HEADER ISOMERASE 19-DEC-13 4CJ6 TITLE CRYSTAL STRUCTURE OF THE COMPLEX OF THE CELLULAR RETINAL BINDING TITLE 2 PROTEIN MUTANT R234W WITH 9-CIS-RETINAL COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINALDEHYDE-BINDING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CELLULAR RETINALDEHYDE-BINDING PROTEIN, CELLULAR COMPND 5 RETINALDEHYDE BINDING PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS ISOMERASE, VISUAL CYCLE, 9-CIS-RETINAL EXPDTA X-RAY DIFFRACTION AUTHOR C.S.BOLZE,R.E.HELBLING,R.L.OWEN,A.R.PEARSON,G.POMPIDOR,F.DWORKOWSKI, AUTHOR 2 M.R.FUCHS,J.FURRER,M.GOLCZAK,K.PALCZEWSKI,M.CASCELLA,A.STOCKER REVDAT 3 20-DEC-23 4CJ6 1 REMARK REVDAT 2 22-JAN-14 4CJ6 1 JRNL REVDAT 1 08-JAN-14 4CJ6 0 JRNL AUTH C.S.BOLZE,R.E.HELBLING,R.L.OWEN,A.R.PEARSON,G.POMPIDOR, JRNL AUTH 2 F.DWORKOWSKI,M.R.FUCHS,J.FURRER,M.GOLCZAK,K.PALCZEWSKI, JRNL AUTH 3 M.CASCELLA,A.STOCKER JRNL TITL HUMAN CELLULAR RETINALDEHYDE-BINDING PROTEIN HAS SECONDARY JRNL TITL 2 THERMAL 9-CIS-RETINAL ISOMERASE ACTIVITY. JRNL REF J.AM.CHEM.SOC. V. 136 137 2014 JRNL REFN ISSN 0002-7863 JRNL PMID 24328211 JRNL DOI 10.1021/JA411366W REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 25013 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2502 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.7573 - 4.9663 0.99 1305 146 0.1825 0.1960 REMARK 3 2 4.9663 - 3.9426 1.00 1284 142 0.1369 0.1568 REMARK 3 3 3.9426 - 3.4445 0.99 1263 140 0.1414 0.1698 REMARK 3 4 3.4445 - 3.1296 1.00 1262 141 0.1470 0.1767 REMARK 3 5 3.1296 - 2.9053 1.00 1264 140 0.1571 0.2135 REMARK 3 6 2.9053 - 2.7341 1.00 1282 143 0.1699 0.1981 REMARK 3 7 2.7341 - 2.5972 1.00 1250 139 0.1711 0.2187 REMARK 3 8 2.5972 - 2.4841 1.00 1259 139 0.1773 0.2087 REMARK 3 9 2.4841 - 2.3885 1.00 1246 139 0.1641 0.2028 REMARK 3 10 2.3885 - 2.3061 1.00 1275 142 0.1592 0.2009 REMARK 3 11 2.3061 - 2.2340 1.00 1267 140 0.1725 0.2202 REMARK 3 12 2.2340 - 2.1701 1.00 1241 138 0.1661 0.2213 REMARK 3 13 2.1701 - 2.1130 1.00 1252 139 0.1695 0.2155 REMARK 3 14 2.1130 - 2.0614 1.00 1277 142 0.1723 0.2256 REMARK 3 15 2.0614 - 2.0146 1.00 1251 139 0.1692 0.2087 REMARK 3 16 2.0146 - 1.9717 1.00 1263 140 0.1830 0.2107 REMARK 3 17 1.9717 - 1.9323 1.00 1247 139 0.1972 0.2203 REMARK 3 18 1.9323 - 1.8958 0.80 1023 114 0.2380 0.2472 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 58.87 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.63170 REMARK 3 B22 (A**2) : -2.91660 REMARK 3 B33 (A**2) : -4.71510 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.44980 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2115 REMARK 3 ANGLE : 0.841 2855 REMARK 3 CHIRALITY : 0.055 300 REMARK 3 PLANARITY : 0.003 370 REMARK 3 DIHEDRAL : 16.387 795 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 57:85) REMARK 3 ORIGIN FOR THE GROUP (A): -14.3369 31.9499 8.9848 REMARK 3 T TENSOR REMARK 3 T11: 0.2981 T22: 0.1423 REMARK 3 T33: 0.2513 T12: 0.1563 REMARK 3 T13: -0.0870 T23: -0.0356 REMARK 3 L TENSOR REMARK 3 L11: 0.2863 