HEADER TRANSFERASE 19-DEC-13 4CJC TITLE ORTHORHOMBIC CRYSTAL FORM OF BOGT6A E192Q IN COMPLEX WITH UDP-GALNAC, TITLE 2 UDP, GALNAC COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSYLTRANSFERASE FAMILY 6; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: ACTIVE SITE, RESIDUES 1-246; COMPND 5 SYNONYM: GLYCOSYLTRANSFERASE; COMPND 6 EC: 2.4.1.40; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES OVATUS; SOURCE 3 ORGANISM_TAXID: 28116; SOURCE 4 ATCC: 8483; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET42B KEYWDS TRANSFERASE, ORTHORHOMBIC FORM, METAL-INDEPENDENT, HYDROLYSED KEYWDS 2 PRODUCTS EXPDTA X-RAY DIFFRACTION AUTHOR T.PHAM,B.STINSON,N.THIYAGARAJAN,M.LIZOTTE-WANIEWSKI,K.BREW, AUTHOR 2 K.R.ACHARYA REVDAT 4 20-DEC-23 4CJC 1 REMARK HETSYN REVDAT 3 29-JUL-20 4CJC 1 COMPND REMARK HETNAM SITE REVDAT 3 2 1 ATOM REVDAT 2 02-APR-14 4CJC 1 JRNL REVDAT 1 05-FEB-14 4CJC 0 JRNL AUTH T.T.K.PHAM,B.STINSON,N.THIYAGARAJAN,M.LIZOTTE-WANIEWSKI, JRNL AUTH 2 K.BREW,K.R.ACHARYA JRNL TITL STRUCTURES OF COMPLEXES OF A METAL-INDEPENDENT JRNL TITL 2 GLYCOSYLTRANSFERASE GT6 FROM BACTEROIDES OVATUS WITH JRNL TITL 3 UDP-GALNAC AND ITS HYDROLYSIS PRODUCTS. JRNL REF J.BIOL.CHEM. V. 289 8041 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24459149 JRNL DOI 10.1074/JBC.M113.545384 REMARK 2 REMARK 2 RESOLUTION. 3.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 88.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 17264 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.285 REMARK 3 R VALUE (WORKING SET) : 0.284 REMARK 3 FREE R VALUE : 0.314 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 876 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 88.8315 - 6.2142 0.99 2952 142 0.2534 0.2409 REMARK 3 2 6.2142 - 4.9325 0.99 2809 160 0.2663 0.3221 REMARK 3 3 4.9325 - 4.3090 1.00 2793 140 0.2510 0.2794 REMARK 3 4 4.3090 - 3.9151 0.99 2752 143 0.2990 0.3412 REMARK 3 5 3.9151 - 3.6344 0.85 2316 148 0.3867 0.4297 REMARK 3 6 3.6344 - 3.4201 1.00 2766 143 0.3730 0.4473 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.570 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 91.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 83.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 8388 REMARK 3 ANGLE : 1.206 11413 REMARK 3 CHIRALITY : 0.054 1170 REMARK 3 PLANARITY : 0.008 1439 REMARK 3 DIHEDRAL : 16.602 3107 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CJC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1290059267. