HEADER ISOMERASE 07-JAN-14 4CKL TITLE STRUCTURE OF 55 KDA N-TERMINAL DOMAIN OF E. COLI DNA GYRASE A SUBUNIT TITLE 2 WITH SIMOCYCLINONE D8 BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA GYRASE SUBUNIT A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: 55 KDA N-TERMINAL DOMAIN, RESIDUES 30-522; COMPND 5 EC: 5.99.1.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: JMTACA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B843; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PRJR10.18 KEYWDS ISOMERASE, TOPOISOMERASE, ANTIBIOTIC TARGET EXPDTA X-RAY DIFFRACTION AUTHOR S.J.HEARNSHAW,M.J.EDWARDS,C.E.M.STEVENSON,D.M.LAWSON,A.MAXWELL REVDAT 5 20-DEC-23 4CKL 1 REMARK REVDAT 4 14-MAY-14 4CKL 1 JRNL REVDAT 3 16-APR-14 4CKL 1 JRNL REVDAT 2 19-MAR-14 4CKL 1 JRNL REVDAT 1 12-MAR-14 4CKL 0 JRNL AUTH S.J.HEARNSHAW,M.J.EDWARDS,C.E.STEVENSON,D.M.LAWSON,A.MAXWELL JRNL TITL A NEW CRYSTAL STRUCTURE OF THE BIFUNCTIONAL ANTIBIOTIC JRNL TITL 2 SIMOCYCLINONE D8 BOUND TO DNA GYRASE GIVES FRESH INSIGHT JRNL TITL 3 INTO THE MECHANISM OF INHIBITION. JRNL REF J.MOL.BIOL. V. 426 2023 2014 JRNL REFN ISSN 0022-2836 JRNL PMID 24594357 JRNL DOI 10.1016/J.JMB.2014.02.017 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 73905 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3914 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5358 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 272 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6784 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 284 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.15000 REMARK 3 B22 (A**2) : -0.52000 REMARK 3 B33 (A**2) : 0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.24000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.163 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.146 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.133 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6991 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6727 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9495 ; 1.523 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15370 ; 1.045 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 878 ; 5.601 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 305 ;31.698 ;23.738 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1178 ;13.998 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 57 ;19.071 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1102 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7862 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1515 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3530 ; 1.277 ; 1.955 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3529 ; 1.276 ; 1.954 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4388 ; 1.893 ; 2.922 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3460 ; 2.094 ; 2.254 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 33 A 174 REMARK 3 ORIGIN FOR THE GROUP (A): 29.1722 -42.5485 -29.4781 REMARK 3 T TENSOR REMARK 3 T11: 0.0422 T22: 0.0727 REMARK 3 T33: 0.0076 T12: 0.0193 REMARK 3 T13: 0.0073 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 3.3702 L22: 1.4322 REMARK 3 L33: 1.9499 L12: 1.2285 REMARK 3 L13: -1.1079 L23: -0.3466 REMARK 3 S TENSOR REMARK 3 S11: 0.0110 S12: -0.0111 S13: 0.0698 