HEADER TRANSFERASE 16-DEC-13 4CIT TITLE CRYSTAL STRUCTURE OF THE FIRST BACTERIAL VANADIUM DEPENDANT TITLE 2 IODOPEROXIDASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: VANADIUM-DEPENDENT HALOPEROXIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: VANADIUM DEPENDENT IODOPEROXIDASE; COMPND 5 EC: 1.11.1.-, 1.11.1.8; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: VANADATE COFACTOR LINKED THROUGH HIS 416 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZOBELLIA GALACTANIVORANS; SOURCE 3 ORGANISM_TAXID: 63186; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PFO4; SOURCE 9 OTHER_DETAILS: GERMAN COLLECTION OF MICROORGANISMS (DSM) AND SOURCE 10 AVAILABLE AT STATION BIOLOGIQUE DE ROSCOFF, FRANCE KEYWDS TRANSFERASE, IODOPEROXIDASE, MARINE BACTERIUM EXPDTA X-RAY DIFFRACTION AUTHOR E.REBUFFET,L.DELAGE,J.B.FOURNIER,J.RZONCA,P.POTIN,G.MICHEL,M.CZJZEK, AUTHOR 2 C.LEBLANC REVDAT 3 03-JUN-20 4CIT 1 REMARK HELIX SHEET LINK REVDAT 2 26-NOV-14 4CIT 1 JRNL REVDAT 1 08-OCT-14 4CIT 0 JRNL AUTH J.B.FOURNIER,E.REBUFFET,L.DELAGE,R.GRIJOL,L.MESLET-CLADIERE, JRNL AUTH 2 J.RZONCA,P.POTIN,G.MICHEL,M.CZJZEK,C.LEBLANC JRNL TITL THE BACTERIAL VANADIUM IODOPEROXIDASE FROM THE MARINE JRNL TITL 2 FLAVOBACTERIACEAE ZOBELLIA GALACTANIVORANS REVEALS NOVEL JRNL TITL 3 MOLECULAR AND EVOLUTIONARY FEATURES OF HALIDE SPECIFICITY IN JRNL TITL 4 THIS ENZYME FAMILY. JRNL REF APPL.ENVIRON.MICROBIOL. V. 80 7561 2014 JRNL REFN ISSN 0099-2240 JRNL PMID 25261522 JRNL DOI 10.1128/AEM.02430-14 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 37341 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1983 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2539 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.1800 REMARK 3 BIN FREE R VALUE SET COUNT : 129 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3255 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 307 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.103 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.104 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.057 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.789 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3418 ; 0.022 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3167 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4666 ; 1.935 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7322 ; 1.011 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 430 ; 5.722 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 160 ;30.172 ;24.375 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 555 ;13.606 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;17.367 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 504 ; 0.141 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3907 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 781 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 4CIT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1290059231. