HEADER TRANSFERASE 22-JAN-14 4CNF TITLE CRYSTAL STRUCTURE OF SULFOLOBUS ACIDOCALDARIUS TRMJ COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPOU RRNA METHYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TRNA METHYLTRANSFERASE, TRMJ; COMPND 5 EC: 2.1.1.200; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS ACIDOCALDARIUS; SOURCE 3 ORGANISM_TAXID: 2285; SOURCE 4 ATCC: 33909; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET28B KEYWDS TRANSFERASE, TRNA 2'-O-METHYLTRANSFERASE, SPOUT EXPDTA X-RAY DIFFRACTION AUTHOR B.VAN LAER,J.SOMME,M.ROOVERS,J.STEYAERT,L.DROOGMANS,W.VERSEES REVDAT 3 20-DEC-23 4CNF 1 REMARK REVDAT 2 30-JUL-14 4CNF 1 JRNL REVDAT 1 02-JUL-14 4CNF 0 JRNL AUTH J.SOMME,B.VAN LAER,M.ROOVERS,J.STEYAERT,W.VERSEES, JRNL AUTH 2 L.DROOGMANS JRNL TITL CHARACTERIZATION OF TWO HOMOLOGOUS 2'-O-METHYLTRANSFERASES JRNL TITL 2 SHOWING DIFFERENT SPECIFICITIES FOR THEIR TRNA SUBSTRATES. JRNL REF RNA V. 20 1257 2014 JRNL REFN ISSN 1355-8382 JRNL PMID 24951554 JRNL DOI 10.1261/RNA.044503.114 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 60181 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3069 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4275 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.3280 REMARK 3 BIN FREE R VALUE SET COUNT : 205 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2455 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 132 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.20000 REMARK 3 B22 (A**2) : -0.34000 REMARK 3 B33 (A**2) : 0.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.061 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.058 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2599 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2616 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3511 ; 1.611 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6011 ; 3.751 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 314 ; 6.202 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;34.671 ;23.860 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 477 ;13.496 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;12.570 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 407 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2845 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 569 ; 0.029 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1250 ; 3.407 ; 1.687 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1249 ; 3.111 ; 1.684 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1566 ; 3.563 ; 2.525 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1344 ; 5.305 ; 2.276 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5203 ;12.622 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 42 ;17.393 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5261 ;10.044 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4CNF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1290059540. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63289 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 43.