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 289.15 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.920 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17402 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.420 REMARK 200 RESOLUTION RANGE LOW (A) : 88.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.09000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 4CJB REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LI2SO4, 0.1M BIS TRIS, PH 5.5, REMARK 280 20 % PEG 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.06000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.91500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 60.07500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.91500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.06000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 60.07500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 242 REMARK 465 ARG A 243 REMARK 465 ARG A 244 REMARK 465 LYS A 245 REMARK 465 ASN A 246 REMARK 465 HIS B 239 REMARK 465 GLU B 240 REMARK 465 LEU B 241 REMARK 465 LEU B 242 REMARK 465 ARG B 243 REMARK 465 ARG B 244 REMARK 465 LYS B 245 REMARK 465 ASN B 246 REMARK 465 LEU C 241 REMARK 465 LEU C 242 REMARK 465 ARG C 243 REMARK 465 ARG C 244 REMARK 465 LYS C 245 REMARK 465 ASN C 246 REMARK 465 GLY D 237 REMARK 465 GLY D 238 REMARK 465 HIS D 239 REMARK 465 GLU D 240 REMARK 465 LEU D 241 REMARK 465 LEU D 242 REMARK 465 ARG D 243 REMARK 465 ARG D 244 REMARK 465 LYS D 245 REMARK 465 ASN D 246 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 60 CG CD CE NZ REMARK 480 GLU A 85 CD OE1 OE2 REMARK 480 LYS B 60 CG CD CE NZ REMARK 480 ARG B 79 CZ NH1 NH2 REMARK 480 GLU B 85 CD OE1 OE2 REMARK 480 LYS C 60 CG CD CE NZ REMARK 480 ARG C 79 CZ NH1 NH2 REMARK 480 GLU C 85 CD OE1 OE2 REMARK 480 LYS D 60 CG CD CE NZ REMARK 480 ARG D 79 CZ NH1 NH2 REMARK 480 GLU D 85 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU D 50 NH2 ARG D 58 1.78 REMARK 500 OE2 GLU A 25 OH TYR A 38 1.88 REMARK 500 O MET C 29 CZ PHE C 34 1.92 REMARK 500 NE1 TRP A 17 O TYR A 48 1.93 REMARK 500 CD1 ILE A 3 CE MET A 29 1.95 REMARK 500 O LEU D 84 OG1 THR D 88 2.00 REMARK 500 OD1 ASN A 95 O3B UD2 A 1242 2.06 REMARK 500 O ILE C 8 O2' UD2 C 1241 2.10 REMARK 500 OE2 GLU A 37 ND1 HIS A 55 2.10 REMARK 500 O THR D 172 OG SER D 175 2.11 REMARK 500 N MET D 1 O SER D 33 2.11 REMARK 500 OD1 ASN B 95 O3' UDP B 1239 2.12 REMARK 500 OE1 GLN C 192 O3' UD2 C 1241 2.12 REMARK 500 O ILE C 188 OG SER C 193 2.12 REMARK 500 O LEU A 84 OG1 THR A 88 2.13 REMARK 500 O LYS C 168 OG1 THR C 172 2.13 REMARK 500 O LEU C 84 OG1 THR C 88 2.14 REMARK 500 NZ LYS A 231 O3A UD2 A 1242 2.15 REMARK 