HEADER PROTEIN TRANSPORT 14-JAN-14 4CLC TITLE CRYSTAL STRUCTURE OF YBR137W PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: UPF0303 PROTEIN YBR137W; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: UPF0303 PROTEIN YBR137W; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: UPF0303 PROTEIN YBR137W; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: UPF0303 PROTEIN YBR137W; COMPND 15 CHAIN: D; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 5; COMPND 18 MOLECULE: UPF0303 PROTEIN YBR137W; COMPND 19 CHAIN: E; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 14 ORGANISM_TAXID: 4932; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 EXPRESSION_SYSTEM_VECTOR: ESCHERICHIA COLI; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 21 MOL_ID: 3; SOURCE 22 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 23 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 24 ORGANISM_TAXID: 4932; SOURCE 25 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 26 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 27 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 28 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 29 EXPRESSION_SYSTEM_VECTOR: ESCHERICHIA COLI; SOURCE 30 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 31 MOL_ID: 4; SOURCE 32 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 33 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 34 ORGANISM_TAXID: 4932; SOURCE 35 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 36 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 37 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 38 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 39 EXPRESSION_SYSTEM_VECTOR: ESCHERICHIA COLI; SOURCE 40 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 41 MOL_ID: 5; SOURCE 42 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 43 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 44 ORGANISM_TAXID: 4932; SOURCE 45 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 46 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 47 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 48 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 49 EXPRESSION_SYSTEM_VECTOR: ESCHERICHIA COLI; SOURCE 50 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS PROTEIN TRANSPORT, GET, GET PATHWAY EXPDTA X-RAY DIFFRACTION AUTHOR Y.-H.YEH,T.-W.LIN,C.-Y.LIN,C.