HEADER TRANSFERASE 06-JAN-14 4CKI TITLE CRYSTAL STRUCTURE OF ONCOGENIC RET TYROSINE KINASE M918T BOUND TO TITLE 2 ADENOSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTO-ONCOGENE TYROSINE-PROTEIN KINASE RECEPTOR RET; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 705-1013; COMPND 5 SYNONYM: CADHERIN FAMILY MEMBER 12, PROTO-ONCOGENE C-RET; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR I.PLAZA-MENACHO,K.BARNOUIN,K.GOODMAN,R.J.MARTINEZ-TORRES,A.BORG, AUTHOR 2 J.MURRAY-RUST,S.MOUILLERON,P.KNOWLES,N.Q.MCDONALD REVDAT 4 20-DEC-23 4CKI 1 REMARK LINK REVDAT 3 28-FEB-18 4CKI 1 JRNL REVDAT 2 19-MAR-14 4CKI 1 TITLE AUTHOR JRNL REVDAT 1 05-MAR-14 4CKI 0 JRNL AUTH I.PLAZA-MENACHO,K.BARNOUIN,K.GOODMAN,R.J.MARTINEZ-TORRES, JRNL AUTH 2 A.BORG,J.MURRAY-RUST,S.MOUILLERON,P.KNOWLES,N.Q.MCDONALD JRNL TITL ONCOGENIC RET KINASE DOMAIN MUTATIONS PERTURB THE JRNL TITL 2 AUTOPHOSPHORYLATION TRAJECTORY BY ENHANCING SUBSTRATE JRNL TITL 3 PRESENTATION IN TRANS. JRNL REF MOL. CELL V. 53 738 2014 JRNL REFN ISSN 1097-4164 JRNL PMID 24560924 JRNL DOI 10.1016/J.MOLCEL.2014.01.015 REMARK 2 REMARK 2 RESOLUTION. 2.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.730 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 22078 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1107 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.5654 - 4.2312 1.00 2697 139 0.1433 0.1568 REMARK 3 2 4.2312 - 3.3590 1.00 2648 132 0.1316 0.1586 REMARK 3 3 3.3590 - 2.9346 1.00 2641 126 0.1673 0.2072 REMARK 3 4 2.9346 - 2.6663 1.00 2644 133 0.1742 0.2212 REMARK 3 5 2.6663 - 2.4753 1.00 2628 142 0.1723 0.2170 REMARK 3 6 2.4753 - 2.3293 1.00 2590 170 0.1656 0.2113 REMARK 3 7 2.3293 - 2.2127 1.00 2636 134 0.1696 0.2237 REMARK 3 8 2.2127 - 2.1164 0.96 2487 131 0.1907 0.2541 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2558 REMARK 3 ANGLE : 0.901 3473 REMARK 3 CHIRALITY : 0.062 382 REMARK 3 PLANARITY : 0.004 436 REMARK 3 DIHEDRAL : 13.215 990 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 700 THROUGH 735 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.7698 -1.2907 0.7197 REMARK 3 T TENSOR REMARK 3 T11: 0.1762 T22: 0.2523 REMARK 3 T33: 0.3161 T12: -0.0111 REMARK 3 T13: -0.0219 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 1.4576 L22: 4.2868 REMARK 3 L33: 0.7837 L12: -2.5064 REMARK 3 L13: -0.9521 L23: 1.6026 REMARK 3 S TENSOR REMARK 3 S11: -0.0174 S12: 0.1334 S13: -0.3244 REMARK 3 S21: -0.0391 S22: -0.1279 S23: 0.4674 REMARK 3 S31: 0.0265 S32: -0.2617 S33: 0.1092 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 736 THROUGH 781 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.5835 1.9391 4.8392 REMARK 3 T TENSOR REMARK 3 T11: 0.0991 T22: 0.1466 REMARK 3 T33: 0.1970 T12: -0.0062 REMARK 3 T13: -0.0186 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 2.3162 L22: 5.3629 REMARK 3 L33: 0.4290 L12: -3.3762 REMARK 3 L13: -0.4941 L23: 0.8614 REMARK 3 S TENSOR REMARK 3 S11: -0.1102 S12: 0.0078 