500 OD1 ASP C 31 OG SER C 33 2.15 REMARK 500 O ARG A 179 ND2 ASN A 183 2.15 REMARK 500 O LEU B 84 OG1 THR B 88 2.15 REMARK 500 OG1 THR B 10 O4 UDP B 1239 2.15 REMARK 500 NE2 GLN A 192 O7' UD2 A 1242 2.18 REMARK 500 ND2 ASN C 130 O GLU C 149 2.18 REMARK 500 CG MET D 29 CE2 PHE D 34 2.18 REMARK 500 OE2 GLU D 50 NH1 ARG D 58 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 49 N - CA - C ANGL. DEV. = -22.2 DEGREES REMARK 500 GLY A 237 N - CA - C ANGL. DEV. = -15.9 DEGREES REMARK 500 SER B 33 CB - CA - C ANGL. DEV. = -11.5 DEGREES REMARK 500 LEU B 47 CA - CB - CG ANGL. DEV. = -16.6 DEGREES REMARK 500 PRO C 45 C - N - CD ANGL. DEV. = -16.0 DEGREES REMARK 500 LEU D 169 CA - CB - CG ANGL. DEV. = 15.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 51 -60.06 67.16 REMARK 500 LYS A 72 35.28 -95.21 REMARK 500 THR A 101 -32.24 -135.89 REMARK 500 THR A 134 65.59 -101.96 REMARK 500 TYR A 135 -165.77 -76.28 REMARK 500 PRO A 146 -159.97 -79.58 REMARK 500 PRO A 210 3.27 -65.75 REMARK 500 PRO A 221 44.10 -75.29 REMARK 500 ILE A 225 -54.18 -129.76 REMARK 500 LYS B 18 -72.80 -58.85 REMARK 500 LYS B 72 37.19 -97.26 REMARK 500 THR B 101 -32.37 -135.69 REMARK 500 THR B 134 63.54 -104.07 REMARK 500 TYR B 135 -166.12 -77.72 REMARK 500 PRO B 146 -159.33 -77.64 REMARK 500 TRP B 189 66.04 39.39 REMARK 500 PRO B 210 5.26 -67.76 REMARK 500 PRO B 221 45.56 -72.66 REMARK 500 ILE B 225 -50.04 -128.60 REMARK 500 LYS C 18 -71.02 -58.40 REMARK 500 ASP C 49 9.96 80.71 REMARK 500 LYS C 72 30.22 -94.76 REMARK 500 THR C 101 -34.99 -134.07 REMARK 500 ILE C 104 -75.38 -119.85 REMARK 500 THR C 134 64.24 -101.93 REMARK 500 TYR C 135 -166.50 -77.72 REMARK 500 PRO C 146 -159.97 -81.69 REMARK 500 PRO C 210 2.19 -66.21 REMARK 500 PRO C 221 44.95 -75.17 REMARK 500 ILE C 225 -52.05 -131.44 REMARK 500 LYS D 18 -72.96 -57.68 REMARK 500 TYR D 27 -61.28 -109.11 REMARK 500 ASP D 31 150.58 -49.58 REMARK 500 ASP D 49 4.47 80.73 REMARK 500 LYS D 72 35.78 -94.12 REMARK 500 THR D 101 -35.57 -134.45 REMARK 500 SER D 114 -158.34 -93.79 REMARK 500 THR D 134 66.10 -102.88 REMARK 500 TYR D 135 -163.71 -76.39 REMARK 500 PRO D 146 -160.03 -74.10 REMARK 500 TRP D 189 65.70 -103.03 REMARK 500 PRO D 210 2.70 -68.03 REMARK 500 PRO D 221 43.09 -72.89 REMARK 500 ILE D 225 -52.42 -131.