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 198448 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.100 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.740 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 MICROL OF ENZYME AND 0.5 MICROL OF REMARK 280 RESERVOIR SOLUTION CONTAINING 23 % PEG 1150, 100 MM PHOSPHATE/ REMARK 280 CITRATE PH 4.2 AND 2 % GLYCEROL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.40000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.70000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.20000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.70000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.40000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.20000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 3 REMARK 465 ILE A 4 REMARK 465 LEU A 5 REMARK 465 ILE A 6 REMARK 465 ALA A 7 REMARK 465 LEU A 8 REMARK 465 ILE A 9 REMARK 465 SER A 10 REMARK 465 PHE A 11 REMARK 465 ALA A 12 REMARK 465 PHE A 13 REMARK 465 ALA A 14 REMARK 465 VAL A 15 REMARK 465 SER A 16 REMARK 465 CYS A 17 REMARK 465 LYS A 18 REMARK 465 ALA A 19 REMARK 465 PRO A 20 REMARK 465 GLN A 21 REMARK 465 PHE A 173 REMARK 465 THR A 174 REMARK 465 VAL A 175 REMARK 465 ASP A 176 REMARK 465 ALA A 177 REMARK 465 ASP A 178 REMARK 465 VAL A 266 REMARK 465 THR A 267 REMARK 465 ARG A 268 REMARK 465 GLY A 269 REMARK 465 HIS A 270 REMARK 465 LEU A 271 REMARK 465 MET A 272 REMARK 465 PHE A 273 REMARK 465 ALA A 274 REMARK 465 THR A 275 REMARK 465 ALA A 448 REMARK 465 GLN A 449 REMARK 465 ASN A 450 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 OCS A 260 OD3 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 172 CG CD CE NZ REMARK 480 ASP A 179 CG OD1 OD2 REMARK 480 GLU A 224 CG CD OE1 OE2 REMARK 480 LYS A 445 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 V VO4 A 1449 O4 VO4 A 1453 1.58 REMARK 500 O1 VO4 A 1450 O HOH A 2267 1.96 REMARK 500 O HOH A 2047 O HOH A 2059 2.07 REMARK 500 OE2 GLU A 119 O HOH A 2099 2.18 REMARK 500 O HOH A 2197 O HOH A 2252 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 179 CB ASP A 179 CG 0.379 REMARK 500 ARG A 293 CZ ARG A 293 NH1 0.087 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 179 CA - CB - CG ANGL. DEV. = -17.5 DEGREES REMARK 500 ARG A 293 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 326 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 326 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 23 39.03 -150.88 REMARK 500 ASN A 137 83.17 -158.46 REMARK 500 ASN A 163 -1.19 79.42 REMARK 500 PRO A 262 4.21 -69.97 REMARK 500 SER A 443 80.14 -156.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 VO4 A 1453 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1454 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 70 O REMARK 620 2 ASN A 73 O 97.1 REMARK 620 3 TYR A 76 O 102.4 87.7 REMARK 620 4 HOH A2047 O 80.0 176.9 91.8 REMARK 620 5 HOH A2052 O 162.0 99.5 85.2 83.5 REMARK 620 6 HOH A2048 O 90.2 87.6 167.0 93.6 83.