S13: -0.0147 REMARK 3 S21: 0.1089 S22: 0.1617 S23: 0.1355 REMARK 3 S31: -0.0130 S32: -0.0438 S33: -0.0725 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 782 THROUGH 890 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.8253 3.5519 18.7682 REMARK 3 T TENSOR REMARK 3 T11: 0.1965 T22: 0.1787 REMARK 3 T33: 0.1611 T12: 0.0601 REMARK 3 T13: 0.0157 T23: -0.0316 REMARK 3 L TENSOR REMARK 3 L11: 2.4750 L22: 1.6865 REMARK 3 L33: 3.3061 L12: -0.2741 REMARK 3 L13: 0.3780 L23: 0.0500 REMARK 3 S TENSOR REMARK 3 S11: -0.1939 S12: -0.3778 S13: 0.1904 REMARK 3 S21: 0.2087 S22: 0.0446 S23: 0.0749 REMARK 3 S31: -0.3638 S32: -0.0852 S33: 0.1351 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 891 THROUGH 1013 ) REMARK 3 ORIGIN FOR THE GROUP (A): 75.4996 -6.0686 20.8974 REMARK 3 T TENSOR REMARK 3 T11: 0.1676 T22: 0.2342 REMARK 3 T33: 0.1575 T12: 0.0162 REMARK 3 T13: -0.0119 T23: 0.0588 REMARK 3 L TENSOR REMARK 3 L11: 1.7432 L22: 1.9644 REMARK 3 L33: 3.3221 L12: -0.3243 REMARK 3 L13: -0.4783 L23: 0.9333 REMARK 3 S TENSOR REMARK 3 S11: -0.0773 S12: -0.3757 S13: -0.1099 REMARK 3 S21: 0.2457 S22: 0.0363 S23: -0.0751 REMARK 3 S31: 0.0358 S32: 0.3084 S33: 0.0072 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CKI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1290059253. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM16 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97945 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22084 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.110 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.11 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.18000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2IVT REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M NA FORMATE, 0.1M NA CITRATE, PH 5.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 35.94650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.28450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 35.94650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.28450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 143.78600 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 823 REMARK 465 PRO A 824 REMARK 465 GLY A 825 REMARK 465 TYR A 826 REMARK 465 LEU A 827 REMARK 465 GLY A 828 REMARK 465 SER A 829 REMARK 465 GLY A 830 REMARK 465 GLY A 831 REMARK 465 SER A 832 REMARK 465 ARG A 833 REMARK 465 ASN A 834 REMARK 465 SER A 835 REMARK 465 SER A 836 REMARK 465 SER A 837 REMARK 465 LEU A 838 REMARK 465 ASP A 839 REMARK 465 HIS A 840 REMARK 465 PRO A 841 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 710 CG CD CE NZ REMARK 470 GLU A 713 CG CD OE1 OE2 REMARK 470 ASP A 714 CG OD1 OD2 REMARK 470 GLU A 762 CG CD OE1 OE2 REMARK 470 LYS A 789 CE NZ REMARK 470 ASP A 797 CG OD1 OD2 REMARK 470 VAL A 822 CG1 CG2 REMARK 470 ASP A 842 CG OD1 OD2 REMARK 470 GLU A 843 CG CD OE1 OE2 REMARK 470 GLU A 884 CD OE1 OE2 REMARK 470 GLU A 901 CG CD OE1 OE2 REMARK 470 ARG A 959 CD NE CZ NH1 NH2 REMARK 470 GLU A 979 CG CD OE1 OE2 REMARK 470 LYS A 994 CD CE NZ REMARK 470 ARG A1013 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 3017 O HOH A 3068 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 712 CA - CB - CG ANGL. DEV. = 17.