REMARK 3 S21: 0.0317 S22: -0.0156 S23: 0.0432 REMARK 3 S31: -0.0535 S32: 0.1144 S33: 0.0046 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 179 A 274 REMARK 3 ORIGIN FOR THE GROUP (A): 16.3412 -31.7584 -12.9075 REMARK 3 T TENSOR REMARK 3 T11: 0.3488 T22: 0.1566 REMARK 3 T33: 0.3092 T12: -0.0567 REMARK 3 T13: 0.2067 T23: -0.1668 REMARK 3 L TENSOR REMARK 3 L11: 3.9763 L22: 3.8429 REMARK 3 L33: 2.0132 L12: 2.7965 REMARK 3 L13: -0.4958 L23: -0.9056 REMARK 3 S TENSOR REMARK 3 S11: 0.5388 S12: -0.6091 S13: 0.9468 REMARK 3 S21: 0.5508 S22: -0.3815 S23: 0.8215 REMARK 3 S31: -0.6538 S32: 0.0611 S33: -0.1573 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 275 A 332 REMARK 3 ORIGIN FOR THE GROUP (A): 29.8908 -16.4429 -10.6208 REMARK 3 T TENSOR REMARK 3 T11: 0.8835 T22: 0.4431 REMARK 3 T33: 0.4929 T12: -0.3103 REMARK 3 T13: 0.2785 T23: -0.2350 REMARK 3 L TENSOR REMARK 3 L11: 9.0046 L22: 3.8635 REMARK 3 L33: 1.8489 L12: 5.1850 REMARK 3 L13: 0.9695 L23: 0.1993 REMARK 3 S TENSOR REMARK 3 S11: 0.7062 S12: -0.9060 S13: 1.0427 REMARK 3 S21: 0.9919 S22: -0.5250 S23: 0.5874 REMARK 3 S31: -0.8185 S32: 0.5544 S33: -0.1812 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 333 A 368 REMARK 3 ORIGIN FOR THE GROUP (A): 9.9458 -45.5755 -26.5361 REMARK 3 T TENSOR REMARK 3 T11: 0.0822 T22: 0.0701 REMARK 3 T33: 0.1341 T12: 0.0270 REMARK 3 T13: 0.0138 T23: 0.0377 REMARK 3 L TENSOR REMARK 3 L11: 2.9408 L22: 9.2712 REMARK 3 L33: 1.2150 L12: -0.6633 REMARK 3 L13: -0.4733 L23: 0.9392 REMARK 3 S TENSOR REMARK 3 S11: 0.0413 S12: 0.2679 S13: 0.4744 REMARK 3 S21: -0.4091 S22: -0.0159 S23: 0.4080 REMARK 3 S31: -0.2233 S32: -0.2079 S33: -0.0254 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 369 A 423 REMARK 3 ORIGIN FOR THE GROUP (A): 25.6894 -84.9633 -40.4733 REMARK 3 T TENSOR REMARK 3 T11: 0.0644 T22: 0.0661 REMARK 3 T33: 0.1157 T12: -0.0282 REMARK 3 T13: -0.0072 T23: -0.0266 REMARK 3 L TENSOR REMARK 3 L11: 3.7527 L22: 2.9201 REMARK 3 L33: 3.2317 L12: -1.6396 REMARK 3 L13: -2.0433 L23: 2.1732 REMARK 3 S TENSOR REMARK 3 S11: -0.1730 S12: -0.0675 S13: -0.2488 REMARK 3 S21: 0.1115 S22: 0.0665 S23: 0.0722 REMARK 3 S31: 0.2220 S32: 0.0936 S33: 0.1065 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 424 A 444 REMARK 3 ORIGIN FOR THE GROUP (A): 13.0595 -81.3214 -38.2252 REMARK 3 T TENSOR REMARK 3 T11: 0.1219 T22: 0.2286 REMARK 3 T33: 0.2466 T12: -0.0265 REMARK 3 T13: 0.0050 T23: -0.0614 REMARK 3 L TENSOR REMARK 3 L11: 9.7951 L22: 10.2914 REMARK 3 L33: 9.8985 L12: 2.2919 REMARK 3 L13: -4.5245 L23: 3.2992 REMARK 3 S TENSOR REMARK 3 S11: -0.0549 S12: 0.1293 S13: -0.4856 REMARK 3 S21: 0.3312 S22: -0.2825 S23: 0.5737 REMARK 3 S31: 0.5236 S32: -0.1530 S33: 0.3374 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 445 A 487 REMARK 3 ORIGIN FOR THE GROUP (A): 27.0987 -81.4231 -33.9378 REMARK 3 T TENSOR REMARK 3 T11: 0.1084 T22: 0.0748 REMARK 3 T33: 0.1409 T12: 0.0079 REMARK 3 T13: -0.0004 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 4.4989 L22: 1.7744 REMARK 3 L33: 1.2755 L12: -2.0533 REMARK 3 L13: -2.0641 L23: 1.2099 REMARK 3 S TENSOR REMARK 3 S11: -0.1750 S12: -0.4230 S13: -0.0512 REMARK 3 S21: 0.1287 S22: 0.1087 S23: 0.0115 REMARK 3 S31: 0.1455 S32: 0.2217 S33: 0.0663 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 488 A 521 REMARK 3 