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CJ8 RELATED DB: PDB REMARK 900 MONOCLINIC CRYSTAL FORM OF BOGT6A E192Q IN COMPLEX WITH UDP-GALNAC, REMARK 900 UDP AND GALNAC REMARK 900 RELATED ID: 4CJB RELATED DB: PDB REMARK 900 ORTHORHOMBIC CRYSTAL FORM OF BOGT6A E192Q IN COMPLEX WITH GALNAC REMARK 999 REMARK 999 SEQUENCE REMARK 999 WITH HIS-TAG DBREF 4CJC A 1 246 UNP A7LVT2 A7LVT2_BACOV 1 246 DBREF 4CJC B 1 246 UNP A7LVT2 A7LVT2_BACOV 1 246 DBREF 4CJC C 1 246 UNP A7LVT2 A7LVT2_BACOV 1 246 DBREF 4CJC D 1 246 UNP A7LVT2 A7LVT2_BACOV 1 246 SEQADV 4CJC GLN A 192 UNP A7LVT2 GLU 192 ENGINEERED MUTATION SEQADV 4CJC GLN B 192 UNP A7LVT2 GLU 192 ENGINEERED MUTATION SEQADV 4CJC GLN C 192 UNP A7LVT2 GLU 192 ENGINEERED MUTATION SEQADV 4CJC GLN D 192 UNP A7LVT2 GLU 192 ENGINEERED MUTATION SEQRES 1 A 246 MET ARG ILE GLY ILE LEU TYR ILE CYS THR GLY LYS TYR SEQRES 2 A 246 ASP ILE PHE TRP LYS ASP PHE TYR LEU SER ALA GLU ARG SEQRES 3 A 246 TYR PHE MET GLN ASP GLN SER PHE ILE ILE GLU TYR TYR SEQRES 4 A 246 VAL PHE THR ASP SER PRO LYS LEU TYR ASP GLU GLU ASN SEQRES 5 A 246 ASN LYS HIS ILE HIS ARG ILE LYS GLN LYS ASN LEU GLY SEQRES 6 A 246 TRP PRO ASP ASN THR LEU LYS ARG PHE HIS ILE PHE LEU SEQRES 7 A 246 ARG ILE LYS GLU GLN LEU GLU ARG GLU THR ASP TYR LEU SEQRES 8 A 246 PHE PHE PHE ASN ALA ASN LEU LEU PHE THR SER PRO ILE SEQRES 9 A 246 GLY LYS GLU ILE LEU PRO PRO SER ASP SER ASN GLY LEU SEQRES 10 A 246 LEU GLY THR MET HIS PRO GLY PHE TYR ASN LYS PRO ASN SEQRES 11 A 246 SER GLU PHE THR TYR GLU ARG ARG ASP ALA SER THR ALA SEQRES 12 A 246 TYR ILE PRO GLU GLY GLU GLY ARG TYR TYR TYR ALA GLY SEQRES 13 A 246 GLY LEU SER GLY GLY CYS THR LYS ALA TYR LEU LYS LEU SEQRES 14 A 246 CYS THR THR ILE CYS SER TRP VAL ASP ARG ASP ALA THR SEQRES 15 A 246 ASN HIS ILE ILE PRO ILE TRP HIS ASP GLN SER LEU ILE SEQRES 16 A 246 ASN LYS TYR PHE LEU ASP ASN PRO PRO ALA ILE THR LEU SEQRES 17 A 246 SER PRO ALA TYR LEU TYR PRO GLU GLY TRP LEU LEU PRO SEQRES 18 A 246 PHE GLU PRO ILE ILE LEU ILE ARG ASP LYS ASN LYS PRO SEQRES 19 A 246 GLN TYR GLY GLY HIS GLU LEU LEU ARG ARG LYS ASN SEQRES 1 B 246 MET ARG ILE GLY ILE LEU TYR ILE CYS THR GLY LYS TYR SEQRES 2 B 246 ASP ILE PHE TRP LYS ASP PHE TYR LEU SER ALA GLU ARG SEQRES 3 B 246 TYR PHE MET GLN ASP GLN SER PHE ILE ILE GLU TYR TYR SEQRES 4 B 246 VAL PHE THR ASP SER PRO LYS LEU TYR ASP GLU GLU ASN SEQRES 5 B 246 ASN LYS HIS ILE HIS ARG ILE LYS GLN LYS ASN LEU GLY SEQRES 6 B 246 TRP PRO ASP ASN THR LEU LYS ARG PHE HIS ILE PHE LEU SEQRES 7 B 246 ARG ILE LYS GLU GLN LEU GLU ARG GLU THR ASP TYR LEU SEQRES 8 B 246 PHE PHE PHE ASN ALA ASN LEU LEU PHE THR SER PRO ILE SEQRES 9 B 246 GLY LYS GLU ILE LEU PRO PRO SER ASP SER ASN GLY LEU SEQRES 10 B 246 LEU GLY THR MET HIS PRO GLY PHE TYR ASN LYS PRO ASN SEQRES 11 B 246 SER GLU PHE THR TYR GLU ARG ARG ASP ALA SER THR ALA SEQRES 12 B 246 TYR ILE PRO GLU GLY GLU GLY ARG TYR TYR TYR ALA GLY