HEADER HYDROLASE/DNA 27-NOV-13 4CGZ TITLE CRYSTAL STRUCTURE OF THE BLOOM'S SYNDROME HELICASE BLM IN COMPLEX WITH TITLE 2 DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: BLOOM'S SYNDROME HELICASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC CORE, RESIDUES 636-1298; COMPND 5 SYNONYM: DNA HELICASE, RECQ-LIKE TYPE 2, RECQ2, RECQ PROTEIN-LIKE 3; COMPND 6 EC: 3.6.4.12; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 5'-D(*AP*GP*CP*GP*TP*CP*GP*AP*GP*AP*TP*CP)-3'; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 5'-D(*GP*AP*TP*CP*TP*CP*GP*AP*CP*GP*CP*TP*CP*DT *CP*CP*CP)- COMPND 14 3'; COMPND 15 CHAIN: C; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.A.NEWMAN,P.SAVITSKY,T.KROJER,F.VON DELFT,C.H.ARROWSMITH,A.EDWARDS, AUTHOR 2 C.BOUNTRA,O.GILEADI REVDAT 4 20-DEC-23 4CGZ 1 REMARK LINK REVDAT 3 10-JUN-15 4CGZ 1 JRNL REVDAT 2 06-MAY-15 4CGZ 1 JRNL REVDAT 1 11-DEC-13 4CGZ 0 JRNL AUTH J.A.NEWMAN,P.SAVITSKY,C.K.ALLERSTON,A.H.BIZARD,O.OZER, JRNL AUTH 2 K.SARLOS,Y.LIU,E.PARDON,J.STEYAERT,I.D.HICKSON,O.GILEADI JRNL TITL CRYSTAL STRUCTURE OF THE BLOOM'S SYNDROME HELICASE INDICATES JRNL TITL 2 A ROLE FOR THE HRDC DOMAIN IN CONFORMATIONAL CHANGES. JRNL REF NUCLEIC ACIDS RES. V. 43 5221 2015 JRNL REFN ISSN 0305-1048 JRNL PMID 25901030 JRNL DOI 10.1093/NAR/GKV373 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.220 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 23555 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2272 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.6514 - 8.0522 0.98 2657 137 0.1854 0.2357 REMARK 3 2 8.0522 - 6.3959 0.99 2707 130 0.2426 0.3048 REMARK 3 3 6.3959 - 5.5887 0.99 2718 121 0.2321 0.2369 REMARK 3 4 5.5887 - 5.0783 0.99 2712 141 0.2113 0.1980 REMARK 3 5 5.0783 - 4.7146 1.00 2731 133 0.2068 0.2159 REMARK 3 6 4.7146 - 4.4369 1.00 2663 175 0.2133 0.2061 REMARK 3 7 4.4369 - 4.2148 1.00 2684 159 0.2308 0.2650 REMARK 3 8 4.2148 - 4.0314 1.00 2716 141 0.2654 0.2811 REMARK 3 9 4.0314 - 3.8763 1.00 2734 104 0.2744 0.2940 REMARK 3 10 3.8763 - 3.7426 1.00 2695 143 0.3059 0.3380 REMARK 3 11 3.7426 - 3.6256 0.99 2718 131 0.3275 0.3674 REMARK 3 12 3.6256 - 3.5220 1.00 2709 137 0.3224 0.3785 REMARK 3 13 3.5220 - 3.4293 1.00 2740 135 0.3438 0.3306 REMARK 3 14 3.4293 - 3.3457 0.99 2654 163 0.3697 0.3955 REMARK 3 15 3.3457 - 3.2696 1.00 2704 172 0.3662 0.3601 REMARK 3 16 3.2696 - 3.2000 1.00 2639 150 0.3782 0.4259 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 146.8 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 178.