ORIGIN FOR THE GROUP (A): 15.0237 -54.2040 -15.1577 REMARK 3 T TENSOR REMARK 3 T11: 0.0998 T22: 0.1405 REMARK 3 T33: 0.0499 T12: 0.0032 REMARK 3 T13: 0.0324 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 3.3000 L22: 7.1738 REMARK 3 L33: 1.8953 L12: 4.3915 REMARK 3 L13: -0.1062 L23: 0.9159 REMARK 3 S TENSOR REMARK 3 S11: 0.2532 S12: -0.3291 S13: -0.0536 REMARK 3 S21: 0.2507 S22: -0.2516 S23: 0.0221 REMARK 3 S31: -0.2146 S32: 0.0336 S33: -0.0015 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 33 B 90 REMARK 3 ORIGIN FOR THE GROUP (A): 8.0906 -64.4350 8.1702 REMARK 3 T TENSOR REMARK 3 T11: 0.0079 T22: 0.0437 REMARK 3 T33: 0.0931 T12: 0.0041 REMARK 3 T13: -0.0037 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 1.7210 L22: 0.5251 REMARK 3 L33: 4.2227 L12: 0.2025 REMARK 3 L13: 0.7684 L23: -1.1940 REMARK 3 S TENSOR REMARK 3 S11: 0.0246 S12: 0.0483 S13: -0.0450 REMARK 3 S21: 0.0394 S22: 0.0659 S23: 0.0923 REMARK 3 S31: -0.1088 S32: -0.0440 S33: -0.0905 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 91 B 132 REMARK 3 ORIGIN FOR THE GROUP (A): 18.4327 -60.1508 4.1967 REMARK 3 T TENSOR REMARK 3 T11: 0.0774 T22: 0.1461 REMARK 3 T33: 0.1273 T12: -0.0206 REMARK 3 T13: 0.0820 T23: -0.0185 REMARK 3 L TENSOR REMARK 3 L11: 2.9392 L22: 1.3593 REMARK 3 L33: 6.0189 L12: -0.7171 REMARK 3 L13: 4.1048 L23: -1.2124 REMARK 3 S TENSOR REMARK 3 S11: -0.1398 S12: 0.4536 S13: 0.0991 REMARK 3 S21: -0.0014 S22: 0.1271 S23: -0.1771 REMARK 3 S31: -0.3247 S32: 0.5765 S33: 0.0127 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 133 B 161 REMARK 3 ORIGIN FOR THE GROUP (A): 4.7480 -72.9427 16.4088 REMARK 3 T TENSOR REMARK 3 T11: 0.1228 T22: 0.0747 REMARK 3 T33: 0.0615 T12: -0.0407 REMARK 3 T13: -0.0324 T23: 0.0223 REMARK 3 L TENSOR REMARK 3 L11: 8.0660 L22: 3.0035 REMARK 3 L33: 1.2242 L12: -2.8331 REMARK 3 L13: 3.0148 L23: -1.4644 REMARK 3 S TENSOR REMARK 3 S11: 0.1919 S12: 0.1123 S13: -0.2761 REMARK 3 S21: -0.0137 S22: -0.0721 S23: 0.0946 REMARK 3 S31: 0.1022 S32: 0.0217 S33: -0.1198 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 162 B 332 REMARK 3 ORIGIN FOR THE GROUP (A): 29.0061 -48.5697 18.9172 REMARK 3 T TENSOR REMARK 3 T11: 0.1253 T22: 0.1319 REMARK 3 T33: 0.1518 T12: -0.0425 REMARK 3 T13: -0.0659 T23: -0.0186 REMARK 3 L TENSOR REMARK 3 L11: 2.0311 L22: 3.5897 REMARK 3 L33: 2.5280 L12: 0.8968 REMARK 3 L13: 0.2824 L23: -0.8591 REMARK 3 S TENSOR REMARK 3 S11: -0.1210 S12: 0.1697 S13: 0.3409 REMARK 3 S21: -0.0230 S22: -0.0120 S23: -0.0822 REMARK 3 S31: -0.4745 S32: 0.2655 S33: 0.1330 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 333 B 369 REMARK 3 ORIGIN FOR THE GROUP (A): 13.4635 -69.2722 29.1447 REMARK 3 T TENSOR REMARK 3 T11: 0.0934 T22: 0.1458 REMARK 3 T33: 0.1127 T12: -0.0155 REMARK 3 T13: -0.0450 T23: 0.0268 REMARK 3 L TENSOR REMARK 3 L11: 1.3297 L22: 7.6978 REMARK 3 L33: 1.6005 L12: 1.3186 REMARK 3 L13: 0.3478 L23: 0.7476 REMARK 3 S TENSOR REMARK 3 S11: 0.1634 S12: -0.3985 S13: -0.0515 REMARK 3 S21: 0.3899 S22: -0.0832 S23: 0.4925 REMARK 3 S31: 0.0405 S32: -0.1611 S33: -0.0802 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 370 B 455 REMARK 3 ORIGIN FOR THE GROUP (A): 2.5136-105.5643 16.5933 REMARK 3 T TENSOR REMARK 3 T11: 0.6199 T22: 0.2465 REMARK 3 T33: 0.5032 T12: -0.1197 REMARK 3 T13: 0.0506 T23: 0.0725 REMARK 