ION HETNAM L5V 2-CHLORANYL-6-(1H-1,2,4-TRIAZOL-3-YL)PYRAZINE FORMUL 2 SO4 O4 S 2- FORMUL 3 L5V C6 H4 CL N5 FORMUL 4 HOH *298(H2 O) HELIX 1 1 LEU A 4 VAL A 24 1 21 HELIX 2 2 PRO A 31 HIS A 49 1 19 HELIX 3 3 PRO A 50 LYS A 53 5 4 HELIX 4 4 SER A 57 GLY A 63 5 7 HELIX 5 5 ASN A 87 GLY A 103 1 17 HELIX 6 6 ILE A 142 LYS A 147 1 6 HELIX 7 7 PRO A 171 ASN A 185 1 15 HELIX 8 8 ASN A 192 ARG A 202 1 11 HELIX 9 9 ASP A 205 ARG A 212 1 8 HELIX 10 10 SER A 231 GLY A 243 1 13 HELIX 11 11 ASN A 255 ARG A 270 1 16 HELIX 12 12 GLU A 271 LEU A 273 5 3 HELIX 13 13 ASP A 286 GLY A 294 1 9 SHEET 1 AA 2 LYS A 72 ASN A 74 0 SHEET 2 AA 2 THR A 138 GLU A 140 -1 O GLY A 139 N VAL A 73 SHEET 1 AB 5 ASN A 84 ALA A 85 0 SHEET 2 AB 5 ALA A 303 LYS A 307 1 O ALA A 305 N ALA A 85 SHEET 3 AB 5 ILE A 277 VAL A 284 -1 O ILE A 280 N TYR A 306 SHEET 4 AB 5 TYR A 107 ILE A 113 -1 O MET A 108 N LYS A 283 SHEET 5 AB 5 ALA A 251 VAL A 253 -1 O ALA A 251 N CYS A 109 SHEET 1 AC 4 TYR A 126 THR A 132 0 SHEET 2 AC 4 LEU A 116 VAL A 123 -1 O SER A 119 N LEU A 131 SHEET 3 AC 4 VAL A 162 TYR A 169 -1 O VAL A 162 N TYR A 122 SHEET 4 AC 4 SER A 215 VAL A 221 -1 O SER A 215 N TYR A 169 SITE 1 AC1 6 GLY A 115 ALA A 117 ARG A 133 ARG A 194 SITE 2 AC1 6 HOH A2166 HOH A2183 SITE 1 AC2 7 LEU A 82 GLU A 110 LEU A 111 TYR A 219 SITE 2 AC2 7 LYS A 283 HOH A2159 HOH A2161 CRYST1 170.363 39.523 48.587 90.00 90.13 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005870 0.000000 0.000013 0.00000 SCALE2 0.000000 0.025302 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020582 0.00000