-D.HSIAO REVDAT 3 16-OCT-19 4CLC 1 REMARK REVDAT 2 26-NOV-14 4CLC 1 JRNL REVDAT 1 19-NOV-14 4CLC 0 JRNL AUTH Y.YEH,T.LIN,Y.LI,J.TUNG,C.LIN,C.HSIAO JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF YBR137WP JRNL TITL 2 IMPLICATE ITS INVOLVEMENT IN THE TARGETING OF TAIL-ANCHORED JRNL TITL 3 PROTEINS TO MEMBRANES. JRNL REF MOL.CELL.BIOL. V. 34 4500 2014 JRNL REFN ISSN 0270-7306 JRNL PMID 25288638 JRNL DOI 10.1128/MCB.00697-14 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH F.WANG,E.C.BROWN,G.MAK,J.ZHUANG,V.DENIC REMARK 1 TITL A CHAPERONE CASCADE SORTS PROTEINS FOR POSTTRANSLATIONAL REMARK 1 TITL 2 MEMBRANE INSERTION INTO THE ENDOPLASMIC RETICULUM. REMARK 1 REF MOL.CELL V. 40 159 2010 REMARK 1 REFN ISSN 1097-2765 REMARK 1 PMID 20850366 REMARK 1 DOI 10.1016/J.MOLCEL.2010.08.038 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 30592 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1992 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.9654 - 6.7167 0.91 2061 142 0.1849 0.2377 REMARK 3 2 6.7167 - 5.3449 0.94 2049 142 0.2152 0.2601 REMARK 3 3 5.3449 - 4.6732 0.94 2037 141 0.1741 0.2267 REMARK 3 4 4.6732 - 4.2477 0.94 2012 145 0.1605 0.2004 REMARK 3 5 4.2477 - 3.9443 0.96 2052 138 0.1807 0.2195 REMARK 3 6 3.9443 - 3.7124 0.96 2030 142 0.1908 0.3017 REMARK 3 7 3.7124 - 3.5269 0.96 2051 145 0.1986 0.2447 REMARK 3 8 3.5269 - 3.3736 0.97 2030 142 0.2182 0.2884 REMARK 3 9 3.3736 - 3.2440 0.97 2053 145 0.2378 0.3393 REMARK 3 10 3.2440 - 3.1322 0.97 2038 143 0.2610 0.3503 REMARK 3 11 3.1322 - 3.0344 0.97 2058 144 0.2665 0.3406 REMARK 3 12 3.0344 - 2.9478 0.97 2057 142 0.2898 0.3927 REMARK 3 13 2.9478 - 2.8703 0.97 2035 142 0.3123 0.3857 REMARK 3 14 2.8703 - 2.8003 0.96 2037 139 0.3193 0.3803 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 60.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 6743 REMARK 3 ANGLE : 1.363 9130 REMARK 3 CHIRALITY : 0.055 1009 REMARK 3 PLANARITY : 0.007 1183 REMARK 3 DIHEDRAL : 14.556 2387 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: MANY RESIDUES WERE REPLACED TO ALA OR REMARK 3 GLYCINE DUE TO THEIR POOR ELECTRON DENSITY MAP. IN ADDITION, C- REMARK 3 TERMINAL LENGTH OF YBR137WP IN THIS STRUCTURE, WE JUST TRACED TO REMARK 3 169-173. REMARK 4 REMARK 4 4CLC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1290059337. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 50 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30600 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL PH8, 0 30% MPD, VAPOR REMARK 280 DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.50000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 81.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 81.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 40.50000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 60060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -127.