SEQRES 13 B 246 GLY LEU SER GLY GLY CYS THR LYS ALA TYR LEU LYS LEU SEQRES 14 B 246 CYS THR THR ILE CYS SER TRP VAL ASP ARG ASP ALA THR SEQRES 15 B 246 ASN HIS ILE ILE PRO ILE TRP HIS ASP GLN SER LEU ILE SEQRES 16 B 246 ASN LYS TYR PHE LEU ASP ASN PRO PRO ALA ILE THR LEU SEQRES 17 B 246 SER PRO ALA TYR LEU TYR PRO GLU GLY TRP LEU LEU PRO SEQRES 18 B 246 PHE GLU PRO ILE ILE LEU ILE ARG ASP LYS ASN LYS PRO SEQRES 19 B 246 GLN TYR GLY GLY HIS GLU LEU LEU ARG ARG LYS ASN SEQRES 1 C 246 MET ARG ILE GLY ILE LEU TYR ILE CYS THR GLY LYS TYR SEQRES 2 C 246 ASP ILE PHE TRP LYS ASP PHE TYR LEU SER ALA GLU ARG SEQRES 3 C 246 TYR PHE MET GLN ASP GLN SER PHE ILE ILE GLU TYR TYR SEQRES 4 C 246 VAL PHE THR ASP SER PRO LYS LEU TYR ASP GLU GLU ASN SEQRES 5 C 246 ASN LYS HIS ILE HIS ARG ILE LYS GLN LYS ASN LEU GLY SEQRES 6 C 246 TRP PRO ASP ASN THR LEU LYS ARG PHE HIS ILE PHE LEU SEQRES 7 C 246 ARG ILE LYS GLU GLN LEU GLU ARG GLU THR ASP TYR LEU SEQRES 8 C 246 PHE PHE PHE ASN ALA ASN LEU LEU PHE THR SER PRO ILE SEQRES 9 C 246 GLY LYS GLU ILE LEU PRO PRO SER ASP SER ASN GLY LEU SEQRES 10 C 246 LEU GLY THR MET HIS PRO GLY PHE TYR ASN LYS PRO ASN SEQRES 11 C 246 SER GLU PHE THR TYR GLU ARG ARG ASP ALA SER THR ALA SEQRES 12 C 246 TYR ILE PRO GLU GLY GLU GLY ARG TYR TYR TYR ALA GLY SEQRES 13 C 246 GLY LEU SER GLY GLY CYS THR LYS ALA TYR LEU LYS LEU SEQRES 14 C 246 CYS THR THR ILE CYS SER TRP VAL ASP ARG ASP ALA THR SEQRES 15 C 246 ASN HIS ILE ILE PRO ILE TRP HIS ASP GLN SER LEU ILE SEQRES 16 C 246 ASN LYS TYR PHE LEU ASP ASN PRO PRO ALA ILE THR LEU SEQRES 17 C 246 SER PRO ALA TYR LEU TYR PRO GLU GLY TRP LEU LEU PRO SEQRES 18 C 246 PHE GLU PRO ILE ILE LEU ILE ARG ASP LYS ASN LYS PRO SEQRES 19 C 246 GLN TYR GLY GLY HIS GLU LEU LEU ARG ARG LYS ASN SEQRES 1 D 246 MET ARG ILE GLY ILE LEU TYR ILE CYS THR GLY LYS TYR SEQRES 2 D 246 ASP ILE PHE TRP LYS ASP PHE TYR LEU SER ALA GLU ARG SEQRES 3 D 246 TYR PHE MET GLN ASP GLN SER PHE ILE ILE GLU TYR TYR SEQRES 4 D 246 VAL PHE THR ASP SER PRO LYS LEU TYR ASP GLU GLU ASN SEQRES 5 D 246 ASN LYS HIS ILE HIS ARG ILE LYS GLN LYS ASN LEU GLY SEQRES 6 D 246 TRP PRO ASP ASN THR LEU LYS ARG PHE HIS ILE PHE LEU SEQRES 7 D 246 ARG ILE LYS GLU GLN LEU GLU ARG GLU THR ASP TYR LEU SEQRES 8 D 246 PHE PHE PHE ASN ALA ASN LEU LEU PHE THR SER PRO ILE SEQRES 9 D 246 GLY LYS GLU ILE LEU PRO PRO SER ASP SER ASN GLY LEU SEQRES 10 D 246 LEU GLY THR MET HIS PRO GLY PHE TYR ASN LYS PRO ASN SEQRES 11 D 246 SER GLU PHE THR TYR GLU ARG ARG ASP ALA SER THR ALA SEQRES 12 D 246 TYR ILE PRO GLU GLY GLU GLY ARG TYR TYR TYR ALA GLY SEQRES 13 D 