HEADER LYASE 23-JAN-14 4CNO TITLE STRUCTURE OF THE SALMONELLA TYPHI TYPE I DEHYDROQUINASE INHIBITED BY A TITLE 2 3-DEHYDROQUINIC ACID DERIVATIVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-DEHYDROQUINATE DEHYDRATASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: 3-DEHYDROQUINASE, TYPE I DHQASE; COMPND 5 EC: 4.2.1.10; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 TYPHI; SOURCE 4 ORGANISM_TAXID: 90370; SOURCE 5 ATCC: 19430; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS LYASE, INHIBITOR, PROTEIN BINDING, SHIKIMIS ACID PATHWAY, SUBSTRATE KEYWDS 2 SPECIFICITY EXPDTA X-RAY DIFFRACTION AUTHOR J.M.OTERO,A.L.LLAMAS-SAIZ,M.MANEIRO,A.PEON,E.LENCE,H.LAMB, AUTHOR 2 A.R.HAWKINS,C.GONZALEZ-BELLO,M.J.VAN RAAIJ REVDAT 3 20-DEC-23 4CNO 1 REMARK REVDAT 2 07-FEB-18 4CNO 1 JRNL REVDAT 1 08-OCT-14 4CNO 0 JRNL AUTH M.MANEIRO,A.PEON,E.LENCE,J.M.OTERO,M.J.VAN RAAIJ,P.THOMPSON, JRNL AUTH 2 A.R.HAWKINS,C.GONZALEZ-BELLO JRNL TITL INSIGHTS INTO SUBSTRATE BINDING AND CATALYSIS IN BACTERIAL JRNL TITL 2 TYPE I DEHYDROQUINASE. JRNL REF BIOCHEM. J. V. 462 415 2014 JRNL REFN ESSN 1470-8728 JRNL PMID 24957267 JRNL DOI 10.1042/BJ20140614 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 150.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 88.3 REMARK 3 NUMBER OF REFLECTIONS : 124425 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 6690 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.58 REMARK 3 REFLECTION IN BIN (WORKING SET) : 10314 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 50.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.3020 REMARK 3 BIN FREE R VALUE SET COUNT : 486 REMARK 3 BIN FREE R VALUE : 0.3530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7617 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 297 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -12.53000 REMARK 3 B22 (A**2) : 16.29000 REMARK 3 B33 (A**2) : -3.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.42000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.018 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.018 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.207 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7971 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 7881 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10835 ; 1.276 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 18115 ; 0.760 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1022 ; 5.827 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 334 ;38.513 ;24.102 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1434 ;13.953 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 51 ;17.205 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1307 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8897 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1734 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1992 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 7711 ; 0.165 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3872 ; 0.173 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 4946 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 184 ; 0.139 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 4 ; 0.122 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 66 ; 0.236 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 171 ; 0.132 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.166 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 7971 ; 1.099 ; 2.072 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 7881 ; 0.231 ; 2.105 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 