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5757 REMARK 3 ANGLE : 1.133 7898 REMARK 3 CHIRALITY : 0.048 889 REMARK 3 PLANARITY : 0.005 907 REMARK 3 DIHEDRAL : 18.223 2183 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CGZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1290059093. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23593 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 48.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 1.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4CDG REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 80.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 21% PEG 4000, 0.1M HEPES PH 7.6, 5% 2 REMARK 280 -PROPANOL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z+1/2 REMARK 290 4555 Y,-X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.03000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.03000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 634 REMARK 465 MET A 635 REMARK 465 SER A 636 REMARK 465 SER A 1094 REMARK 465 GLN A 1095 REMARK 465 GLY A 1096 REMARK 465 MET A 1097 REMARK 465 ARG A 1098 REMARK 465 ASN A 1099 REMARK 465 ILE A 1100 REMARK 465 LYS A 1101 REMARK 465 HIS A 1102 REMARK 465 VAL A 1103 REMARK 465 GLY A 1104 REMARK 465 PRO A 1105 REMARK 465 ASN A 1194 REMARK 465 SER A 1195 REMARK 465 SER A 1196 REMARK 465 SER A 1197 REMARK 465 VAL A 1198 REMARK 465 LYS A 1199 REMARK 465 LYS A 1200 REMARK 465 GLN A 1201 REMARK 465 LYS A 1202 REMARK 465 ALA A 1203 REMARK 465 LEU A 1204 REMARK 465 VAL A 1205 REMARK 465 ALA A 1206 REMARK 465 PRO A 1291 REMARK 465 ALA A 1292 REMARK 465 GLU A 1293 REMARK 465 ASP A 1294 REMARK 465 SER A 1295 REMARK 465 SER A 1296 REMARK 465 PRO A 1297 REMARK 465 GLY A 1298 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 787 CD CE NZ REMARK 470 ARG A 813 CG CD NE CZ NH1 NH2 REMARK 470 MET A 816 CG SD CE REMARK 470 LYS A 820 CG CD CE NZ REMARK 470 ARG A 836 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 876 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR A1072 CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A1073 CG CD CE NZ REMARK 470 ASP A1079 CG OD1 OD2 REMARK 470 LYS A1082 CG CD CE NZ REMARK 470 LYS A1186 CG CD CE NZ REMARK 470 LYS A1207 CG CD CE NZ REMARK 470 LYS A1216 CE NZ REMARK 470 GLU A1251 CG CD OE1 OE2 REMARK 470 GLN A1283 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 1015 OG1 THR A 1018 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER A 744 O ASN A 1162 3554 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT C 3 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DG C 7 C3' - C2' - C1' ANGL. DEV. = -5.