3 L TENSOR REMARK 3 L11: 4.3150 L22: 5.7370 REMARK 3 L33: 2.9797 L12: 4.6884 REMARK 3 L13: 3.4579 L23: 4.0356 REMARK 3 S TENSOR REMARK 3 S11: 0.3224 S12: -0.2315 S13: -0.3754 REMARK 3 S21: 0.6283 S22: -0.1908 S23: 0.0651 REMARK 3 S31: 0.5697 S32: -0.2561 S33: -0.1316 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 456 B 487 REMARK 3 ORIGIN FOR THE GROUP (A): 9.7541-102.5360 10.3209 REMARK 3 T TENSOR REMARK 3 T11: 0.6230 T22: 1.0091 REMARK 3 T33: 0.6647 T12: -0.0509 REMARK 3 T13: 0.1623 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 2.2602 L22: 13.6072 REMARK 3 L33: 0.6905 L12: -5.5285 REMARK 3 L13: -1.2395 L23: 3.0537 REMARK 3 S TENSOR REMARK 3 S11: -0.6983 S12: -0.4406 S13: 0.2763 REMARK 3 S21: 1.0383 S22: 1.0937 S23: -0.7519 REMARK 3 S31: 0.2630 S32: 0.3251 S33: -0.3954 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 488 B 522 REMARK 3 ORIGIN FOR THE GROUP (A): 25.2199 -76.1805 24.2204 REMARK 3 T TENSOR REMARK 3 T11: 0.1139 T22: 0.1329 REMARK 3 T33: 0.2096 T12: 0.0526 REMARK 3 T13: -0.0922 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 3.1567 L22: 5.9819 REMARK 3 L33: 2.0340 L12: 2.7395 REMARK 3 L13: -0.6920 L23: -1.8923 REMARK 3 S TENSOR REMARK 3 S11: 0.1064 S12: -0.2453 S13: -0.5092 REMARK 3 S21: 0.1334 S22: -0.0280 S23: -0.2750 REMARK 3 S31: 0.3206 S32: 0.1951 S33: -0.0784 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4CKL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1290059360. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9173 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77820 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 41.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.90000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4CKK REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 80.41000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.02500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 80.41000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 48.02500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 76.22006 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -82.54105 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2024 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 30 REMARK 465 GLY A 31 REMARK 465 ARG A 32 REMARK 465 ALA A 175 REMARK 465 VAL A 176 REMARK 465 GLY A 177 REMARK 465 MET A 178 REMARK 465 ALA A 246 REMARK 465 GLU A 247 REMARK 465 VAL A 248 REMARK 465 GLU A 249 REMARK 465 VAL A 250 REMARK 465 ASP A 251 REMARK 465 ALA A 252 REMARK 465 LYS A 253 REMARK 465 THR A 254 REMARK 465 GLY A 255 REMARK 465 ARG A 256 REMARK 465 GLU A 257 REMARK 465 THR A 258 REMARK 465 GLU A 283 REMARK 465 LYS A 284 REMARK 465 ARG A 285 REMARK 465 VAL A 286 REMARK 465 GLU A 287 REMARK 465 GLY A 288 REMARK 465 ILE A 289 REMARK 465 SER A 290 REMARK 465 ALA A 291 REMARK 465 GLU A 306 REMARK 465 VAL A 307 REMARK 465 LYS A 308 REMARK 465 ARG A 309 REMARK 465 ASP A 310 REMARK 465 ALA A 311 REMARK 465 VAL A 312 REMARK 465 GLY A 313 REMARK 465 GLU A 314 REMARK 465 ARG A 426 REMARK 465 ALA A 427 REMARK 465 GLY A 428 REMARK 465 ASP A 429 REMARK 465 THR A 522 REMARK 465 VAL B 30 REMARK 465 GLY B 31 REMARK 465 ARG B 32 REMARK 465 GLY B 173 REMARK 465 ILE B 174 REMARK 465 ALA B 175 REMARK 465 VAL B 176 REMARK 465 GLY B 177 REMARK 465 MET B 178 