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 873 -20.59 75.52 REMARK 500 ASP A 892 75.33 59.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 2014 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 2015 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 2016 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 2017 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 2018 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 2019 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 2020 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 2021 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADN A 2022 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CKJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RET TYROSINE KINASE DOMAIN BOUND TO ADENOSINE REMARK 999 REMARK 999 SEQUENCE REMARK 999 N TERMINAL RESIDUES GPLSL ARE VECTOR DERIVES RESIDUES. DBREF 4CKI A 705 1013 UNP P07949 RET_HUMAN 705 1013 SEQADV 4CKI GLY A 700 UNP P07949 EXPRESSION TAG SEQADV 4CKI PRO A 701 UNP P07949 EXPRESSION TAG SEQADV 4CKI LEU A 702 UNP P07949 EXPRESSION TAG SEQADV 4CKI SER A 703 UNP P07949 EXPRESSION TAG SEQADV 4CKI LEU A 704 UNP P07949 EXPRESSION TAG SEQADV 4CKI THR A 918 UNP P07949 MET 918 ENGINEERED MUTATION SEQRES 1 A 314 GLY PRO LEU SER LEU SER VAL ASP ALA PHE LYS ILE LEU SEQRES 2 A 314 GLU ASP PRO LYS TRP GLU PHE PRO ARG LYS ASN LEU VAL SEQRES 3 A 314 LEU GLY LYS THR LEU GLY GLU GLY GLU PHE GLY LYS VAL SEQRES 4 A 314 VAL LYS ALA THR ALA PHE HIS LEU LYS GLY ARG ALA GLY SEQRES 5 A 314 TYR THR THR VAL ALA VAL LYS MET LEU LYS GLU ASN ALA SEQRES 6 A 314 SER PRO SER GLU LEU ARG ASP LEU LEU SER GLU PHE ASN SEQRES 7 A 314 VAL LEU LYS GLN VAL ASN HIS PRO HIS VAL ILE LYS LEU SEQRES 8 A 314 TYR GLY ALA CYS SER GLN ASP GLY PRO LEU LEU LEU ILE SEQRES 9 A 314 VAL GLU TYR ALA LYS TYR GLY SER LEU ARG GLY PHE LEU SEQRES 10 A 314 ARG GLU SER ARG LYS VAL GLY PRO GLY TYR LEU GLY SER SEQRES 11 A 314 GLY GLY SER ARG ASN SER SER SER LEU ASP HIS PRO ASP SEQRES 12 A 314 GLU ARG ALA LEU THR MET GLY ASP LEU ILE SER PHE ALA SEQRES 13 A 314 TRP GLN ILE SER GLN GLY MET GLN TYR LEU ALA GLU MET SEQRES 14 A 314 LYS LEU VAL HIS ARG ASP LEU ALA ALA ARG ASN ILE LEU SEQRES 15 A 314 VAL ALA GLU GLY ARG LYS MET LYS ILE SER ASP PHE GLY SEQRES 16 A 314 LEU SER ARG ASP VAL PTR GLU GLU ASP SER PTR VAL LYS SEQRES 17 A 314 ARG SER GLN GLY ARG ILE PRO VAL LYS TRP THR ALA ILE SEQRES 18 A 314 GLU SER LEU PHE ASP HIS ILE TYR THR THR GLN SER ASP SEQRES 19 A 314 VAL TRP SER PHE GLY VAL LEU LEU TRP GLU ILE VAL THR SEQRES 20 A 314 LEU GLY GLY ASN PRO TYR PRO GLY ILE PRO PRO GLU ARG SEQRES 21 A 314 LEU PHE ASN LEU LEU LYS THR GLY HIS ARG MET GLU ARG SEQRES 22 A 