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 171 REMARK 465 LEU A 172 REMARK 465 GLU A 173 REMARK 465 GLU A 174 REMARK 465 ASP A 175 REMARK 465 LEU A 176 REMARK 465 ASN A 177 REMARK 465 LEU A 178 REMARK 465 ASP A 179 REMARK 465 SER B 171 REMARK 465 LEU B 172 REMARK 465 GLU B 173 REMARK 465 GLU B 174 REMARK 465 ASP B 175 REMARK 465 LEU B 176 REMARK 465 ASN B 177 REMARK 465 LEU B 178 REMARK 465 ASP B 179 REMARK 465 ASP C 175 REMARK 465 LEU C 176 REMARK 465 ASN C 177 REMARK 465 LEU C 178 REMARK 465 ASP C 179 REMARK 465 GLU D 174 REMARK 465 ASP D 175 REMARK 465 LEU D 176 REMARK 465 ASN D 177 REMARK 465 LEU D 178 REMARK 465 ASP D 179 REMARK 465 GLU E 174 REMARK 465 ASP E 175 REMARK 465 LEU E 176 REMARK 465 ASN E 177 REMARK 465 LEU E 178 REMARK 465 ASP E 179 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 LYS A 7 CG CD CE NZ REMARK 470 ARG A 15 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 16 CG CD CE NZ REMARK 470 GLU A 20 CG CD OE1 OE2 REMARK 470 LYS A 27 CG CD CE NZ REMARK 470 ARG A 28 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 91 CG CD CE NZ REMARK 470 GLU A 137 CG CD OE1 OE2 REMARK 470 ARG A 138 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 152 CG CD CE NZ REMARK 470 GLU A 170 CG CD OE1 OE2 REMARK 470 LEU B 4 CG CD1 CD2 REMARK 470 LYS B 6 CG CD CE NZ REMARK 470 LYS B 7 CG CD CE NZ REMARK 470 GLU B 10 CG CD OE1 OE2 REMARK 470 ARG B 15 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 16 CG CD CE NZ REMARK 470 VAL B 17 CB CG1 CG2 REMARK 470 LYS B 27 CG CD CE NZ REMARK 470 GLU B 52 CG CD OE1 OE2 REMARK 470 LYS B 57 CG CD CE NZ REMARK 470 LYS B 112 CG CD CE NZ REMARK 470 GLU B 115 CB CG CD OE1 OE2 REMARK 470 GLU B 116 CG CD OE1 OE2 REMARK 470 GLU B 137 CG CD OE1 OE2 REMARK 470 ARG B 138 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 170 CG CD OE1 OE2 REMARK 470 LYS C 6 CG CD CE NZ REMARK 470 LYS C 7 CG CD CE NZ REMARK 470 LYS C 16 CB CG CD CE NZ REMARK 470 LYS C 27 CG CD CE NZ REMARK 470 LYS C 57 CG CD CE NZ REMARK 470 LYS C 112 CG CD CE NZ REMARK 470 ARG C 138 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 152 CG CD CE NZ REMARK 470 LEU C 172 CG CD1 CD2 REMARK 470 GLU C 174 CA C O CB CG CD OE1 REMARK 470 GLU C 174 OE2 REMARK 470 VAL D 3 CG1 CG2 REMARK 470 ASP D 5 CG OD1 OD2 REMARK 470 LYS D 6 CG CD CE NZ REMARK 470 LYS D 7 CG CD CE NZ REMARK 470 GLU D 10 CG CD OE1 OE2 REMARK 470 ARG D 15 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 16 CG CD CE NZ REMARK 470 GLU D 20 CG CD OE1 OE2 REMARK 470 LYS D 27 CG CD CE NZ REMARK 470 ARG D 28 CG CD NE CZ NH1 NH2 REMARK 470 SER D 101 CB OG REMARK 470 GLU D 137 CG CD