REMARK 465 VAL B 250 REMARK 465 ASP B 251 REMARK 465 ALA B 252 REMARK 465 LYS B 253 REMARK 465 THR B 254 REMARK 465 GLY B 255 REMARK 465 ARG B 256 REMARK 465 GLU B 257 REMARK 465 VAL B 307 REMARK 465 LYS B 308 REMARK 465 ARG B 309 REMARK 465 ASP B 310 REMARK 465 ALA B 311 REMARK 465 VAL B 312 REMARK 465 GLY B 313 REMARK 465 ARG B 398 REMARK 465 HIS B 399 REMARK 465 ALA B 400 REMARK 465 PRO B 401 REMARK 465 THR B 402 REMARK 465 PRO B 403 REMARK 465 ALA B 404 REMARK 465 GLU B 405 REMARK 465 ALA B 406 REMARK 465 LYS B 407 REMARK 465 THR B 408 REMARK 465 ALA B 409 REMARK 465 LEU B 410 REMARK 465 VAL B 411 REMARK 465 ALA B 412 REMARK 465 ASN B 419 REMARK 465 VAL B 420 REMARK 465 ALA B 421 REMARK 465 ALA B 422 REMARK 465 MET B 423 REMARK 465 LEU B 424 REMARK 465 GLU B 425 REMARK 465 ARG B 426 REMARK 465 ALA B 427 REMARK 465 GLY B 428 REMARK 465 ASP B 429 REMARK 465 GLU B 440 REMARK 465 PHE B 441 REMARK 465 GLY B 442 REMARK 465 VAL B 443 REMARK 465 ARG B 444 REMARK 465 ASP B 445 REMARK 465 GLY B 446 REMARK 465 THR B 467 REMARK 465 GLY B 468 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 223 CG1 CG2 CD1 REMARK 470 ASN A 224 CG OD1 ND2 REMARK 470 ARG A 226 NE CZ NH1 NH2 REMARK 470 ARG A 227 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 230 CG CD OE1 OE2 REMARK 470 ARG A 234 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 237 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 239 CE NZ REMARK 470 ILE A 259 CG1 CG2 CD1 REMARK 470 ARG A 272 CD NE CZ NH1 NH2 REMARK 470 GLU A 275 CG CD OE1 OE2 REMARK 470 ILE A 277 CG1 CG2 CD1 REMARK 470 GLU A 279 CG CD OE1 OE2 REMARK 470 LYS A 282 CG CD CE NZ REMARK 470 ARG A 293 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 295 CG CD OE1 OE2 REMARK 470 ASP A 299 CG OD1 OD2 REMARK 470 ARG A 302 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 315 CG1 CG2 REMARK 470 VAL A 316 CG1 CG2 REMARK 470 ASN A 318 CG OD1 ND2 REMARK 470 SER A 322 OG REMARK 470 GLN A 323 CG CD OE1 NE2 REMARK 470 GLN A 327 CG CD OE1 NE2 REMARK 470 LYS A 343 CG CD CE NZ REMARK 470 ARG A 356 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 359 NE CZ NH1 NH2 REMARK 470 ASP A 430 CG OD1 OD2 REMARK 470 ASP A 445 CG OD1 OD2 REMARK 470 GLU A 480 CG CD OE1 OE2 REMARK 470 ARG A 490 NE CZ NH1 NH2 REMARK 470 LYS A 516 CE NZ REMARK 470 ILE A 521 CG1 CG2 CD1 REMARK 470 GLU B 201 CG CD OE1 OE2 REMARK 470 GLU B 206 CG CD OE1 OE2 REMARK 470 GLU B 249 CG CD OE1 OE2 REMARK 470 GLU B 279 CG CD OE1 OE2 REMARK 470 LYS B 282 CG CD CE NZ REMARK 470 GLU B 287 CG CD OE1 OE2 REMARK 470 LYS B 298 CG CD CE NZ REMARK 470 GLU B 314 CG CD OE1 OE2 REMARK 470 ARG B 356 NE CZ NH1 NH2 REMARK 470 LEU B 383 CG CD1 CD2 REMARK 470 LEU B 387 CG CD1 CD2 REMARK 470 ILE B 390 CG1 CG2 CD1 REMARK 470 ILE B 394 CG1 CG2 CD1 REMARK 470 ILE B 397 CG1 CG2 CD1 REMARK 470 ASN B 413 CG OD1 ND2 REMARK 470 GLN B 416 CG CD OE1 NE2 REMARK 470 ASP B 430 CG OD1 OD2 REMARK 470 ARG B 433 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 435 CG CD OE1 OE2 REMARK 470 LEU B 447 CG CD1 CD2 REMARK 470 TYR B 448 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN B 453 CG CD OE1 NE2 REMARK 470 GLN B 456 CD OE1 NE2 REMARK 470 LEU B 461 CG CD1 CD2 REMARK 470 ARG B 462 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 464 CG CD OE1 NE2 REMARK 470 LYS B 465 CG CD CE