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 705 56.72 -117.19 REMARK 500 THR A 735 -169.78 -165.68 REMARK 500 ASP A 806 76.59 -150.57 REMARK 500 ASN A 834 109.43 -56.97 REMARK 500 ARG A 849 75.88 44.90 REMARK 500 ASP A 957 42.05 -107.86 REMARK 500 SER A 965 -151.27 -118.76 REMARK 500 HIS A1014 38.61 -78.23 REMARK 500 THR A1034 -53.10 -127.18 REMARK 500 PRO A1052 11.13 -68.20 REMARK 500 GLN A1127 63.80 -107.71 REMARK 500 SER A1128 -83.76 -115.74 REMARK 500 ILE A1130 41.41 -147.36 REMARK 500 ASN A1162 -155.24 -102.67 REMARK 500 MET A1172 -158.19 -121.29 REMARK 500 ASN A1184 -76.30 -102.25 REMARK 500 ILE A1240 -72.18 -94.19 REMARK 500 LEU A1253 15.38 57.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A2291 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1036 SG REMARK 620 2 CYS A1055 SG 110.7 REMARK 620 3 CYS A1063 SG 111.2 102.6 REMARK 620 4 CYS A1066 SG 114.4 118.5 97.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2291 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 2292 REMARK 999 REMARK 999 SEQUENCE REMARK 999 FIRST 2 RESIDUES REMAIN FOLLOWING CLEAVAGE OF PURIFICATION REMARK 999 TAG DBREF 4CGZ A 636 1298 UNP P54132 BLM_HUMAN 636 1298 DBREF 4CGZ B 1 12 PDB 4CGZ 4CGZ 1 12 DBREF 4CGZ C 1 17 PDB 4CGZ 4CGZ 1 17 SEQADV 4CGZ SER A 634 UNP P54132 EXPRESSION TAG SEQADV 4CGZ MET A 635 UNP P54132 EXPRESSION TAG SEQRES 1 A 665 SER MET SER ARG ASN LEU LYS HIS GLU ARG PHE GLN SER SEQRES 2 A 665 LEU SER PHE PRO HIS THR LYS GLU MET MET LYS ILE PHE SEQRES 3 A 665 HIS LYS LYS PHE GLY LEU HIS ASN PHE ARG THR ASN GLN SEQRES 4 A 665 LEU GLU ALA ILE ASN ALA ALA LEU LEU GLY GLU ASP CYS SEQRES 5 A 665 PHE ILE LEU MET PRO THR GLY GLY GLY LYS SER LEU CYS SEQRES 6 A 665 TYR GLN LEU PRO ALA CYS VAL SER PRO GLY VAL THR VAL SEQRES 7 A 665 VAL ILE SER PRO LEU ARG SER LEU ILE VAL ASP GLN VAL SEQRES 8 A 665 GLN LYS LEU THR SER LEU ASP ILE PRO ALA THR TYR LEU SEQRES 9 A 665 THR GLY ASP LYS THR ASP SER GLU ALA THR ASN ILE TYR SEQRES 10 A 665 LEU GLN LEU SER LYS LYS ASP PRO ILE ILE LYS LEU LEU SEQRES 11 A 665 TYR VAL THR PRO GLU LYS ILE CYS ALA SER ASN ARG LEU SEQRES 12 A 665 ILE SER THR LEU GLU ASN LEU TYR GLU ARG LYS LEU LEU SEQRES 13 A 665 ALA ARG PHE VAL ILE ASP GLU ALA HIS CYS VAL SER GLN SEQRES 14 A 665 TRP GLY HIS ASP PHE ARG GLN ASP TYR LYS ARG MET ASN SEQRES 15 A 665 MET LEU ARG GLN LYS PHE PRO SER VAL PRO VAL MET ALA SEQRES 16 A 665 LEU THR ALA THR ALA ASN PRO ARG VAL GLN LYS ASP ILE SEQRES 17 A 665 LEU THR GLN LEU LYS ILE LEU ARG PRO GLN VAL PHE SER SEQRES 18 A 665 MET SER PHE ASN ARG HIS ASN LEU LYS TYR TYR VAL LEU SEQRES 19 A 665 PRO LYS LYS PRO LYS LYS VAL ALA PHE ASP CYS LEU GLU SEQRES 20 A 665 TRP ILE ARG LYS HIS HIS PRO TYR