OE1 OE2 REMARK 470 ARG D 138 CG CD NE CZ NH1 NH2 REMARK 470 LEU D 158 CG CD1 CD2 REMARK 470 LEU D 172 CG CD1 CD2 REMARK 470 GLU D 173 CA C O CB CG CD OE1 REMARK 470 GLU D 173 OE2 REMARK 470 MET E 1 CG SD CE REMARK 470 VAL E 3 CG1 CG2 REMARK 470 ASP E 5 CG OD1 OD2 REMARK 470 LYS E 6 CG CD CE NZ REMARK 470 LYS E 7 CG CD CE NZ REMARK 470 LYS E 16 CG CD CE NZ REMARK 470 GLU E 20 CG CD OE1 OE2 REMARK 470 LYS E 27 CG CD CE NZ REMARK 470 ARG E 28 CG CD NE CZ NH1 NH2 REMARK 470 GLU E 52 CG CD OE1 OE2 REMARK 470 GLU E 56 CG CD OE1 OE2 REMARK 470 LYS E 112 CG CD CE NZ REMARK 470 GLU E 116 CG CD OE1 OE2 REMARK 470 ARG E 138 CG CD NE CZ NH1 NH2 REMARK 470 LYS E 152 CG CD CE NZ REMARK 470 GLU E 173 CA C O CB CG CD OE1 REMARK 470 GLU E 173 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN B 53 O HOH B 2001 2.12 REMARK 500 O HOH E 2007 O HOH E 2014 2.15 REMARK 500 O MET A 159 OG SER A 163 2.16 REMARK 500 NH1 ARG B 90 O SER B 122 2.16 REMARK 500 OG SER C 102 O HIS C 128 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 19 CA - CB - CG ANGL. DEV. = 14.5 DEGREES REMARK 500 PRO E 58 C - N - CA ANGL. DEV. = 10.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 32 -60.44 -90.01 REMARK 500 PHE A 118 -15.04 66.05 REMARK 500 LYS A 152 -130.94 68.14 REMARK 500 ASP B 5 74.48 64.46 REMARK 500 SER B 14 -88.96 -122.92 REMARK 500 LEU B 19 -23.18 77.01 REMARK 500 PHE B 103 -28.52 82.36 REMARK 500 LYS B 108 0.00 -68.93 REMARK 500 PRO B 114 56.14 -69.08 REMARK 500 GLU B 115 3.98 110.78 REMARK 500 GLU B 116 -72.56 -75.75 REMARK 500 GLU C 10 -26.06 71.28 REMARK 500 ARG C 15 -165.58 -73.95 REMARK 500 LYS C 16 26.17 91.89 REMARK 500 GLU C 56 -6.70 65.56 REMARK 500 LYS C 112 -3.37 85.75 REMARK 500 THR C 113 147.95 67.02 REMARK 500 LYS C 117 -62.02 -90.40 REMARK 500 ALA C 126 89.53 65.84 REMARK 500 ARG C 138 -15.77 80.16 REMARK 500 ASP C 140 -16.92 65.18 REMARK 500 ALA C 144 -169.12 -162.07 REMARK 500 GLU C 173 30.08 -86.96 REMARK 500 THR D 33 -67.74 -133.14 REMARK 500 PHE D 34 75.24 50.81 REMARK 500 ASP D 83 -24.55 81.96 REMARK 500 LYS D 109 -21.17 77.75 REMARK 500 ASP D 111 -18.16 82.19 REMARK 500 SER D 122 -20.05 73.24 REMARK 500 ALA D 144 -168.95 -164.77 REMARK 500 THR E 33 85.52 54.24 REMARK 500 LYS E 117 -61.85 -95.34 REMARK 500 ASP E 140 -15.93 64.91 REMARK 500 LEU E 172 -133.94 -116.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY C 78 GLY C 79 136.