NZ REMARK 470 LEU B 469 CG CD1 CD2 REMARK 470 GLU B 472 CG CD OE1 OE2 REMARK 470 LEU B 475 CG CD1 CD2 REMARK 470 ASP B 476 CG OD1 OD2 REMARK 470 LYS B 479 CG CD CE NZ REMARK 470 GLU B 480 CG CD OE1 OE2 REMARK 470 ASP B 483 CG OD1 OD2 REMARK 470 GLU B 487 CG CD OE1 OE2 REMARK 470 GLU B 511 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 111 OD1 ASP A 115 2.08 REMARK 500 NH1 ARG A 91 O4D SM8 A 1522 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 245 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 LEU A 461 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 82 -166.26 -103.37 REMARK 500 ALA A 220 -124.19 62.82 REMARK 500 ALA A 221 -155.73 68.64 REMARK 500 VAL A 281 43.94 -66.00 REMARK 500 ALA B 220 -125.50 61.79 REMARK 500 ALA B 221 -155.64 67.10 REMARK 500 LYS B 284 -56.77 108.33 REMARK 500 ARG B 285 -31.09 -32.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SM8 A 1522 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CKK RELATED DB: PDB REMARK 900 APO STRUCTURE OF 55 KDA N-TERMINAL DOMAIN OF E. COLI DNA GYRASE A REMARK 900 SUBUNIT DBREF 4CKL A 30 522 UNP P0AES5 GYRA_SHIFL 30 522 DBREF 4CKL B 30 522 UNP P0AES5 GYRA_SHIFL 30 522 SEQRES 1 A 493 VAL GLY ARG ALA LEU PRO ASP VAL ARG ASP GLY LEU LYS SEQRES 2 A 493 PRO VAL HIS ARG ARG VAL LEU TYR ALA MET ASN VAL LEU SEQRES 3 A 493 GLY ASN ASP TRP ASN LYS ALA TYR LYS LYS SER ALA ARG SEQRES 4 A 493 VAL VAL GLY ASP VAL ILE GLY LYS TYR HIS PRO HIS GLY SEQRES 5 A 493 ASP SER ALA VAL TYR ASP THR ILE VAL ARG MET ALA GLN SEQRES 6 A 493 PRO PHE SER LEU ARG TYR MET LEU VAL ASP GLY GLN GLY SEQRES 7 A 493 ASN PHE GLY SER ILE ASP GLY ASP SER ALA ALA ALA MET SEQRES 8 A 493 ARG TYR THR GLU ILE ARG LEU ALA LYS ILE ALA HIS GLU SEQRES 9 A 493 LEU MET ALA ASP LEU GLU LYS GLU THR VAL ASP PHE VAL SEQRES 10 A 493 ASP ASN TYR ASP GLY THR GLU LYS ILE PRO ASP VAL MET SEQRES 11 A 493 PRO THR LYS ILE PRO ASN LEU LEU VAL ASN GLY SER SER SEQRES 12 A 493 GLY ILE ALA VAL GLY MET ALA THR ASN ILE PRO PRO HIS SEQRES 13 A 493 ASN LEU THR GLU VAL ILE ASN GLY CYS LEU ALA TYR ILE SEQRES 14 A 493 ASP ASP GLU ASP ILE SER ILE GLU GLY LEU MET GLU HIS SEQRES 15 A 493 ILE PRO GLY PRO ASP PHE PRO THR ALA ALA ILE ILE ASN SEQRES 16 A 493 GLY ARG ARG GLY ILE GLU GLU ALA TYR ARG THR GLY ARG SEQRES 17 A 493 GLY LYS VAL TYR ILE ARG ALA ARG ALA GLU VAL GLU VAL SEQRES 18 A 493 ASP ALA LYS THR GLY ARG GLU THR ILE ILE VAL HIS GLU SEQRES 19 A 493 ILE PRO TYR GLN VAL ASN LYS ALA ARG LEU ILE GLU LYS SEQRES 20 A 493 ILE ALA GLU LEU VAL LYS GLU LYS ARG VAL GLU GLY ILE SEQRES 21 A 493 SER ALA LEU ARG ASP GLU SER ASP LYS ASP GLY MET ARG SEQRES 22 A 493 ILE VAL ILE GLU VAL LYS ARG ASP ALA VAL GLY GLU VAL SEQRES 23 A 493 VAL LEU ASN ASN LEU TYR SER GLN THR GLN LEU GLN VAL SEQRES 24 A 493 SER PHE GLY ILE ASN MET VAL ALA LEU HIS HIS GLY GLN SEQRES 25 A 493 PRO LYS ILE MET ASN LEU LYS ASP ILE ILE ALA ALA PHE SEQRES 26 A 493 VAL ARG HIS ARG ARG GLU VAL VAL THR ARG ARG THR ILE SEQRES 27 A 493 PHE GLU LEU ARG LYS ALA ARG ASP ARG ALA HIS ILE LEU SEQRES 28 A 493 GLU ALA LEU ALA VAL ALA LEU ALA ASN ILE ASP PRO ILE SEQRES 29 A 493 ILE GLU LEU ILE ARG HIS ALA PRO THR PRO ALA GLU ALA SEQRES 30 A 493 LYS THR ALA LEU VAL ALA ASN PRO TRP GLN LEU GLY ASN SEQRES 31 A 493 VAL ALA ALA MET LEU GLU ARG ALA GLY ASP ASP ALA ALA SEQRES 32 A 493 ARG