L22: -0.8070 REMARK 3 L33: 5.1607 L12: 0.8936 REMARK 3 L13: 0.9129 L23: 0.1310 REMARK 3 S TENSOR REMARK 3 S11: -0.1549 S12: 0.0452 S13: 0.3945 REMARK 3 S21: -0.1084 S22: -0.0993 S23: 0.2382 REMARK 3 S31: -0.8851 S32: -0.2117 S33: 0.2938 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 86:98) REMARK 3 ORIGIN FOR THE GROUP (A): -17.1863 23.5800 13.8063 REMARK 3 T TENSOR REMARK 3 T11: 0.0740 T22: 0.1990 REMARK 3 T33: 0.2120 T12: 0.0922 REMARK 3 T13: -0.0044 T23: -0.0652 REMARK 3 L TENSOR REMARK 3 L11: 4.3053 L22: 1.6617 REMARK 3 L33: 1.4195 L12: -1.6226 REMARK 3 L13: -0.8597 L23: 0.1731 REMARK 3 S TENSOR REMARK 3 S11: 0.1595 S12: 0.6543 S13: -0.6978 REMARK 3 S21: 0.0453 S22: 0.0372 S23: 0.4534 REMARK 3 S31: -0.2022 S32: -0.3200 S33: -0.0998 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 99:143) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8733 16.4298 12.8980 REMARK 3 T TENSOR REMARK 3 T11: 0.0475 T22: 0.1173 REMARK 3 T33: 0.0963 T12: 0.0022 REMARK 3 T13: 0.0270 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: -0.1262 L22: 0.5076 REMARK 3 L33: 1.2756 L12: -0.3005 REMARK 3 L13: 0.4507 L23: 0.1640 REMARK 3 S TENSOR REMARK 3 S11: 0.0261 S12: -0.0488 S13: -0.0071 REMARK 3 S21: -0.0310 S22: -0.0783 S23: 0.2215 REMARK 3 S31: -0.1067 S32: -0.2687 S33: 0.0112 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 144:185) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4660 4.6655 20.5590 REMARK 3 T TENSOR REMARK 3 T11: 0.1119 T22: 0.0403 REMARK 3 T33: 0.0915 T12: -0.0340 REMARK 3 T13: 0.0134 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 1.4353 L22: 1.1464 REMARK 3 L33: 1.9986 L12: 0.1384 REMARK 3 L13: 1.0779 L23: -0.5242 REMARK 3 S TENSOR REMARK 3 S11: 0.0902 S12: -0.0252 S13: -0.2170 REMARK 3 S21: 0.2103 S22: 0.0469 S23: 0.0364 REMARK 3 S31: 0.2393 S32: -0.0575 S33: -0.1183 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 186:255) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3083 7.4464 15.0599 REMARK 3 T TENSOR REMARK 3 T11: 0.0542 T22: 0.0740 REMARK 3 T33: 0.0744 T12: 0.0077 REMARK 3 T13: 0.0121 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.4999 L22: 0.6442 REMARK 3 L33: 0.6306 L12: -0.3420 REMARK 3 L13: 0.4140 L23: -0.0786 REMARK 3 S TENSOR REMARK 3 S11: 0.0238 S12: 0.1314 S13: -0.0075 REMARK 3 S21: 0.0678 S22: -0.0468 S23: -0.0139 REMARK 3 S31: 0.0294 S32: 0.0910 S33: 0.0095 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 256:295) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1620 8.0125 24.3525 REMARK 3 T TENSOR REMARK 3 T11: 0.0905 T22: 0.0743 REMARK 3 T33: 0.1118 T12: -0.0247 REMARK 3 T13: -0.0222 T23: 0.0155 REMARK 3 L TENSOR REMARK 3 L11: 0.2191 L22: 1.1090 REMARK 3 L33: 0.3304 L12: -0.1958 REMARK 3 L13: 0.6117 L23: 0.5279 REMARK 3 S TENSOR REMARK 3 S11: -0.0299 S12: 0.0355 S13: 0.0173 REMARK 3 S21: 0.2764 S22: -0.0170 S23: -0.2060 REMARK 3 S31: -0.0232 S32: 0.1604 S33: 0.0406 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 