246 GLY LEU SER GLY GLY CYS THR LYS ALA TYR LEU LYS LEU SEQRES 14 D 246 CYS THR THR ILE CYS SER TRP VAL ASP ARG ASP ALA THR SEQRES 15 D 246 ASN HIS ILE ILE PRO ILE TRP HIS ASP GLN SER LEU ILE SEQRES 16 D 246 ASN LYS TYR PHE LEU ASP ASN PRO PRO ALA ILE THR LEU SEQRES 17 D 246 SER PRO ALA TYR LEU TYR PRO GLU GLY TRP LEU LEU PRO SEQRES 18 D 246 PHE GLU PRO ILE ILE LEU ILE ARG ASP LYS ASN LYS PRO SEQRES 19 D 246 GLN TYR GLY GLY HIS GLU LEU LEU ARG ARG LYS ASN HET UD2 A1242 39 HET UDP B1239 25 HET A2G B1240 15 HET UD2 C1241 39 HET UDP D1237 25 HET A2G D1238 15 HETNAM UD2 URIDINE-DIPHOSPHATE-N-ACETYLGALACTOSAMINE HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM A2G 2-ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOPYRANOSE HETSYN UD2 (2R,3R,4R,5R,6R)-3-(ACETYLAMINO)-4,5-DIHYDROXY-6- HETSYN 2 UD2 (HYDROXYMETHYL)TETRAHYDRO-2H-PYRAN-2-YL [(2R,3S,4R, HETSYN 3 UD2 5R)-5-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)-3,4- HETSYN 4 UD2 DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN HETSYN 5 UD2 DIPHOSPHATE HETSYN A2G N-ACETYL-ALPHA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 A2G ALPHA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 A2G ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-2-DEOXY-2-AMINO- HETSYN 4 A2G GALACTOSE FORMUL 5 UD2 2(C17 H27 N3 O17 P2) FORMUL 6 UDP 2(C9 H14 N2 O12 P2) FORMUL 7 A2G 2(C8 H15 N O6) HELIX 1 1 LYS A 12 ILE A 15 5 4 HELIX 2 2 PHE A 16 PHE A 28 1 13 HELIX 3 3 PRO A 67 LYS A 72 1 6 HELIX 4 4 LYS A 72 ARG A 79 1 8 HELIX 5 5 GLU A 82 GLU A 87 1 6 HELIX 6 6 GLY A 105 LEU A 109 5 5 HELIX 7 7 PRO A 129 PHE A 133 5 5 HELIX 8 8 THR A 163 ASN A 183 1 21 HELIX 9 9 TRP A 189 ASN A 202 1 14 HELIX 10 10 SER A 209 LEU A 213 5 5 HELIX 11 11 LYS B 12 ASP B 14 5 3 HELIX 12 12 ILE B 15 PHE B 28 1 14 HELIX 13 13 PRO B 67 LYS B 72 1 6 HELIX 14 14 LYS B 72 PHE B 77 1 6 HELIX 15 15 GLU B 82 GLU B 87 1 6 HELIX 16 16 GLY B 105 LEU B 109 5 5 HELIX 17 17 PRO B 129 PHE B 133 5 5 HELIX 18 18 THR B 163 ASN B 183 1 21 HELIX 19 19 TRP B 189 ASN B 202 1 14 HELIX 20 20 SER B 209 LEU B 213 5 5 HELIX 21 21 LYS C 12 ILE C 15 5 4 HELIX 22 22 PHE C 16 PHE C 28 1 13 HELIX 23 23 PRO C 67 LYS C 72 1 6 HELIX 24 24 LYS C 72 ARG C 79 1 8 HELIX 25 25 GLU C 82 THR C 88 1 7 HELIX 26 26 GLY C 105 LEU C 109 5 5 HELIX 27 27 PRO C 129 PHE C 133 5 5 HELIX 28 28 THR C 163 ASN C 183 1 21 HELIX 29 29 TRP C 189 ASN C 202 1 14 HELIX 30 30 SER C 209 LEU C 213 5 5 HELIX 31 31 LYS D 12 ILE D 15 5 4 HELIX 32 32 PHE D 16 TYR D 27 1 12 HELIX 33 33 PRO D 67 LYS D 72 1 6 HELIX 34 34 LYS D 72 PHE D 77 1 6 HELIX 35 35 ILE D 80 