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.40 REMARK 200 R MERGE (I) : 0.01000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 14.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4CND REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M KBR, 0.1M NA-ACETATE PH 5.5, 20 REMARK 280 % PEG2000MME REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 22.56900 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.15400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 22.56900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.15400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 ILE A 83 REMARK 465 LYS A 84 REMARK 465 ASP A 158 REMARK 465 ASN A 159 REMARK 465 LYS A 160 REMARK 465 VAL A 161 REMARK 465 PRO A 162 REMARK 465 THR A 163 REMARK 465 VAL A 164 REMARK 465 SER A 165 REMARK 465 SER A 166 REMARK 465 GLU A 167 REMARK 465 PRO A 168 REMARK 465 ILE A 169 REMARK 465 LYS A 170 REMARK 465 LEU A 171 REMARK 465 ILE A 172 REMARK 465 ASP A 173 REMARK 465 ASP A 174 REMARK 465 TYR A 175 REMARK 465 SER A 176 REMARK 465 LYS A 177 REMARK 465 LYS A 178 REMARK 465 ILE A 179 REMARK 465 THR A 180 REMARK 465 ASP A 181 REMARK 465 ILE A 182 REMARK 465 LEU A 183 REMARK 465 VAL A 184 REMARK 465 ASN A 185 REMARK 465 LYS A 186 REMARK 465 GLU A 187 REMARK 465 ALA A 188 REMARK 465 THR A 189 REMARK 465 LYS A 190 REMARK 465 SER A 191 REMARK 465 MET A 192 REMARK 465 TYR A 193 REMARK 465 LEU A 194 REMARK 465 VAL A 195 REMARK 465 LEU A 196 REMARK 465 LYS A 197 REMARK 465 ARG A 198 REMARK 465 VAL A 199 REMARK 465 LEU A 200 REMARK 465 ILE A 201 REMARK 465 LYS A 202 REMARK 465 GLY A 203 REMARK 465 ILE A 204 REMARK 465 GLU A 205 REMARK 465 ASP A 206 REMARK 465 ASN A 207 REMARK 465 GLU A 208 REMARK 465 GLU A 209 REMARK 465 ALA A 210 REMARK 465 MET A 211 REMARK 465 THR A 212 REMARK 465 ILE A 213 REMARK 465 VAL A 214 REMARK 465 ARG A 215 REMARK 465 ILE A 216 REMARK 465 LEU A 217 REMARK 465 ARG A 218 REMARK 465 LYS A 219 REMARK 465 ILE A 220 REMARK 465 TYR A 221 REMARK 465 VAL A 222 REMARK 465 ARG A 223 REMARK 465 LEU A 224 REMARK 465 ALA A 225 REMARK 465 LYS A 226 REMARK 465 LYS A 227 REMARK 465 GLU A 228 REMARK 465 ASN A 229 REMARK 465 GLU A 230 REMARK 465 SER A 231 REMARK 465 ASP A 232 REMARK 465 LYS A 233 REMARK 465 LEU A 234 REMARK 465 LEU A 235 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 LYS B 84 REMARK 465 GLY B 85 REMARK 465 ASP B 86 REMARK 465 LEU B 87 REMARK 465 LEU B 88 REMARK 465 ARG B 157 REMARK 465 ASP B 158 REMARK 465 ASN B 159 REMARK 465 LYS B 160 REMARK 465 VAL B 161 REMARK 465 PRO B 162 REMARK 465 THR B 163 REMARK 465 VAL B 164 REMARK 465 SER B 165 REMARK 465 SER B 166 REMARK 465 GLU B 167 REMARK 465 PRO B 168 REMARK 465 ILE B 169 REMARK 465 LYS B 170 REMARK 465 LEU B 171 REMARK 465 ILE B 172 REMARK 465 ASP B 173 REMARK 465 ASP B 174 REMARK 465 TYR B 175 REMARK 465 SER B 176 REMARK 465 LYS B 177 REMARK 465 LYS B 178 REMARK 465 ILE B 179 REMARK 465 THR B 180 REMARK 465 ASP B 181 REMARK 465 ILE B 182 REMARK 465 LEU B 