10815 ; 1.721 ; 3.085 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 14408 ; 2.487 ;20.537 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 18115 ; 0.841 ; 3.145 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.522 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -H, -K, H+L REMARK 3 TWIN FRACTION : 0.478 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES ARE REFINED INDIVIDUALLY. GAP BY DISORDERED REMARK 3 REGION BETWEEN LYS-229 AND PRO-234 IN CHAINS A, B, C AND D. REMARK 4 REMARK 4 4CNO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1290059421. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97922 REMARK 200 MONOCHROMATOR : CHANNEL-CUT DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : PLANE-ELLIPSOIDAL MIRRORS (SI, REMARK 200 RH, IR) REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 131130 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 150.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.4 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 50.7 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1QFE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 32% PEG 4000, 0.1 M NA-CITRATE PH 5.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 19.70300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 39.31309 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 19.70300 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -150.06598 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 78.67000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -19.70300 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 78.67000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 19.70300 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 39.31309 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -19.70300 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -150.06598 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 230 REMARK 465 ALA A 231 REMARK 465 SER A 232 REMARK 465 ALA A 233 REMARK 465 MET B 1 REMARK 465 GLN B 230 REMARK 465 ALA B 231 REMARK 465 SER B 232 REMARK 465 ALA B 233 REMARK 465 GLN C 230 REMARK 465 ALA C 231 REMARK 465 SER C 232 REMARK 465 ALA C 233 REMARK 465 MET D 1 REMARK 465 GLN D 230 REMARK 465 ALA D 231 REMARK 465 SER D 232 REMARK 465 ALA D 233 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET C 1 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP D 26 N ASN D 28 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 7 -121.96 58.95 REMARK 500 ASP A 54 37.43 -91.28 REMARK 500 PHE A 118 43.02 -94.38 REMARK 500 ALA A 206 -175.05 66.12 REMARK 500 LYS B 7 -126.26 57.88 REMARK 500 ALA B 206 175.46 71.93 REMARK 500 LYS C 7 -100.52 62.12 REMARK 500 ASP C 54 41.73 -90.14 REMARK 500 TYR C 195 -44.59 -135.14 REMARK 500 ALA C 206 -179.15 69.36 REMARK 500 ASN D 8 -2.92 74.62 REMARK 500 TYR D 195 -43.55 -132.37 REMARK 500 ALA D 206 -177.23 69.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 9PY A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 9PY B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 9PY C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 9PY D 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CNN RELATED DB: PDB REMARK 900 HIGH RESOLUTION STRUCTURE OF SALMONELLA TYPHI TYPE I DEHYDROQUINASE REMARK 900 RELATED ID: 4CNP RELATED DB: PDB REMARK 900 STRUCTURE OF THE SALMONELLA TYPHI TYPE I DEHYDROQUINASE INHIBITED REMARK 900 BY A 3-EPIQUINIC ACID DERIVATIVE DBREF 4CNO A 1 252 UNP P24670 AROD_SALTI 1 252 DBREF 4CNO B 1 252 UNP P24670 AROD_SALTI 1 252 DBREF 4CNO C 1 252 UNP P24670 AROD_SALTI 1 252 DBREF 4CNO D 1 