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 VO4 A1449 V REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 416 NE2 REMARK 620 2 VO4 A1451 O2 83.3 REMARK 620 3 VO4 A1452 O3 88.3 115.5 REMARK 620 4 VO4 A1450 O1 173.3 90.8 91.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VO4 A 1449 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VO4 A 1450 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VO4 A 1451 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VO4 A 1452 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VO4 A 1453 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 1454 DBREF 4CIT A 1 449 UNP G0LAH5 G0LAH5_ZOBGA 1 450 SEQADV 4CIT HIS A -7 UNP G0LAH5 EXPRESSION TAG SEQADV 4CIT HIS A -6 UNP G0LAH5 EXPRESSION TAG SEQADV 4CIT HIS A -5 UNP G0LAH5 EXPRESSION TAG SEQADV 4CIT HIS A -4 UNP G0LAH5 EXPRESSION TAG SEQADV 4CIT HIS A -3 UNP G0LAH5 EXPRESSION TAG SEQADV 4CIT HIS A -2 UNP G0LAH5 EXPRESSION TAG SEQADV 4CIT GLY A -1 UNP G0LAH5 EXPRESSION TAG SEQADV 4CIT SER A 0 UNP G0LAH5 EXPRESSION TAG SEQRES 1 A 458 HIS HIS HIS HIS HIS HIS GLY SER MET LYS LYS ILE LEU SEQRES 2 A 458 ILE ALA LEU ILE SER PHE ALA PHE ALA VAL SER CYS LYS SEQRES 3 A 458 ALA PRO GLN LYS GLU GLU PRO ILE ASN ILE THR PRO GLU SEQRES 4 A 458 GLU LEU ASP ALA SER ILE ASP ARG VAL THR GLU ILE MET SEQRES 5 A 458 ILE HIS ASP ILE PHE SER PRO PRO VAL ALA SER ARG ILE SEQRES 6 A 458 PHE ALA TYR PRO ASN VAL ALA ALA TYR GLU ILE VAL ALA SEQRES 7 A 458 ALA THR ASN ASP ASN TYR ASN SER LEU ALA GLY GLN LEU SEQRES 8 A 458 ASN GLY LEU THR ALA ILE PRO GLU PRO ASP THR THR LYS SEQRES 9 A 458 THR ILE ASN TYR GLU LEU ALA ALA VAL VAL ALA HIS MET SEQRES 10 A 458 GLU LEU SER LYS ARG LEU ILE PHE SER GLU ASP ARG MET SEQRES 11 A 458 GLU SER LEU ARG ASP SER LEU TYR MET VAL TRP GLU GLY SEQRES 12 A 458 LYS ASN PRO VAL LEU PHE SER ASP SER LYS ALA TYR GLY SEQRES 13 A 458 LEU GLN VAL ALA ASP HIS ILE GLY GLU TRP MET ASN LYS SEQRES 14 A 458 ASP ASN TYR ALA GLN THR ARG THR MET PRO LYS PHE THR SEQRES 15 A 458 VAL ASP ALA ASP ASP PRO GLY ARG TRP GLN PRO THR PRO SEQRES 16 A 458 PRO ALA TYR MET ASP GLY ILE GLU PRO HIS TRP ASN LYS SEQRES 17 A 458 ILE ARG PRO PHE VAL LEU ASP SER ALA ALA GLN PHE LYS SEQRES 18 A 458 PRO VAL PRO PRO PRO ALA TYR SER LEU GLU GLU ASP SER SEQRES 19 A 458 ALA PHE TYR LYS GLU LEU LYS GLU VAL TYR ASP VAL ARG SEQRES 20 A 458 ASN LYS ILE THR GLU GLU GLY ASP SER SER GLU GLU ILE SEQRES 21 A 458 GLN ILE ALA ARG PHE TRP ASP OCS ASN PRO TYR VAL SER SEQRES 22 A 458 VAL THR ARG GLY HIS LEU MET PHE ALA THR LYS LYS ILE SEQRES 23 A 458 THR PRO GLY ALA HIS TRP MET GLY ILE ALA LYS ILE ALA SEQRES 24 A 458 ALA ARG LYS THR ASN SER ASP PHE ALA LYS THR LEU PHE SEQRES 25 A 458 ALA TYR THR LYS ALA SER VAL ALA MET ALA ASP ALA PHE SEQRES 26 A 458 ILE SER CYS TRP ASP GLU LYS TYR ARG SER ASN LEU ILE SEQRES 27 A 458 ARG PRO GLU THR VAL ILE ASN GLN HIS ILE ASP ASP SER SEQRES 28 A 458 TRP LYS PRO VAL LEU GLN THR PRO PRO PHE PRO GLU TYR SEQRES 29 A 458 