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH E2014 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH E2016 DISTANCE = 5.90 ANGSTROMS DBREF 4CLC A 1 179 UNP P38276 YBY7_YEAST 1 179 DBREF 4CLC B 1 179 UNP P38276 YBY7_YEAST 1 179 DBREF 4CLC C 1 179 UNP P38276 YBY7_YEAST 1 179 DBREF 4CLC D 1 179 UNP P38276 YBY7_YEAST 1 179 DBREF 4CLC E 1 179 UNP P38276 YBY7_YEAST 1 179 SEQADV 4CLC LEU A 161 UNP P38276 VAL 161 CONFLICT SEQADV 4CLC LYS B 28 UNP P38276 ARG 28 CONFLICT SEQADV 4CLC LYS B 47 UNP P38276 ARG 47 CONFLICT SEQADV 4CLC ASP B 56 UNP P38276 GLU 56 CONFLICT SEQADV 4CLC THR B 140 UNP P38276 ASP 140 CONFLICT SEQADV 4CLC GLN D 21 UNP P38276 GLU 21 CONFLICT SEQADV 4CLC THR E 17 UNP P38276 VAL 17 CONFLICT SEQRES 1 A 179 MET VAL VAL LEU ASP LYS LYS LEU LEU GLU ARG LEU THR SEQRES 2 A 179 SER ARG LYS VAL PRO LEU GLU GLU LEU GLU ASP MET GLU SEQRES 3 A 179 LYS ARG CYS PHE LEU SER THR PHE THR TYR GLN ASP ALA SEQRES 4 A 179 PHE ASP LEU GLY THR TYR ILE ARG ASN ALA VAL LYS GLU SEQRES 5 A 179 ASN PHE PRO GLU LYS PRO VAL ALA ILE ASP ILE SER LEU SEQRES 6 A 179 PRO ASN GLY HIS CYS LEU PHE ARG THR VAL THR TYR GLY SEQRES 7 A 179 GLY SER ALA LEU ASP ASN ASP PHE TRP ILE GLN ARG LYS SEQRES 8 A 179 LYS LYS THR ALA LEU ARG PHE GLY HIS SER SER PHE TYR SEQRES 9 A 179 MET GLY CYS LYS LYS GLY ASP LYS THR PRO GLU GLU LYS SEQRES 10 A 179 PHE PHE VAL ASP SER LYS GLU TYR ALA PHE HIS GLY GLY SEQRES 11 A 179 ALA VAL LEU ILE GLN SER GLU ARG SER ASP TYR PRO TYR SEQRES 12 A 179 ALA CYS LEU THR ILE SER GLY LEU LYS GLN GLU GLU ASP SEQRES 13 A 179 HIS LEU MET ALA LEU SER SER LEU ILE ALA PHE ALA ASN SEQRES 14 A 179 GLU SER LEU GLU GLU ASP LEU ASN LEU ASP SEQRES 1 B 179 MET VAL VAL LEU ASP LYS LYS LEU LEU GLU ARG LEU THR SEQRES 2 B 179 SER ARG LYS VAL PRO LEU GLU GLU LEU GLU ASP MET GLU SEQRES 3 B 179 LYS LYS CYS PHE LEU SER THR PHE THR TYR GLN ASP ALA SEQRES 4 B 179 PHE ASP LEU GLY THR TYR ILE LYS ASN ALA VAL LYS GLU SEQRES 5 B 179 ASN PHE PRO ASP LYS PRO VAL ALA ILE ASP ILE SER LEU SEQRES 6 B 179 PRO ASN GLY HIS CYS LEU PHE ARG THR VAL THR TYR GLY SEQRES 7 B 179 GLY SER ALA LEU ASP ASN ASP PHE TRP ILE GLN ARG LYS SEQRES 8 B 179 LYS LYS THR ALA LEU ARG PHE GLY HIS SER SER PHE TYR SEQRES 9 B 179 MET GLY CYS LYS LYS GLY ASP LYS THR PRO GLU GLU LYS SEQRES 10 B 179 PHE PHE VAL ASP SER LYS GLU TYR ALA PHE HIS GLY GLY SEQRES 11 B 179 ALA VAL LEU ILE GLN SER GLU ARG SER THR TYR PRO TYR SEQRES 12 B 179 ALA CYS LEU THR ILE SER GLY LEU LYS GLN GLU GLU ASP SEQRES 13 B 179 HIS LEU MET ALA VAL SER SER LEU ILE ALA PHE ALA ASN SEQRES 14 B 179 GLU SER LEU GLU GLU ASP LEU ASN LEU ASP SEQRES 1 C 179 MET VAL VAL LEU ASP LYS LYS LEU LEU GLU ARG LEU THR SEQRES 2 C 179 SER ARG LYS VAL PRO LEU GLU GLU LEU GLU ASP MET GLU SEQRES 3 C 179 LYS ARG CYS PHE LEU SER THR PHE THR TYR GLN ASP ALA SEQRES 4 C 179 PHE ASP LEU GLY THR TYR ILE ARG ASN ALA VAL LYS GLU SEQRES 5 C 