PRO GLU TRP LEU GLU PRO GLU PHE GLY VAL ARG ASP SEQRES 33 A 493 GLY LEU TYR TYR LEU THR GLU GLN GLN ALA GLN ALA ILE SEQRES 34 A 493 LEU ASP LEU ARG LEU GLN LYS LEU THR GLY LEU GLU HIS SEQRES 35 A 493 GLU LYS LEU LEU ASP GLU TYR LYS GLU LEU LEU ASP GLN SEQRES 36 A 493 ILE ALA GLU LEU LEU ARG ILE LEU GLY SER ALA ASP ARG SEQRES 37 A 493 LEU MET GLU VAL ILE ARG GLU GLU LEU GLU LEU VAL ARG SEQRES 38 A 493 GLU GLN PHE GLY ASP LYS ARG ARG THR GLU ILE THR SEQRES 1 B 493 VAL GLY ARG ALA LEU PRO ASP VAL ARG ASP GLY LEU LYS SEQRES 2 B 493 PRO VAL HIS ARG ARG VAL LEU TYR ALA MET ASN VAL LEU SEQRES 3 B 493 GLY ASN ASP TRP ASN LYS ALA TYR LYS LYS SER ALA ARG SEQRES 4 B 493 VAL VAL GLY ASP VAL ILE GLY LYS TYR HIS PRO HIS GLY SEQRES 5 B 493 ASP SER ALA VAL TYR ASP THR ILE VAL ARG MET ALA GLN SEQRES 6 B 493 PRO PHE SER LEU ARG TYR MET LEU VAL ASP GLY GLN GLY SEQRES 7 B 493 ASN PHE GLY SER ILE ASP GLY ASP SER ALA ALA ALA MET SEQRES 8 B 493 ARG TYR THR GLU ILE ARG LEU ALA LYS ILE ALA HIS GLU SEQRES 9 B 493 LEU MET ALA ASP LEU GLU LYS GLU THR VAL ASP PHE VAL SEQRES 10 B 493 ASP ASN TYR ASP GLY THR GLU LYS ILE PRO ASP VAL MET SEQRES 11 B 493 PRO THR LYS ILE PRO ASN LEU LEU VAL ASN GLY SER SER SEQRES 12 B 493 GLY ILE ALA VAL GLY MET ALA THR ASN ILE PRO PRO HIS SEQRES 13 B 493 ASN LEU THR GLU VAL ILE ASN GLY CYS LEU ALA TYR ILE SEQRES 14 B 493 ASP ASP GLU ASP ILE SER ILE GLU GLY LEU MET GLU HIS SEQRES 15 B 493 ILE PRO GLY PRO ASP PHE PRO THR ALA ALA ILE ILE ASN SEQRES 16 B 493 GLY ARG ARG GLY ILE GLU GLU ALA TYR ARG THR GLY ARG SEQRES 17 B 493 GLY LYS VAL TYR ILE ARG ALA ARG ALA GLU VAL GLU VAL SEQRES 18 B 493 ASP ALA LYS THR GLY ARG GLU THR ILE ILE VAL HIS GLU SEQRES 19 B 493 ILE PRO TYR GLN VAL ASN LYS ALA ARG LEU ILE GLU LYS SEQRES 20 B 493 ILE ALA GLU LEU VAL LYS GLU LYS ARG VAL GLU GLY ILE SEQRES 21 B 493 SER ALA LEU ARG ASP GLU SER ASP LYS ASP GLY MET ARG SEQRES 22 B 493 ILE VAL ILE GLU VAL LYS ARG ASP ALA VAL GLY GLU VAL SEQRES 23 B 493 VAL LEU ASN ASN LEU TYR SER GLN THR GLN LEU GLN VAL SEQRES 24 B 493 SER PHE GLY ILE ASN MET VAL ALA LEU HIS HIS GLY GLN SEQRES 25 B 493 PRO LYS ILE MET ASN LEU LYS ASP ILE ILE ALA ALA PHE SEQRES 26 B 493 VAL ARG HIS ARG ARG GLU VAL VAL THR ARG ARG THR ILE SEQRES 27 B 493 PHE GLU LEU ARG LYS ALA ARG ASP ARG ALA HIS ILE LEU SEQRES 28 B 493 GLU ALA LEU ALA VAL ALA LEU ALA ASN ILE ASP PRO ILE SEQRES 29 B 493 ILE GLU LEU ILE ARG HIS ALA PRO THR PRO ALA GLU ALA SEQRES 30 B 493 LYS THR ALA LEU VAL ALA ASN PRO TRP GLN LEU GLY ASN SEQRES 31 B 493 VAL ALA ALA MET LEU GLU ARG ALA GLY ASP ASP ALA ALA SEQRES 32 B 493 ARG PRO GLU TRP LEU GLU PRO GLU PHE GLY VAL ARG ASP SEQRES 33 B 493 GLY LEU TYR TYR LEU THR GLU GLN GLN ALA GLN ALA ILE SEQRES 34 B 493 LEU ASP LEU ARG LEU GLN LYS LEU THR GLY LEU GLU HIS SEQRES 35 B 493 GLU LYS LEU LEU ASP GLU TYR LYS GLU LEU LEU ASP GLN SEQRES 36 B 493 ILE ALA GLU LEU LEU ARG ILE LEU GLY SER ALA ASP ARG SEQRES 37 B 493 LEU MET GLU VAL ILE ARG GLU GLU LEU GLU LEU VAL ARG SEQRES 38 B 493 GLU GLN PHE GLY ASP LYS ARG ARG THR GLU ILE THR HET SM8 A1522 66 HETNAM SM8 SIMOCYCLINONE D8 FORMUL 3 SM8 C46 H42 CL N O18 FORMUL 4 HOH *284(H2 O) HELIX 1 1 LYS A 42 LEU A 55 1 14 HELIX 2 2 SER A 66 TYR A 77 1 12 HELIX 3 3 SER A 83 GLN A 94 1 12 HELIX 4 4 ALA A 128 MET A 135 1 8 HELIX 5 5 ASP A 137 GLU A 141 5 5 HELIX 6 