THR SER GLY HIS SER VAL VAL SER GLY ALA ALA SER VAL SEQRES 30 A 458 VAL LEU THR GLU VAL PHE GLY ASP ASN PHE SER PHE ASP SEQRES 31 A 458 ASP ASP THR GLU VAL PRO TYR GLY LEU PRO ILE ARG SER SEQRES 32 A 458 PHE LYS SER PHE LYS GLN ALA ALA ASP GLU ALA ALA ILE SEQRES 33 A 458 SER ARG MET TYR GLY GLY ILE HIS TYR ARG ALA ALA ILE SEQRES 34 A 458 GLU VAL GLY VAL LYS GLN GLY ARG ASP LEU GLY THR PHE SEQRES 35 A 458 VAL VAL ASN LYS LEU HIS MET LEU SER ASP LYS LYS VAL SEQRES 36 A 458 ALA GLN ASN MODRES 4CIT OCS A 260 CYS CYSTEINESULFONIC ACID HET OCS A 260 11 HET VO4 A1449 1 HET VO4 A1450 1 HET VO4 A1451 1 HET VO4 A1452 1 HET VO4 A1453 1 HET NA A1454 1 HETNAM OCS CYSTEINESULFONIC ACID HETNAM VO4 VANADATE ION HETNAM NA SODIUM ION FORMUL 1 OCS C3 H7 N O5 S FORMUL 2 VO4 5(O4 V 3-) FORMUL 7 NA NA 1+ FORMUL 8 HOH *307(H2 O) HELIX 1 AA1 THR A 29 ILE A 48 1 20 HELIX 2 AA2 SER A 50 ASN A 73 1 24 HELIX 3 AA3 ASN A 99 ILE A 116 1 18 HELIX 4 AA4 GLU A 119 ASN A 137 1 19 HELIX 5 AA5 ASN A 137 ASN A 160 1 24 HELIX 6 AA6 ASN A 163 ARG A 168 1 6 HELIX 7 AA7 HIS A 197 ILE A 201 5 5 HELIX 8 AA8 SER A 226 GLY A 246 1 21 HELIX 9 AA9 SER A 249 ASP A 259 1 11 HELIX 10 AB1 THR A 279 THR A 295 1 17 HELIX 11 AB2 ASP A 298 ASN A 328 1 31 HELIX 12 AB3 ARG A 331 ILE A 340 1 10 HELIX 13 AB4 SER A 358 GLY A 376 1 19 HELIX 14 AB5 GLU A 386 GLY A 390 5 5 HELIX 15 AB6 SER A 398 GLY A 413 1 16 HELIX 16 AB7 TYR A 417 LEU A 439 1 23 SHEET 1 AA1 2 PHE A 381 ASP A 383 0 SHEET 2 AA1 2 ARG A 394 PHE A 396 -1 O ARG A 394 N ASP A 383 LINK O ALA A 70 NA NA A1454 1555 1555 2.22 LINK O ASN A 73 NA NA A1454 1555 1555 2.37 LINK O TYR A 76 NA NA A1454 1555 1555 2.32 LINK C ASP A 259 N OCS A 260 1555 1555 1.32 LINK C OCS A 260 N ASN A 261 1555 1555 1.32 LINK NE2 HIS A 416 V VO4 A1449 1555 1555 2.16 LINK V VO4 A1449 O2 VO4 A1451 1555 1555 1.87 LINK V VO4 A1449 O3 VO4 A1452 1555 1555 1.72 LINK V VO4 A1449 O1 VO4 A1450 1555 1555 2.27 LINK NA NA A1454 O HOH A2047 1555 1555 2.89 LINK NA NA A1454 O HOH A2052 1555 1555 2.39 LINK NA NA A1454 O HOH A2048 1555 1555 2.34 CISPEP 1 PRO A 187 PRO A 188 0 5.64 CISPEP 2 TYR A 356 THR A 357 0 -4.65 SITE 1 AC1 6 ARG A 410 HIS A 416 VO4 A1450 VO4 A1451 SITE 2 AC1 6 VO4 A1452 VO4 A1453 SITE 1 AC2 7 PHE A 353 HIS A 360 VO4 A1449 VO4 A1451 SITE 2 AC2 7 VO4 A1452 VO4 A1453 HOH A2267 SITE 1 AC3 9 SER A 358 GLY A 359 HIS A 360 ARG A 410 SITE 2 AC3 9 HIS A 416 VO4 A1449 VO4 A1450 VO4 A1452 SITE 3 AC3 9 VO4 A1453 SITE 1 AC4 9 LYS A 324 PHE A 353 SER A 358 GLY A 359 SITE 2 AC4 9 HIS A 416 VO4 A1449 VO4 A1450 VO4 A1451 SITE 3 AC4 9 VO4 A1453 SITE 1 AC5 8 ARG A 331 PRO A 351 ARG A 410 HIS A 416 SITE 2 AC5 8 VO4 A1449 VO4 A1450 VO4 A1451 VO4 A1452 SITE 1 AC6 6 ALA A 70 ASN A 73 TYR A 76 HOH A2047 SITE 2 AC6 6 HOH A2048 HOH A2052 CRYST1 42.800 84.400 117.400 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023364 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011848 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008518 0.00000