179 ASN PHE PRO GLU LYS PRO VAL ALA ILE ASP ILE SER LEU SEQRES 6 C 179 PRO ASN GLY HIS CYS LEU PHE ARG THR VAL THR TYR GLY SEQRES 7 C 179 GLY SER ALA LEU ASP ASN ASP PHE TRP ILE GLN ARG LYS SEQRES 8 C 179 LYS LYS THR ALA LEU ARG PHE GLY HIS SER SER PHE TYR SEQRES 9 C 179 MET GLY CYS LYS LYS GLY ASP LYS THR PRO GLU GLU LYS SEQRES 10 C 179 PHE PHE VAL ASP SER LYS GLU TYR ALA PHE HIS GLY GLY SEQRES 11 C 179 ALA VAL LEU ILE GLN SER GLU ARG SER ASP TYR PRO TYR SEQRES 12 C 179 ALA CYS LEU THR ILE SER GLY LEU LYS GLN GLU GLU ASP SEQRES 13 C 179 HIS LEU MET ALA VAL SER SER LEU ILE ALA PHE ALA ASN SEQRES 14 C 179 GLU SER LEU GLU GLU ASP LEU ASN LEU ASP SEQRES 1 D 179 MET VAL VAL LEU ASP LYS LYS LEU LEU GLU ARG LEU THR SEQRES 2 D 179 SER ARG LYS VAL PRO LEU GLU GLN LEU GLU ASP MET GLU SEQRES 3 D 179 LYS ARG CYS PHE LEU SER THR PHE THR TYR GLN ASP ALA SEQRES 4 D 179 PHE ASP LEU GLY THR TYR ILE ARG ASN ALA VAL LYS GLU SEQRES 5 D 179 ASN PHE PRO GLU LYS PRO VAL ALA ILE ASP ILE SER LEU SEQRES 6 D 179 PRO ASN GLY HIS CYS LEU PHE ARG THR VAL THR TYR GLY SEQRES 7 D 179 GLY SER ALA LEU ASP ASN ASP PHE TRP ILE GLN ARG LYS SEQRES 8 D 179 LYS LYS THR ALA LEU ARG PHE GLY HIS SER SER PHE TYR SEQRES 9 D 179 MET GLY CYS LYS LYS GLY ASP LYS THR PRO GLU GLU LYS SEQRES 10 D 179 PHE PHE VAL ASP SER LYS GLU TYR ALA PHE HIS GLY GLY SEQRES 11 D 179 ALA VAL LEU ILE GLN SER GLU ARG SER ASP TYR PRO TYR SEQRES 12 D 179 ALA CYS LEU THR ILE SER GLY LEU LYS GLN GLU GLU ASP SEQRES 13 D 179 HIS LEU MET ALA VAL SER SER LEU ILE ALA PHE ALA ASN SEQRES 14 D 179 GLU SER LEU GLU GLU ASP LEU ASN LEU ASP SEQRES 1 E 179 MET VAL VAL LEU ASP LYS LYS LEU LEU GLU ARG LEU THR SEQRES 2 E 179 SER ARG LYS THR PRO LEU GLU GLU LEU GLU ASP MET GLU SEQRES 3 E 179 LYS ARG CYS PHE LEU SER THR PHE THR TYR GLN ASP ALA SEQRES 4 E 179 PHE ASP LEU GLY THR TYR ILE ARG ASN ALA VAL LYS GLU SEQRES 5 E 179 ASN PHE PRO GLU LYS PRO VAL ALA ILE ASP ILE SER LEU SEQRES 6 E 179 PRO ASN GLY HIS CYS LEU PHE ARG THR VAL THR TYR GLY SEQRES 7 E 179 GLY SER ALA LEU ASP ASN ASP PHE TRP ILE GLN ARG LYS SEQRES 8 E 179 LYS LYS THR ALA LEU ARG PHE GLY HIS SER SER PHE TYR SEQRES 9 E 179 MET GLY CYS LYS LYS GLY ASP LYS THR PRO GLU GLU LYS SEQRES 10 E 179 PHE PHE VAL ASP SER LYS GLU TYR ALA PHE HIS GLY GLY SEQRES 11 E 179 ALA VAL LEU ILE GLN SER GLU ARG SER ASP TYR PRO TYR SEQRES 12 E 179 ALA CYS LEU THR ILE SER GLY LEU LYS GLN GLU GLU ASP SEQRES 13 E 179 HIS LEU MET ALA VAL SER SER LEU ILE ALA PHE ALA ASN SEQRES 14 E 179 GLU SER LEU GLU GLU ASP LEU ASN LEU ASP FORMUL 6 HOH *64(H2 O) HELIX 1 1 ASP A 5 ARG A 15 1 11 HELIX 2 2 PRO A 18 ARG A 28 1 11 HELIX 3 3 THR A 35 PHE