183 REMARK 465 VAL B 184 REMARK 465 ASN B 185 REMARK 465 LYS B 186 REMARK 465 GLU B 187 REMARK 465 ALA B 188 REMARK 465 THR B 189 REMARK 465 LYS B 190 REMARK 465 SER B 191 REMARK 465 MET B 192 REMARK 465 TYR B 193 REMARK 465 LEU B 194 REMARK 465 VAL B 195 REMARK 465 LEU B 196 REMARK 465 LYS B 197 REMARK 465 ARG B 198 REMARK 465 VAL B 199 REMARK 465 LEU B 200 REMARK 465 ILE B 201 REMARK 465 LYS B 202 REMARK 465 GLY B 203 REMARK 465 ILE B 204 REMARK 465 GLU B 205 REMARK 465 ASP B 206 REMARK 465 ASN B 207 REMARK 465 GLU B 208 REMARK 465 GLU B 209 REMARK 465 ALA B 210 REMARK 465 MET B 211 REMARK 465 THR B 212 REMARK 465 ILE B 213 REMARK 465 VAL B 214 REMARK 465 ARG B 215 REMARK 465 ILE B 216 REMARK 465 LEU B 217 REMARK 465 ARG B 218 REMARK 465 LYS B 219 REMARK 465 ILE B 220 REMARK 465 TYR B 221 REMARK 465 VAL B 222 REMARK 465 ARG B 223 REMARK 465 LEU B 224 REMARK 465 ALA B 225 REMARK 465 LYS B 226 REMARK 465 LYS B 227 REMARK 465 GLU B 228 REMARK 465 ASN B 229 REMARK 465 GLU B 230 REMARK 465 SER B 231 REMARK 465 ASP B 232 REMARK 465 LYS B 233 REMARK 465 LEU B 234 REMARK 465 LEU B 235 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 113 CG GLU B 113 CD 0.094 REMARK 500 GLU B 113 CD GLU B 113 OE1 -0.077 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU B 113 OE1 - CD - OE2 ANGL. DEV. = -8.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 137 75.61 -158.54 REMARK 500 ALA B 48 -130.14 54.38 REMARK 500 SER B 78 -158.16 -141.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MTA A 1400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1200 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CND RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF E.COLI TRMJ REMARK 900 RELATED ID: 4CNE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF E.COLI TRMJ IN COMPLEX WITH S- ADENOSYL-L- REMARK 900 HOMOCYSTEINE REMARK 900 RELATED ID: 4CNG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SULFOLOBUS ACIDOCALDARIUS TRMJ IN COMPLEX WITH REMARK 900 S-ADENSOSYLHOMOCYSTEINE DBREF 4CNF A 1 235 UNP Q4JB16 Q4JB16_SULAC 1 235 DBREF 4CNF B 1 235 UNP Q4JB16 Q4JB16_SULAC 1 235 SEQADV 4CNF MET A -19 UNP Q4JB16 EXPRESSION TAG SEQADV 4CNF GLY A -18 UNP Q4JB16 EXPRESSION TAG SEQADV 4CNF SER A -17 UNP Q4JB16 EXPRESSION TAG SEQADV 4CNF SER A -16 UNP Q4JB16 EXPRESSION TAG SEQADV 4CNF HIS A -15 UNP Q4JB16 EXPRESSION TAG SEQADV 4CNF HIS A -14 UNP Q4JB16 EXPRESSION TAG SEQADV 4CNF HIS A -13 UNP Q4JB16 EXPRESSION TAG SEQADV 4CNF HIS A -12 UNP Q4JB16 EXPRESSION TAG SEQADV 4CNF HIS A -11 UNP Q4JB16 EXPRESSION TAG SEQADV 4CNF HIS A -10 UNP Q4JB16 EXPRESSION TAG SEQADV 4CNF SER A -9 UNP Q4JB16 EXPRESSION TAG SEQADV 4CNF SER A -8 UNP Q4JB16 EXPRESSION TAG SEQADV 4CNF GLY A -7 UNP Q4JB16 EXPRESSION TAG SEQADV 4CNF LEU A -6 UNP Q4JB16 EXPRESSION TAG SEQADV 4CNF VAL A -5 UNP Q4JB16 EXPRESSION TAG SEQADV 4CNF PRO A -4 UNP Q4JB16 EXPRESSION TAG SEQADV 4CNF ARG A -3 UNP Q4JB16 EXPRESSION TAG SEQADV 4CNF GLY A -2 UNP Q4JB16 EXPRESSION TAG SEQADV 4CNF SER A -1 UNP Q4JB16 EXPRESSION TAG SEQADV 4CNF HIS A 