6 PRO A 164 GLY A 170 1 7 HELIX 7 7 ASN A 186 ASP A 200 1 15 HELIX 8 8 SER A 204 GLU A 210 1 7 HELIX 9 9 GLY A 225 GLY A 236 1 12 HELIX 10 10 ASN A 269 VAL A 281 1 13 HELIX 11 11 VAL A 315 THR A 324 1 10 HELIX 12 12 ASN A 346 ASN A 389 1 44 HELIX 13 13 ASN A 389 HIS A 399 1 11 HELIX 14 14 THR A 402 ASN A 413 1 12 HELIX 15 15 VAL A 420 GLU A 425 1 6 HELIX 16 16 THR A 451 ASP A 460 1 10 HELIX 17 17 ARG A 462 LEU A 466 5 5 HELIX 18 18 THR A 467 GLY A 493 1 27 HELIX 19 19 SER A 494 GLY A 514 1 21 HELIX 20 20 LYS B 42 LEU B 55 1 14 HELIX 21 21 SER B 66 TYR B 77 1 12 HELIX 22 22 SER B 83 GLN B 94 1 12 HELIX 23 23 ALA B 128 MET B 135 1 8 HELIX 24 24 ASP B 137 GLU B 141 5 5 HELIX 25 25 PRO B 164 GLY B 170 1 7 HELIX 26 26 ASN B 186 ASP B 200 1 15 HELIX 27 27 SER B 204 GLU B 210 1 7 HELIX 28 28 GLY B 225 GLY B 236 1 12 HELIX 29 29 ASN B 269 LYS B 284 1 16 HELIX 30 30 GLU B 314 THR B 324 1 11 HELIX 31 31 ASN B 346 ASN B 389 1 44 HELIX 32 32 ASN B 389 ILE B 397 1 9 HELIX 33 33 THR B 451 ASP B 460 1 10 HELIX 34 34 ARG B 462 LEU B 466 5 5 HELIX 35 35 LEU B 469 SER B 494 1 26 HELIX 36 36 SER B 494 GLY B 514 1 21 SHEET 1 AA 3 LYS A 64 LYS A 65 0 SHEET 2 AA 3 GLU A 124 LEU A 127 -1 O ILE A 125 N LYS A 64 SHEET 3 AA 3 VAL A 103 GLN A 106 -1 O ASP A 104 N ARG A 126 SHEET 1 AB 2 PHE A 145 ASP A 147 0 SHEET 2 AB 2 LYS A 154 PRO A 156 -1 O ILE A 155 N VAL A 146 SHEET 1 AC 2 SER A 171 GLY A 173 0 SHEET 2 AC 2 THR A 180 ILE A 182 -1 O THR A 180 N GLY A 173 SHEET 1 AD 3 ILE A 222 ASN A 224 0 SHEET 2 AD 3 ARG A 237 ARG A 243 -1 O TYR A 241 N ASN A 224 SHEET 3 AD 3 GLN A 327 ASN A 333 -1 O VAL A 328 N ILE A 242 SHEET 1 AE 3 ILE A 260 VAL A 261 0 SHEET 2 AE 3 ILE A 303 VAL A 304 -1 O ILE A 303 N VAL A 261 SHEET 3 AE 3 ARG A 293 ASP A 294 -1 O ARG A 293 N VAL A 304 SHEET 1 AF 2 VAL A 335 HIS A 338 0 SHEET 2 AF 2 GLN A 341 ILE A 344 -1 O GLN A 341 N HIS A 338 SHEET 1 AG 3 TRP A 415 GLN A 416 0 SHEET 2 AG 3 LEU A 447 TYR A 449 -1 O TYR A 448 N TRP A 415 SHEET 3 AG 3 GLY A 442 VAL A 443 -1 O GLY A 442 N TYR A 449 SHEET 1 BA 3 LYS B 64 LYS B 65 0 SHEET 2 BA 3 GLU B 124 LEU B 127 -1 O ILE B 125 N LYS B 64 SHEET 3 BA 3 VAL B 103 GLN B 106 -1 O ASP B 104 N ARG B 126 SHEET 1 BB 2 PHE B 145 ASP B 147 0 SHEET 2 BB 2 LYS B 154 PRO B 156 -1 O ILE B 155 N VAL B 146 SHEET 1 BC 4 GLN B 327 ASN B 333 0 SHEET 2 BC 4 ARG B 237 ARG B 243 -1 O GLY B 238 N ILE B 332 SHEET 3 BC 4 ILE B 222 ASN B 224 -1 O ILE B 222 N ARG B 243 SHEET 4 BC 4 GLU B 520 THR B 522 1 O GLU B 520 N ILE B 223 SHEET 1 BD 4 ARG B 245 VAL B 248 0 SHEET 2 BD 4 ILE B 259 GLU B 263 -1 O ILE B 260 N GLU B 247 SHEET 3 BD 4 ILE B 303 GLU B 306 -1 O ILE B 303 N VAL B 261 SHEET 4 BD 4 ALA B 291 ASP B 294 -1 O ALA B 291 N GLU B 306 SHEET 1 BE 2 VAL B 335 HIS B 338 0 SHEET 2 BE 2 GLN B 341 ILE B 344 -1 O GLN B 341 N HIS B 338 SITE 1 AC1 21 LYS A 42 VAL A 44 HIS A 45 HIS A 80 SITE 2 AC1 21 GLY A 81 ASP A 82 SER A 83 TYR A 86 SITE 3 AC1 21 ARG A 91 ALA A 119 MET A 120 ARG A 121 SITE 4 AC1 21 ASN A 169 GLY A 170 SER A 172 HOH A2028 SITE 5 AC1 21 HOH A2029 HOH A2031 HOH A2158 HOH A2159 SITE 6 AC1 21 ASP B 199 CRYST1 160.820 96.050 112.350 90.00 132.72 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006218 0.000000 0.005742 0.00000 SCALE2 0.000000 0.010411 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012115 0.00000