314 PRO ASP ASN CYS SER GLU GLU MET TYR ARG LEU MET LEU SEQRES 23 A 314 GLN CYS TRP LYS GLN GLU PRO ASP LYS ARG PRO VAL PHE SEQRES 24 A 314 ALA ASP ILE SER LYS ASP LEU GLU LYS MET MET VAL LYS SEQRES 25 A 314 ARG ARG MODRES 4CKI PTR A 900 TYR O-PHOSPHOTYROSINE MODRES 4CKI PTR A 905 TYR O-PHOSPHOTYROSINE HET PTR A 900 16 HET PTR A 905 16 HET FMT A2014 3 HET FMT A2015 3 HET FMT A2016 3 HET FMT A2017 3 HET FMT A2018 3 HET FMT A2019 3 HET FMT A2020 3 HET FMT A2021 3 HET ADN A2022 19 HETNAM PTR O-PHOSPHOTYROSINE HETNAM FMT FORMIC ACID HETNAM ADN ADENOSINE HETSYN PTR PHOSPHONOTYROSINE FORMUL 1 PTR 2(C9 H12 N O6 P) FORMUL 2 FMT 8(C H2 O2) FORMUL 10 ADN C10 H13 N5 O4 FORMUL 11 HOH *218(H2 O) HELIX 1 1 GLY A 700 LYS A 710 1 11 HELIX 2 2 PRO A 720 LYS A 722 5 3 HELIX 3 3 SER A 765 LYS A 780 1 16 HELIX 4 4 SER A 811 GLU A 818 1 8 HELIX 5 5 THR A 847 MET A 868 1 22 HELIX 6 6 ALA A 876 ARG A 878 5 3 HELIX 7 7 PRO A 914 THR A 918 5 5 HELIX 8 8 ALA A 919 HIS A 926 1 8 HELIX 9 9 THR A 929 THR A 946 1 18 HELIX 10 10 PRO A 956 GLU A 958 5 3 HELIX 11 11 ARG A 959 THR A 966 1 8 HELIX 12 12 SER A 977 TRP A 988 1 12 HELIX 13 13 GLU A 991 ARG A 995 5 5 HELIX 14 14 VAL A 997 ARG A 1012 1 16 SHEET 1 AA 5 LEU A 724 GLU A 732 0 SHEET 2 AA 5 GLY A 736 LEU A 746 -1 O VAL A 738 N LEU A 730 SHEET 3 AA 5 ARG A 749 LEU A 760 -1 O ARG A 749 N LEU A 746 SHEET 4 AA 5 LEU A 801 GLU A 805 -1 O LEU A 802 N LYS A 758 SHEET 5 AA 5 LEU A 790 CYS A 794 -1 N TYR A 791 O ILE A 803 SHEET 1 AB 2 SER A 819 LYS A 821 0 SHEET 2 AB 2 ARG A 844 LEU A 846 1 O ARG A 844 N ARG A 820 SHEET 1 AC 2 LEU A 870 VAL A 871 0 SHEET 2 AC 2 ARG A 897 ASP A 898 -1 O ARG A 897 N VAL A 871 SHEET 1 AD 2 ILE A 880 ALA A 883 0 SHEET 2 AD 2 LYS A 887 ILE A 890 -1 O LYS A 887 N ALA A 883 SHEET 1 AE 2 PTR A 905 VAL A 906 0 SHEET 2 AE 2 ILE A 927 TYR A 928 -1 O TYR A 928 N PTR A 905 LINK C VAL A 899 N PTR A 900 1555 1555 1.33 LINK C PTR A 900 N GLU A 901 1555 1555 1.33 LINK C SER A 904 N PTR A 905 1555 1555 1.33 LINK C PTR A 905 N VAL A 906 1555 1555 1.33 SITE 1 AC1 5 ARG A 873 LYS A 907 GLY A 911 ARG A 912 SITE 2 AC1 5 HOH A3070 SITE 1 AC2 8 GLY A 700 PRO A 701 LEU A 702 SER A 703 SITE 2 AC2 8 GLN A 910 LEU A 923 PHE A 924 HIS A 926 SITE 1 AC3 2 ARG A 844 ARG A 886 SITE 1 AC4 7 GLY A 733 GLU A 734 PHE A 735 GLY A 736 SITE 2 AC4 7 LYS A 758 HOH A3034 HOH A3050 SITE 1 AC5 3 THR A 754 PHE A 924 ASP A 925 SITE 1 AC6 3 THR A 946 LEU A 947 HOH A3103 SITE 1 AC7 4 HIS A 786 TRP A 856 GLN A 860 HOH A3085 SITE 1 AC8 4 LYS A 907 SER A 909 ARG A 912 HOH A3066 SITE 1 AC9 15 LEU A 730 GLY A 731 GLU A 732 VAL A 738 SITE 2 AC9 15 ALA A 756 VAL A 804 GLU A 805 ALA A 807 SITE 3 AC9 15 SER A 811 LEU A 881 HOH A2218 HOH A3050 SITE 4 AC9 15 HOH A3097 HOH A3123 HOH A3127 CRYST1 71.893 70.569 78.997 90.00 101.15 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013910 0.000000 0.002742 0.00000 SCALE2 0.000000 0.014171 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012902 0.00000