296:306) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3359 3.3341 29.3839 REMARK 3 T TENSOR REMARK 3 T11: 0.1901 T22: 0.1457 REMARK 3 T33: 0.0474 T12: -0.1286 REMARK 3 T13: 0.2676 T23: 0.1319 REMARK 3 L TENSOR REMARK 3 L11: 4.2506 L22: 0.6650 REMARK 3 L33: 2.4857 L12: 0.0001 REMARK 3 L13: -0.6505 L23: -0.6498 REMARK 3 S TENSOR REMARK 3 S11: 0.7640 S12: -0.5752 S13: 0.2772 REMARK 3 S21: 0.2434 S22: -0.0010 S23: 0.1460 REMARK 3 S31: -0.2766 S32: -0.1711 S33: -0.5849 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CJ6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1290059260. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19606 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 44.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.4800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.120 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3HX3 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 43.93500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.95900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 43.93500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.95900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2232 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2235 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 GLY A 4 REMARK 465 VAL A 5 REMARK 465 GLY A 6 REMARK 465 THR A 7 REMARK 465 PHE A 8 REMARK 465 ARG A 9 REMARK 465 MET A 10 REMARK 465 VAL A 11 REMARK 465 PRO A 12 REMARK 465 GLU A 13 REMARK 465 GLU A 14 REMARK 465 GLU A 15 REMARK 465 GLN A 16 REMARK 465 GLU A 17 REMARK 465 LEU A 18 REMARK 465 ARG A 19 REMARK 465 ALA A 20 REMARK 465 GLN A 21 REMARK 465 LEU A 22 REMARK 465 GLU A 23 REMARK 465 GLN A 24 REMARK 465 LEU A 25 REMARK 465 THR A 26 REMARK 465 THR A 27 REMARK 465 LYS A 28 REMARK 465 ASP A 29 REMARK 465 HIS A 30 REMARK 465 GLY A 31 REMARK 465 PRO A 32 REMARK 465 VAL A 33 REMARK 465 PHE A 34 REMARK 465 GLY A 35 REMARK 465 PRO A 36 REMARK 465 CYS A 37 REMARK 465 SER A 38 REMARK 465 GLN A 39 REMARK 465 LEU A 40 REMARK 465 PRO A 41 REMARK 465 ARG A 42 REMARK 465 HIS A 43 REMARK 465 THR A 44 REMARK 465 LEU A 45 REMARK 465 GLN A 46 REMARK 465 LYS A 47 REMARK 465 ALA A 48 REMARK 465 LYS A 49 REMARK 465 ASP A 50 REMARK 465 GLU A 51 REMARK 465 LEU A 52 REMARK 465 ASN A 53 REMARK 465 GLU A 54 REMARK 465 ARG A 55 REMARK 465 GLU A 56 REMARK 465 GLY A 307 REMARK 465 PRO A 308 REMARK 465 GLN A 309 REMARK 465 ALA A 310 REMARK 465 GLN A 311 REMARK 465 ALA A 312 REMARK 465 GLU A 313 REMARK 465 ASN A 314 REMARK 465 THR A 315 REMARK 465 ALA A 316 REMARK 465 PHE A 317 REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2075 DISTANCE = 6.06 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RET A 1307 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CIZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE COMPLEX OF THE CELLULAR RETINAL BINDING REMARK 900 PROTEIN WITH 9-CIS-RETINAL DBREF 4CJ6 A 1 317 UNP P12271 RLBP1_HUMAN 1 317 SEQADV 4CJ6 TRP A 234 UNP P12271 ARG 234 VARIANT