0 UNP Q4JB16 EXPRESSION TAG SEQADV 4CNF ALA A 38 UNP Q4JB16 CYS 38 ENGINEERED MUTATION SEQADV 4CNF MET B -19 UNP Q4JB16 EXPRESSION TAG SEQADV 4CNF GLY B -18 UNP Q4JB16 EXPRESSION TAG SEQADV 4CNF SER B -17 UNP Q4JB16 EXPRESSION TAG SEQADV 4CNF SER B -16 UNP Q4JB16 EXPRESSION TAG SEQADV 4CNF HIS B -15 UNP Q4JB16 EXPRESSION TAG SEQADV 4CNF HIS B -14 UNP Q4JB16 EXPRESSION TAG SEQADV 4CNF HIS B -13 UNP Q4JB16 EXPRESSION TAG SEQADV 4CNF HIS B -12 UNP Q4JB16 EXPRESSION TAG SEQADV 4CNF HIS B -11 UNP Q4JB16 EXPRESSION TAG SEQADV 4CNF HIS B -10 UNP Q4JB16 EXPRESSION TAG SEQADV 4CNF SER B -9 UNP Q4JB16 EXPRESSION TAG SEQADV 4CNF SER B -8 UNP Q4JB16 EXPRESSION TAG SEQADV 4CNF GLY B -7 UNP Q4JB16 EXPRESSION TAG SEQADV 4CNF LEU B -6 UNP Q4JB16 EXPRESSION TAG SEQADV 4CNF VAL B -5 UNP Q4JB16 EXPRESSION TAG SEQADV 4CNF PRO B -4 UNP Q4JB16 EXPRESSION TAG SEQADV 4CNF ARG B -3 UNP Q4JB16 EXPRESSION TAG SEQADV 4CNF GLY B -2 UNP Q4JB16 EXPRESSION TAG SEQADV 4CNF SER B -1 UNP Q4JB16 EXPRESSION TAG SEQADV 4CNF HIS B 0 UNP Q4JB16 EXPRESSION TAG SEQADV 4CNF ALA B 38 UNP Q4JB16 CYS 38 ENGINEERED MUTATION SEQRES 1 A 255 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 255 LEU VAL PRO ARG GLY SER HIS MET THR ILE ARG LEU VAL SEQRES 3 A 255 ILE VAL GLU PRO GLU GLY ALA TYR ASN LEU GLY PHE ILE SEQRES 4 A 255 ALA ARG LEU VAL LYS ASN PHE LEU ILE ASP GLU PHE TYR SEQRES 5 A 255 VAL VAL ASN PRO LYS ALA ASP ILE ASN GLU ALA ILE LYS SEQRES 6 A 255 PHE SER ALA LYS GLY SER GLU VAL ILE GLU LYS MET MET SEQRES 7 A 255 LYS ILE THR ASN ASN PHE ASP ASP ALA ILE ARG ASP VAL SEQRES 8 A 255 ASP LEU LYS ILE ALA THR SER SER ILE ALA ASP ILE LYS SEQRES 9 A 255 GLY ASP LEU LEU ARG LYS SER ILE ARG PRO ILE ASP LEU SEQRES 10 A 255 GLU ARG LEU ILE LYS ASP LYS LYS VAL ALA PHE ILE PHE SEQRES 11 A 255 GLY ARG GLU SER VAL GLY LEU THR ARG GLU GLU ILE ALA SEQRES 12 A 255 LYS SER ASP PHE LEU LEU PHE ILE PRO ALA ASN PRO GLU SEQRES 13 A 255 TYR PRO VAL LEU ASN LEU SER HIS ALA VAL GLY ILE VAL SEQRES 14 A 255 LEU TYR GLU LEU TRP ARG ASN ARG ASP ASN LYS VAL PRO SEQRES 15 A 255 THR VAL SER SER GLU PRO ILE LYS LEU ILE ASP ASP TYR SEQRES 16 A 255 SER LYS LYS ILE THR ASP ILE LEU VAL ASN LYS GLU ALA SEQRES 17 A 255 THR LYS SER MET TYR LEU VAL LEU LYS ARG VAL LEU ILE SEQRES 18 A 255 LYS GLY ILE GLU ASP ASN GLU GLU ALA MET THR ILE VAL SEQRES 19 A 255 ARG ILE LEU ARG LYS ILE TYR VAL ARG LEU ALA LYS LYS SEQRES 20 A 255 GLU ASN GLU SER ASP LYS LEU LEU SEQRES 1 B 255 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 255 LEU VAL PRO ARG GLY SER HIS MET THR ILE ARG LEU VAL SEQRES 3 B 255 ILE VAL GLU PRO GLU GLY ALA TYR ASN LEU GLY PHE ILE SEQRES 4 B 255 ALA ARG LEU VAL LYS ASN PHE LEU ILE ASP GLU PHE TYR SEQRES 5 B 255 VAL VAL ASN PRO LYS ALA ASP ILE ASN GLU ALA ILE LYS SEQRES 6 B 255 PHE SER ALA LYS GLY SER GLU VAL ILE GLU LYS MET MET SEQRES 7 B 255 LYS ILE THR ASN ASN PHE ASP ASP ALA ILE ARG ASP VAL SEQRES 8 B 255 ASP LEU LYS ILE ALA THR SER SER ILE ALA ASP ILE LYS SEQRES 9 B 255 GLY ASP LEU LEU ARG LYS SER ILE ARG PRO ILE ASP LEU SEQRES 10 B 255 