252 UNP P24670 AROD_SALTI 1 252 SEQRES 1 A 252 MET LYS THR VAL THR VAL LYS ASN LEU ILE ILE GLY GLU SEQRES 2 A 252 GLY MET PRO LYS ILE ILE VAL SER LEU MET GLY ARG ASP SEQRES 3 A 252 ILE ASN SER VAL LYS ALA GLU ALA LEU ALA TYR ARG GLU SEQRES 4 A 252 ALA THR PHE ASP ILE LEU GLU TRP ARG VAL ASP HIS PHE SEQRES 5 A 252 MET ASP ILE ALA SER THR GLN SER VAL LEU THR ALA ALA SEQRES 6 A 252 ARG VAL ILE ARG ASP ALA MET PRO ASP ILE PRO LEU LEU SEQRES 7 A 252 PHE THR PHE ARG SER ALA LYS GLU GLY GLY GLU GLN THR SEQRES 8 A 252 ILE THR THR GLN HIS TYR LEU THR LEU ASN ARG ALA ALA SEQRES 9 A 252 ILE ASP SER GLY LEU VAL ASP MET ILE ASP LEU GLU LEU SEQRES 10 A 252 PHE THR GLY ASP ALA ASP VAL LYS ALA THR VAL ASP TYR SEQRES 11 A 252 ALA HIS ALA HIS ASN VAL TYR VAL VAL MET SER ASN HIS SEQRES 12 A 252 ASP PHE HIS GLN THR PRO SER ALA GLU GLU MET VAL LEU SEQRES 13 A 252 ARG LEU ARG LYS MET GLN ALA LEU GLY ALA ASP ILE PRO SEQRES 14 A 252 LYS ILE ALA VAL MET PRO GLN SER LYS HIS ASP VAL LEU SEQRES 15 A 252 THR LEU LEU THR ALA THR LEU GLU MET GLN GLN HIS TYR SEQRES 16 A 252 ALA ASP ARG PRO VAL ILE THR MET SER MET ALA LYS GLU SEQRES 17 A 252 GLY VAL ILE SER ARG LEU ALA GLY GLU VAL PHE GLY SER SEQRES 18 A 252 ALA ALA THR PHE GLY ALA VAL LYS GLN ALA SER ALA PRO SEQRES 19 A 252 GLY GLN ILE ALA VAL ASN ASP LEU ARG SER VAL LEU MET SEQRES 20 A 252 ILE LEU HIS ASN ALA SEQRES 1 B 252 MET LYS THR VAL THR VAL LYS ASN LEU ILE ILE GLY GLU SEQRES 2 B 252 GLY MET PRO LYS ILE ILE VAL SER LEU MET GLY ARG ASP SEQRES 3 B 252 ILE ASN SER VAL LYS ALA GLU ALA LEU ALA TYR ARG GLU SEQRES 4 B 252 ALA THR PHE ASP ILE LEU GLU TRP ARG VAL ASP HIS PHE SEQRES 5 B 252 MET ASP ILE ALA SER THR GLN SER VAL LEU THR ALA ALA SEQRES 6 B 252 ARG VAL ILE ARG ASP ALA MET PRO ASP ILE PRO LEU LEU SEQRES 7 B 252 PHE THR PHE ARG SER ALA LYS GLU GLY GLY GLU GLN THR SEQRES 8 B 252 ILE THR THR GLN HIS TYR LEU THR LEU ASN ARG ALA ALA SEQRES 9 B 252 ILE ASP SER GLY LEU VAL ASP MET ILE ASP LEU GLU LEU SEQRES 10 B 252 PHE THR GLY ASP ALA ASP VAL LYS ALA THR VAL ASP TYR SEQRES 11 B 252 ALA HIS ALA HIS ASN VAL TYR VAL VAL MET SER ASN HIS SEQRES 12 B 252 ASP PHE HIS GLN THR PRO SER ALA GLU GLU MET VAL LEU SEQRES 13 B 252 ARG LEU ARG LYS MET GLN ALA LEU GLY ALA ASP ILE PRO SEQRES 14 B 252 LYS ILE ALA VAL MET PRO GLN SER LYS HIS ASP VAL LEU SEQRES 15 B 252 THR LEU LEU THR ALA THR LEU GLU MET GLN GLN HIS TYR SEQRES 16 B 252 ALA ASP ARG PRO VAL ILE THR MET SER MET ALA LYS GLU SEQRES 17 B 252 GLY VAL ILE SER ARG LEU ALA GLY GLU VAL PHE GLY SER SEQRES 18 B 252 ALA ALA THR PHE GLY ALA VAL LYS GLN ALA SER ALA PRO SEQRES 19 B 252 GLY GLN ILE ALA VAL ASN ASP LEU ARG SER VAL LEU MET SEQRES 20 B 252 ILE LEU HIS ASN ALA SEQRES 1 C 252 MET LYS THR VAL THR VAL LYS ASN LEU ILE ILE GLY GLU SEQRES 2 C 252 GLY MET PRO LYS ILE ILE VAL SER LEU MET GLY ARG ASP SEQRES 3 C 252 ILE ASN SER VAL LYS ALA GLU ALA LEU ALA TYR ARG GLU SEQRES 4 C 252 ALA THR PHE ASP ILE LEU GLU TRP ARG VAL ASP HIS PHE SEQRES 5 C 252 MET ASP ILE ALA SER THR GLN SER VAL LEU THR ALA ALA SEQRES 6 C 252 ARG VAL ILE ARG ASP ALA MET PRO ASP ILE PRO LEU LEU SEQRES 7 C 252 PHE THR PHE ARG SER ALA LYS GLU GLY GLY GLU GLN THR SEQRES 8 C 252 ILE THR THR GLN HIS TYR LEU THR LEU ASN ARG ALA ALA SEQRES 9 C 252 ILE ASP SER GLY LEU VAL ASP MET ILE ASP LEU GLU LEU SEQRES 10 C 252 PHE THR GLY ASP ALA ASP VAL LYS ALA THR VAL ASP TYR SEQRES 11 C 252 ALA HIS ALA HIS ASN VAL TYR VAL VAL MET SER ASN HIS SEQRES 12 C 252 ASP PHE HIS GLN THR PRO SER ALA GLU GLU MET VAL LEU SEQRES 13 C 252 ARG LEU ARG LYS MET GLN ALA LEU GLY ALA ASP ILE PRO SEQRES 14 C 252 LYS ILE ALA VAL MET PRO GLN SER