SEQRES 1 A 317 MET SER GLU GLY VAL GLY THR PHE ARG MET VAL PRO GLU SEQRES 2 A 317 GLU GLU GLN GLU LEU ARG ALA GLN LEU GLU GLN LEU THR SEQRES 3 A 317 THR LYS ASP HIS GLY PRO VAL PHE GLY PRO CYS SER GLN SEQRES 4 A 317 LEU PRO ARG HIS THR LEU GLN LYS ALA LYS ASP GLU LEU SEQRES 5 A 317 ASN GLU ARG GLU GLU THR ARG GLU GLU ALA VAL ARG GLU SEQRES 6 A 317 LEU GLN GLU MET VAL GLN ALA GLN ALA ALA SER GLY GLU SEQRES 7 A 317 GLU LEU ALA VAL ALA VAL ALA GLU ARG VAL GLN GLU LYS SEQRES 8 A 317 ASP SER GLY PHE PHE LEU ARG PHE ILE ARG ALA ARG LYS SEQRES 9 A 317 PHE ASN VAL GLY ARG ALA TYR GLU LEU LEU ARG GLY TYR SEQRES 10 A 317 VAL ASN PHE ARG LEU GLN TYR PRO GLU LEU PHE ASP SER SEQRES 11 A 317 LEU SER PRO GLU ALA VAL ARG CYS THR ILE GLU ALA GLY SEQRES 12 A 317 TYR PRO GLY VAL LEU SER SER ARG ASP LYS TYR GLY ARG SEQRES 13 A 317 VAL VAL MET LEU PHE ASN ILE GLU ASN TRP GLN SER GLN SEQRES 14 A 317 GLU ILE THR PHE ASP GLU ILE LEU GLN ALA TYR CYS PHE SEQRES 15 A 317 ILE LEU GLU LYS LEU LEU GLU ASN GLU GLU THR GLN ILE SEQRES 16 A 317 ASN GLY PHE CYS ILE ILE GLU ASN PHE LYS GLY PHE THR SEQRES 17 A 317 MET GLN GLN ALA ALA SER LEU ARG THR SER ASP LEU ARG SEQRES 18 A 317 LYS MET VAL ASP MET LEU GLN ASP SER PHE PRO ALA TRP SEQRES 19 A 317 PHE LYS ALA ILE HIS PHE ILE HIS GLN PRO TRP TYR PHE SEQRES 20 A 317 THR THR THR TYR ASN VAL VAL LYS PRO PHE LEU LYS SER SEQRES 21 A 317 LYS LEU LEU GLU ARG VAL PHE VAL HIS GLY ASP ASP LEU SEQRES 22 A 317 SER GLY PHE TYR GLN GLU ILE ASP GLU ASN ILE LEU PRO SEQRES 23 A 317 SER ASP PHE GLY GLY THR LEU PRO LYS TYR ASP GLY LYS SEQRES 24 A 317 ALA VAL ALA GLU GLN LEU PHE GLY PRO GLN ALA GLN ALA SEQRES 25 A 317 GLU ASN THR ALA PHE HET RET A1307 21 HETNAM RET RETINAL FORMUL 2 RET C20 H28 O FORMUL 3 HOH *308(H2 O) HELIX 1 1 GLU A 57 ALA A 75 1 19 HELIX 2 2 GLU A 78 VAL A 88 1 11 HELIX 3 3 ASP A 92 ARG A 103 1 12 HELIX 4 4 ASN A 106 TYR A 124 1 19 HELIX 5 5 PRO A 125 PHE A 128 5 4 HELIX 6 6 SER A 132 ALA A 142 1 11 HELIX 7 7 THR A 172 LEU A 188 1 17 HELIX 8 8 GLU A 192 GLY A 197 1 6 HELIX 9 9 THR A 208 LEU A 215 1 8 HELIX 10 10 ARG A 216 ASP A 229 1 14 HELIX 11 11 TYR A 246 LYS A 255 1 10 HELIX 12 12 PRO A 256 LEU A 258 5 3 HELIX 13 13 LYS A 259 GLU A 264 1 6 HELIX 14 14 LEU A 273 ILE A 280 1 8 HELIX 15 15 ASP A 281 LEU A 285 5 5 HELIX 16 16 SER A 287 GLY A 290 5 4 HELIX 17 17 ASP A 297 PHE A 306 1 10 SHEET 1 AA 5 GLY A 146 VAL A 147 0 SHEET 2 AA 5 VAL A 157 ASN A 162 -1 O LEU A 160 N GLY A 146 SHEET 3 AA 5 PHE A 198 ASN A 203 1 O CYS A 199 N MET A 159 SHEET 4 AA 5 PHE A 235 ILE A 241 1 N LYS A 236 O PHE A 198 SHEET 5 AA 5 VAL A 266 VAL A 268 1 O PHE A 267 N PHE A 240 CISPEP 1 TYR A 144 PRO A 145 0 -13.50 SITE 1 AC1 8 PHE A 161 ILE A 163 TRP A 166 PHE A 173 SITE 2 AC1 8 ILE A 176 LEU A 220 THR A 250 HOH A2194 CRYST1 87.870 57.918 75.206 90.00 122.88 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011380 0.000000 0.007357 0.00000 SCALE2 0.000000 0.017266 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015833 0.00000