ARG D 86 5 7 HELIX 36 36 GLY D 105 LEU D 109 5 5 HELIX 37 37 PRO D 129 PHE D 133 5 5 HELIX 38 38 THR D 163 ASN D 183 1 21 HELIX 39 39 TRP D 189 ASN D 202 1 14 HELIX 40 40 SER D 209 LEU D 213 5 5 SHEET 1 AA 7 HIS A 57 LYS A 60 0 SHEET 2 AA 7 ILE A 35 THR A 42 1 O TYR A 38 N HIS A 57 SHEET 3 AA 7 ARG A 2 ILE A 8 1 O ILE A 3 N GLU A 37 SHEET 4 AA 7 TYR A 90 PHE A 94 1 O TYR A 90 N GLY A 4 SHEET 5 AA 7 LEU A 158 CYS A 162 -1 O SER A 159 N PHE A 93 SHEET 6 AA 7 LEU A 117 THR A 120 -1 O LEU A 118 N GLY A 160 SHEET 7 AA 7 ILE A 206 LEU A 208 1 O ILE A 206 N GLY A 119 SHEET 1 AB 3 LEU A 98 PHE A 100 0 SHEET 2 AB 3 ILE A 226 ILE A 228 -1 O LEU A 227 N LEU A 99 SHEET 3 AB 3 TYR A 214 PRO A 215 1 O TYR A 214 N ILE A 228 SHEET 1 BA 7 ILE B 56 LYS B 60 0 SHEET 2 BA 7 ILE B 35 THR B 42 1 O TYR B 38 N HIS B 57 SHEET 3 BA 7 ARG B 2 ILE B 8 1 O ILE B 3 N GLU B 37 SHEET 4 BA 7 TYR B 90 PHE B 94 1 O TYR B 90 N GLY B 4 SHEET 5 BA 7 TYR B 154 CYS B 162 -1 O SER B 159 N PHE B 93 SHEET 6 BA 7 LEU B 117 MET B 121 -1 O LEU B 118 N GLY B 160 SHEET 7 BA 7 ILE B 206 LEU B 208 1 O ILE B 206 N GLY B 119 SHEET 1 BB 3 LEU B 98 PHE B 100 0 SHEET 2 BB 3 ILE B 226 ILE B 228 -1 O LEU B 227 N LEU B 99 SHEET 3 BB 3 TYR B 214 PRO B 215 1 O TYR B 214 N ILE B 228 SHEET 1 CA 7 HIS C 57 LYS C 60 0 SHEET 2 CA 7 ILE C 35 THR C 42 1 O TYR C 38 N HIS C 57 SHEET 3 CA 7 ARG C 2 CYS C 9 1 O ILE C 3 N GLU C 37 SHEET 4 CA 7 TYR C 90 PHE C 94 1 O TYR C 90 N GLY C 4 SHEET 5 CA 7 TYR C 154 CYS C 162 -1 O SER C 159 N PHE C 93 SHEET 6 CA 7 LEU C 117 MET C 121 -1 O LEU C 118 N GLY C 160 SHEET 7 CA 7 ILE C 206 LEU C 208 1 O ILE C 206 N GLY C 119 SHEET 1 CB 3 LEU C 98 PHE C 100 0 SHEET 2 CB 3 ILE C 226 ILE C 228 -1 O LEU C 227 N LEU C 99 SHEET 3 CB 3 TYR C 214 PRO C 215 1 O TYR C 214 N ILE C 228 SHEET 1 DA 5 ILE D 35 THR D 42 0 SHEET 2 DA 5 ARG D 2 CYS D 9 1 O ILE D 3 N GLU D 37 SHEET 3 DA 5 TYR D 90 PHE D 94 1 O TYR D 90 N GLY D 4 SHEET 4 DA 5 LEU D 158 CYS D 162 -1 O SER D 159 N PHE D 93 SHEET 5 DA 5 LEU D 117 LEU D 118 -1 O LEU D 118 N GLY D 160 SHEET 1 DB 3 LEU D 98 PHE D 100 0 SHEET 2 DB 3 ILE D 226 ILE D 228 -1 O LEU D 227 N LEU D 99 SHEET 3 DB 3 TYR D 214 PRO D 215 1 O TYR D 214 N ILE D 228 CISPEP 1 TYR A 48 ASP A 49 0 -16.38 CISPEP 2 TRP A 66 PRO A 67 0 -4.15 CISPEP 3 TRP B 66 PRO B 67 0 -3.32 CISPEP 4 TRP C 66 PRO C 67 0 -2.60 CISPEP 5 TRP D 66 PRO D 67 0 -1.31 CRYST1 80.120 120.150 131.830 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012481 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008323 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007586 0.00000