A 54 1 20 HELIX 4 4 ALA A 81 GLY A 99 1 19 HELIX 5 5 SER A 101 GLY A 110 1 10 HELIX 6 6 GLN A 153 ASN A 169 1 17 HELIX 7 7 ASP B 5 SER B 14 1 10 HELIX 8 8 LEU B 19 LYS B 28 1 10 HELIX 9 9 THR B 35 PHE B 54 1 20 HELIX 10 10 ALA B 81 PHE B 98 1 18 HELIX 11 11 PHE B 103 LYS B 108 1 6 HELIX 12 12 LYS B 152 GLU B 170 1 19 HELIX 13 13 PRO C 18 LYS C 27 1 10 HELIX 14 14 THR C 35 PHE C 54 1 20 HELIX 15 15 LEU C 82 GLY C 99 1 18 HELIX 16 16 SER C 101 GLY C 110 1 10 HELIX 17 17 THR C 113 PHE C 119 1 7 HELIX 18 18 ASP C 121 ALA C 126 1 6 HELIX 19 19 LYS C 152 ASN C 169 1 18 HELIX 20 20 ASP D 5 SER D 14 1 10 HELIX 21 21 PRO D 18 LYS D 27 1 10 HELIX 22 22 THR D 35 PHE D 54 1 20 HELIX 23 23 ASP D 83 GLY D 99 1 17 HELIX 24 24 SER D 101 LYS D 108 1 8 HELIX 25 25 THR D 113 PHE D 118 1 6 HELIX 26 26 LYS D 152 ASN D 169 1 18 HELIX 27 27 ASP E 5 SER E 14 1 10 HELIX 28 28 PRO E 18 ARG E 28 1 11 HELIX 29 29 THR E 35 PHE E 54 1 20 HELIX 30 30 ALA E 81 PHE E 98 1 18 HELIX 31 31 SER E 101 GLY E 110 1 10 HELIX 32 32 THR E 113 PHE E 118 1 6 HELIX 33 33 LYS E 152 ASN E 169 1 18 SHEET 1 AA10 PHE A 30 LEU A 31 0 SHEET 2 AA10 ALA A 131 SER A 136 1 O GLN A 135 N LEU A 31 SHEET 3 AA10 ALA A 144 SER A 149 -1 O ALA A 144 N ILE A 134 SHEET 4 AA10 ALA A 60 SER A 64 -1 O ALA A 60 N SER A 149 SHEET 5 AA10 CYS A 70 VAL A 75 -1 N LEU A 71 O ILE A 63 SHEET 6 AA10 CYS B 70 VAL B 75 -1 O LEU B 71 N VAL A 75 SHEET 7 AA10 ALA B 60 SER B 64 -1 O ILE B 61 N THR B 74 SHEET 8 AA10 SER B 139 SER B 149 -1 O CYS B 145 N SER B 64 SHEET 9 AA10 ALA B 131 SER B 136 -1 O VAL B 132 N LEU B 146 SHEET 10 AA10 PHE B 30 LEU B 31 1 N LEU B 31 O GLN B 135 SHEET 1 CA 5 PHE C 30 LEU C 31 0 SHEET 2 CA 5 ALA C 131 SER C 136 1 O GLN C 135 N LEU C 31 SHEET 3 CA 5 ALA C 144 SER C 149 -1 O ALA C 144 N ILE C 134 SHEET 4 CA 5 ALA C 60 SER C 64 -1 O ALA C 60 N SER C 149 SHEET 5 CA 5 CYS C 70 VAL C 75 -1 N LEU C 71 O ILE C 63 SHEET 1 DA 5 PHE D 30 LEU D 31 0 SHEET 2 DA 5 ALA D 131 SER D 136 1 O GLN D 135 N LEU D 31 SHEET 3 DA 5 ALA D 144 SER D 149 -1 O ALA D 144 N ILE D 134 SHEET 4 DA 5 ALA D 60 SER D 64 -1 O ALA D 60 N SER D 149 SHEET 5 DA 5 CYS D 70 VAL D 75 -1 N LEU D 71 O ILE D 63 SHEET 1 EA 5 PHE E 30 LEU E 31 0 SHEET 2 EA 5 ALA E 131 SER E 136 1 O GLN E 135 N LEU E 31 SHEET 3 EA 5 ALA E 144 SER E 149 -1 O ALA E 144 N ILE E 134 SHEET 4 EA 5 ALA E 60 SER E 64 -1 O ALA E 60 N SER E 149 SHEET 5 EA 5 CYS E 70 VAL E 75 -1 N LEU E 71 O ILE E 63 CRYST1 135.254 135.254 121.500 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007393 0.004269 0.000000 0.00000 SCALE2 0.000000 0.008537 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008230 0.00000