ASP SER GLY ILE ILE SEQRES 21 A 665 TYR CYS LEU SER ARG ARG GLU CYS ASP THR MET ALA ASP SEQRES 22 A 665 THR LEU GLN ARG ASP GLY LEU ALA ALA LEU ALA TYR HIS SEQRES 23 A 665 ALA GLY LEU SER ASP SER ALA ARG ASP GLU VAL GLN GLN SEQRES 24 A 665 LYS TRP ILE ASN GLN ASP GLY CYS GLN VAL ILE CYS ALA SEQRES 25 A 665 THR ILE ALA PHE GLY MET GLY ILE ASP LYS PRO ASP VAL SEQRES 26 A 665 ARG PHE VAL ILE HIS ALA SER LEU PRO LYS SER VAL GLU SEQRES 27 A 665 GLY TYR TYR GLN GLU SER GLY ARG ALA GLY ARG ASP GLY SEQRES 28 A 665 GLU ILE SER HIS CYS LEU LEU PHE TYR THR TYR HIS ASP SEQRES 29 A 665 VAL THR ARG LEU LYS ARG LEU ILE MET MET GLU LYS ASP SEQRES 30 A 665 GLY ASN HIS HIS THR ARG GLU THR HIS PHE ASN ASN LEU SEQRES 31 A 665 TYR SER MET VAL HIS TYR CYS GLU ASN ILE THR GLU CYS SEQRES 32 A 665 ARG ARG ILE GLN LEU LEU ALA TYR PHE GLY GLU ASN GLY SEQRES 33 A 665 PHE ASN PRO ASP PHE CYS LYS LYS HIS PRO ASP VAL SER SEQRES 34 A 665 CYS ASP ASN CYS CYS LYS THR LYS ASP TYR LYS THR ARG SEQRES 35 A 665 ASP VAL THR ASP ASP VAL LYS SER ILE VAL ARG PHE VAL SEQRES 36 A 665 GLN GLU HIS SER SER SER GLN GLY MET ARG ASN ILE LYS SEQRES 37 A 665 HIS VAL GLY PRO SER GLY ARG PHE THR MET ASN MET LEU SEQRES 38 A 665 VAL ASP ILE PHE LEU GLY SER LYS SER ALA LYS ILE GLN SEQRES 39 A 665 SER GLY ILE PHE GLY LYS GLY SER ALA TYR SER ARG HIS SEQRES 40 A 665 ASN ALA GLU ARG LEU PHE LYS LYS LEU ILE LEU ASP LYS SEQRES 41 A 665 ILE LEU ASP GLU ASP LEU TYR ILE ASN ALA ASN ASP GLN SEQRES 42 A 665 ALA ILE ALA TYR VAL MET LEU GLY ASN LYS ALA GLN THR SEQRES 43 A 665 VAL LEU ASN GLY ASN LEU LYS VAL ASP PHE MET GLU THR SEQRES 44 A 665 GLU ASN SER SER SER VAL LYS LYS GLN LYS ALA LEU VAL SEQRES 45 A 665 ALA LYS VAL SER GLN ARG GLU GLU MET VAL LYS LYS CYS SEQRES 46 A 665 LEU GLY GLU LEU THR GLU VAL CYS LYS SER LEU GLY LYS SEQRES 47 A 665 VAL PHE GLY VAL HIS TYR PHE ASN ILE PHE ASN THR VAL SEQRES 48 A 665 THR LEU LYS LYS LEU ALA GLU SER LEU SER SER ASP PRO SEQRES 49 A 665 GLU VAL LEU LEU GLN ILE ASP GLY VAL THR GLU ASP LYS SEQRES 50 A 665 LEU GLU LYS TYR GLY ALA GLU VAL ILE SER VAL LEU GLN SEQRES 51 A 665 LYS TYR SER GLU TRP THR SER PRO ALA GLU ASP SER SER SEQRES 52 A 665 PRO GLY SEQRES 1 B 12 DA DG DC DG DT DC DG DA DG DA DT DC SEQRES 1 C 17 DG DA DT DC DT DC DG DA DC DG DC DT DC SEQRES 2 C 17 DT DC DC DC HET ZN A2291 1 HET ADP A2292 27 HETNAM ZN ZINC ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 4 ZN ZN 2+ FORMUL 5 ADP C10 H15 N5 O10 P2 HELIX 1 1 HIS A 641 GLN A 645 5 5 HELIX 2 2 HIS A 651 LYS A 662 1 12 HELIX 3 3 ASN A 671 LEU A 680 1 10 HELIX 4 4 SER A 696 VAL A 705 1 10 HELIX 5 5 LEU A 716 SER A 729 1 14 HELIX 6 