GLU ARG LEU ILE LYS ASP LYS LYS VAL ALA PHE ILE PHE SEQRES 11 B 255 GLY ARG GLU SER VAL GLY LEU THR ARG GLU GLU ILE ALA SEQRES 12 B 255 LYS SER ASP PHE LEU LEU PHE ILE PRO ALA ASN PRO GLU SEQRES 13 B 255 TYR PRO VAL LEU ASN LEU SER HIS ALA VAL GLY ILE VAL SEQRES 14 B 255 LEU TYR GLU LEU TRP ARG ASN ARG ASP ASN LYS VAL PRO SEQRES 15 B 255 THR VAL SER SER GLU PRO ILE LYS LEU ILE ASP ASP TYR SEQRES 16 B 255 SER LYS LYS ILE THR ASP ILE LEU VAL ASN LYS GLU ALA SEQRES 17 B 255 THR LYS SER MET TYR LEU VAL LEU LYS ARG VAL LEU ILE SEQRES 18 B 255 LYS GLY ILE GLU ASP ASN GLU GLU ALA MET THR ILE VAL SEQRES 19 B 255 ARG ILE LEU ARG LYS ILE TYR VAL ARG LEU ALA LYS LYS SEQRES 20 B 255 GLU ASN GLU SER ASP LYS LEU LEU HET GOL A1200 6 HET PEG A1201 7 HET MTA A1400 20 HET GOL B1200 6 HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM MTA 5'-DEOXY-5'-METHYLTHIOADENOSINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 4 PEG C4 H10 O3 FORMUL 5 MTA C11 H15 N5 O3 S FORMUL 7 HOH *132(H2 O) HELIX 1 1 GLY A 12 PHE A 26 1 15 HELIX 2 2 ASP A 39 LYS A 45 1 7 HELIX 3 3 GLU A 52 MET A 58 1 7 HELIX 4 4 ASN A 63 ILE A 68 1 6 HELIX 5 5 GLY A 85 LYS A 90 1 6 HELIX 6 6 ARG A 93 ILE A 95 5 3 HELIX 7 7 ASP A 96 LYS A 102 1 7 HELIX 8 8 THR A 118 LYS A 124 1 7 HELIX 9 9 ASN A 141 LEU A 153 1 13 HELIX 10 10 GLY B 12 PHE B 26 1 15 HELIX 11 11 ASP B 39 LYS B 45 1 7 HELIX 12 12 PHE B 46 LYS B 49 5 4 HELIX 13 13 GLY B 50 MET B 57 1 8 HELIX 14 14 PHE B 64 ILE B 68 5 5 HELIX 15 15 ARG B 93 ILE B 95 5 3 HELIX 16 16 ASP B 96 LYS B 102 1 7 HELIX 17 17 THR B 118 SER B 125 1 8 HELIX 18 18 ASN B 141 ASN B 156 1 16 SHEET 1 AA 7 LYS A 59 THR A 61 0 SHEET 2 AA 7 GLU A 30 VAL A 34 1 O PHE A 31 N LYS A 59 SHEET 3 AA 7 THR A 2 VAL A 8 1 O ILE A 3 N GLU A 30 SHEET 4 AA 7 LYS A 105 PHE A 110 1 O VAL A 106 N ARG A 4 SHEET 5 AA 7 LEU A 73 THR A 77 1 O LEU A 73 N ALA A 107 SHEET 6 AA 7 PHE A 127 LEU A 129 1 O PHE A 127 N ALA A 76 SHEET 7 AA 7 SER A 91 ILE A 92 1 N ILE A 92 O LEU A 128 SHEET 1 BA 6 LYS B 59 THR B 61 0 SHEET 2 BA 6 GLU B 30 VAL B 34 1 O PHE B 31 N LYS B 59 SHEET 3 BA 6 ILE B 3 VAL B 8 1 O ILE B 3 N GLU B 30 SHEET 4 BA 6 VAL B 106 PHE B 110 1 O VAL B 106 N ARG B 4 SHEET 5 BA 6 LEU B 73 THR B 77 1 O LEU B 73 N ALA B 107 SHEET 6 BA 6 PHE B 127 LEU B 129 1 O PHE B 127 N ALA B 76 SITE 1 AC1 10 PHE A 64 THR A 118 GLU A 121 HOH A2042 SITE 2 AC1 10 HOH A2055 HOH A2062 LYS B 74 ALA B 123 SITE 3 AC1 10 LYS B 124 ASP B 126 SITE 1 AC2 6 THR A 77 SER A 78 SER A 79 GLY A 116 SITE 2 AC2 6 LEU A 117 MTA A1400 SITE 1 AC3 15 THR A 77 SER A 78 SER A 79 PHE A 110 SITE 2 AC3 15 GLY A 111 ARG A 112 GLY A 116 LEU A 129 SITE 3 AC3 15 ILE A 131 PRO A 138 LEU A 140 ALA A 145 SITE 4 AC3 15 PEG A1201 HOH A2067 HOH B2012 SITE 1 AC4 6 ILE B 80 PHE B 130 PRO B 132 ALA B 133 SITE 2 AC4 6 PRO B 135 HOH B2040 CRYST1 45.138 53.702 130.308 90.00 90.00 90.00 P 21 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022154 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018621 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007674 0.00000