6 THR A 742 LYS A 755 1 14 HELIX 7 7 THR A 766 SER A 773 1 8 HELIX 8 8 SER A 773 ARG A 786 1 14 HELIX 9 9 GLU A 796 SER A 801 5 6 HELIX 10 10 ARG A 808 ARG A 813 5 6 HELIX 11 11 MET A 814 PHE A 821 1 8 HELIX 12 12 ASN A 834 LYS A 846 1 13 HELIX 13 13 LYS A 873 HIS A 886 1 14 HELIX 14 14 SER A 897 ARG A 910 1 14 HELIX 15 15 SER A 923 ASN A 936 1 14 HELIX 16 16 THR A 946 MET A 951 1 6 HELIX 17 17 SER A 969 ARG A 979 1 11 HELIX 18 18 TYR A 995 GLU A 1008 1 14 HELIX 19 19 THR A 1015 ASN A 1032 1 18 HELIX 20 20 CYS A 1036 TYR A 1044 1 9 HELIX 21 21 ASP A 1053 HIS A 1058 1 6 HELIX 22 22 PRO A 1059 SER A 1062 5 4 HELIX 23 23 CYS A 1063 LYS A 1068 1 6 HELIX 24 24 VAL A 1077 SER A 1093 1 17 HELIX 25 25 THR A 1110 GLY A 1120 1 11 HELIX 26 26 HIS A 1140 LYS A 1148 1 9 HELIX 27 27 LYS A 1176 ASN A 1182 1 7 HELIX 28 28 SER A 1209 GLY A 1234 1 26 HELIX 29 29 HIS A 1236 ILE A 1240 5 5 HELIX 30 30 ASN A 1242 LEU A 1253 1 12 HELIX 31 31 ASP A 1256 LEU A 1261 1 6 HELIX 32 32 ASP A 1269 TYR A 1274 1 6 HELIX 33 33 TYR A 1274 LYS A 1284 1 11 HELIX 34 34 TYR A 1285 THR A 1289 5 5 SHEET 1 AA 7 ALA A 734 LEU A 737 0 SHEET 2 AA 7 LEU A 762 VAL A 765 1 O LEU A 762 N THR A 735 SHEET 3 AA 7 VAL A 709 ILE A 713 1 O THR A 710 N LEU A 763 SHEET 4 AA 7 LEU A 789 ILE A 794 1 N ALA A 790 O VAL A 709 SHEET 5 AA 7 VAL A 826 THR A 830 1 O MET A 827 N ILE A 794 SHEET 6 AA 7 CYS A 685 LEU A 688 1 O CYS A 685 N ALA A 828 SHEET 7 AA 7 GLN A 851 PHE A 853 1 O GLN A 851 N PHE A 686 SHEET 1 AB 6 LEU A 862 PRO A 868 0 SHEET 2 AB 6 SER A 987 TYR A 993 1 O SER A 987 N LYS A 863 SHEET 3 AB 6 PHE A 960 HIS A 963 1 O VAL A 961 N LEU A 990 SHEET 4 AB 6 GLY A 891 TYR A 894 1 O ILE A 892 N ILE A 962 SHEET 5 AB 6 VAL A 942 ALA A 945 1 O ILE A 943 N ILE A 893 SHEET 6 AB 6 ALA A 915 TYR A 918 1 O LEU A 916 N CYS A 944 SHEET 1 AC 2 ARG A1075 ASP A1076 0 SHEET 2 AC 2 ASP A1188 PHE A1189 -1 O PHE A1189 N ARG A1075 SHEET 1 AD 2 GLU A1157 TYR A1160 0 SHEET 2 AD 2 ILE A1168 VAL A1171 -1 O ILE A1168 N TYR A1160 LINK SG CYS A1036 ZN ZN A2291 1555 1555 2.35 LINK SG CYS A1055 ZN ZN A2291 1555 1555 2.41 LINK SG CYS A1063 ZN ZN A2291 1555 1555 2.47 LINK SG CYS A1066 ZN ZN A2291 1555 1555 2.53 SITE 1 AC1 4 CYS A1036 CYS A1055 CYS A1063 CYS A1066 SITE 1 AC2 11 LEU A 665 ASN A 667 ARG A 669 GLN A 672 SITE 2 AC2 11 GLY A 692 GLY A 693 GLY A 694 LYS A 695 SITE 3 AC2 11 SER A 696 ARG A 982 ASN A1242 CRYST1 149.530 149.530 64.060 90.00 90.00 90.00 P 42 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006688 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006688 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015610 0.00000