LYS HIS ASP VAL LEU SEQRES 15 C 252 THR LEU LEU THR ALA THR LEU GLU MET GLN GLN HIS TYR SEQRES 16 C 252 ALA ASP ARG PRO VAL ILE THR MET SER MET ALA LYS GLU SEQRES 17 C 252 GLY VAL ILE SER ARG LEU ALA GLY GLU VAL PHE GLY SER SEQRES 18 C 252 ALA ALA THR PHE GLY ALA VAL LYS GLN ALA SER ALA PRO SEQRES 19 C 252 GLY GLN ILE ALA VAL ASN ASP LEU ARG SER VAL LEU MET SEQRES 20 C 252 ILE LEU HIS ASN ALA SEQRES 1 D 252 MET LYS THR VAL THR VAL LYS ASN LEU ILE ILE GLY GLU SEQRES 2 D 252 GLY MET PRO LYS ILE ILE VAL SER LEU MET GLY ARG ASP SEQRES 3 D 252 ILE ASN SER VAL LYS ALA GLU ALA LEU ALA TYR ARG GLU SEQRES 4 D 252 ALA THR PHE ASP ILE LEU GLU TRP ARG VAL ASP HIS PHE SEQRES 5 D 252 MET ASP ILE ALA SER THR GLN SER VAL LEU THR ALA ALA SEQRES 6 D 252 ARG VAL ILE ARG ASP ALA MET PRO ASP ILE PRO LEU LEU SEQRES 7 D 252 PHE THR PHE ARG SER ALA LYS GLU GLY GLY GLU GLN THR SEQRES 8 D 252 ILE THR THR GLN HIS TYR LEU THR LEU ASN ARG ALA ALA SEQRES 9 D 252 ILE ASP SER GLY LEU VAL ASP MET ILE ASP LEU GLU LEU SEQRES 10 D 252 PHE THR GLY ASP ALA ASP VAL LYS ALA THR VAL ASP TYR SEQRES 11 D 252 ALA HIS ALA HIS ASN VAL TYR VAL VAL MET SER ASN HIS SEQRES 12 D 252 ASP PHE HIS GLN THR PRO SER ALA GLU GLU MET VAL LEU SEQRES 13 D 252 ARG LEU ARG LYS MET GLN ALA LEU GLY ALA ASP ILE PRO SEQRES 14 D 252 LYS ILE ALA VAL MET PRO GLN SER LYS HIS ASP VAL LEU SEQRES 15 D 252 THR LEU LEU THR ALA THR LEU GLU MET GLN GLN HIS TYR SEQRES 16 D 252 ALA ASP ARG PRO VAL ILE THR MET SER MET ALA LYS GLU SEQRES 17 D 252 GLY VAL ILE SER ARG LEU ALA GLY GLU VAL PHE GLY SER SEQRES 18 D 252 ALA ALA THR PHE GLY ALA VAL LYS GLN ALA SER ALA PRO SEQRES 19 D 252 GLY GLN ILE ALA VAL ASN ASP LEU ARG SER VAL LEU MET SEQRES 20 D 252 ILE LEU HIS ASN ALA HET 9PY A 301 14 HET 9PY B 301 14 HET 9PY C 301 14 HET 9PY D 301 14 HETNAM 9PY (2R)-2-METHYL-3-DEHYDROQUINIC ACID FORMUL 5 9PY 4(C8 H12 O6) FORMUL 9 HOH *297(H2 O) HELIX 1 1 ASP A 26 ALA A 40 1 15 HELIX 2 2 ASP A 50 PHE A 52 5 3 HELIX 3 3 SER A 57 MET A 72 1 16 HELIX 4 4 THR A 93 SER A 107 1 15 HELIX 5 5 GLY A 120 HIS A 134 1 15 HELIX 6 6 SER A 150 LEU A 164 1 15 HELIX 7 7 SER A 177 TYR A 195 1 19 HELIX 8 8 GLY A 209 LEU A 214 5 6 HELIX 9 9 ALA A 215 GLY A 220 1 6 HELIX 10 10 ALA A 238 ALA A 252 1 15 HELIX 11 11 ASP B 26 ALA B 36 1 11 HELIX 12 12 ASP B 50 PHE B 52 5 3 HELIX 13 13 SER B 57 MET B 72 1 16 HELIX 14 14 SER B 83 GLY B 87 5 5 HELIX 15 15 THR B 93 GLY B 108 1 16 HELIX 16 16 GLY B 120 HIS B 134 1 15 HELIX 17 17 SER B 150 LEU B 164 1 15 HELIX 18 18 SER B 177 TYR B 195 1 19 HELIX 19 19 ALA B 206 LEU B 214 5 9 HELIX 20 20 ALA B 215 GLY B 220 1 6 HELIX 21 21 ALA B 238 ASN B 251 1 14 HELIX 22 22 ASP C 26 ARG C 38 1 13 HELIX 23 23 ASP C 50 PHE C 52 5 3 HELIX 24 24 SER C 57 MET C 72 1 16 HELIX 25 25 SER C 83 GLY C 87 5 5 HELIX 26 26 THR C 93 GLY C 108 1 16 HELIX 27 27 GLY C 120 HIS C 134 1 15 HELIX 28 28 SER C 150 LEU C 164 1 15 HELIX 29 29 SER C 177 TYR C 195 1 19 HELIX 30 30 VAL C 210 ALA C 215 1 6 HELIX 31 31 ALA C 215 GLY C 220 1 6 HELIX 32 32 ALA C 238 ASN C 251 1 14 HELIX 33 33 ASP D 26 ARG D 38 1 13 HELIX 34 34 ASP D 50 PHE D 52 5 3 HELIX 35 35 SER D 57 MET D 72 1 16 HELIX 36 36 SER D 83 GLY D 87 5 5 HELIX 37 37 THR D 93 SER D 107 1 15 HELIX 38 38 GLY D 120 HIS D 134 1 15 HELIX 39 39 SER D 150 LEU D 164 1 15 HELIX 40 40 SER D 177 TYR D 195 1 19 HELIX 41 41 GLY D 209 ALA D 215 1 7 HELIX 42 42 ALA D 215 GLY D 220 1 6 HELIX 43 43 ALA D 238 ASN D 251 1 14 SHEET 1 A 2 VAL A 4 VAL A 6 0 SHEET 2 A 2 LEU A 9 ILE A 11 -1 O ILE A 11 N VAL A 4 SHEET 1 B 8 ILE A 201 SER A 204 0 SHEET 2 B 8 ILE A 168 VAL A 173 1 N PRO A 169 O ILE A 201 SHEET 3 B 8 TYR A 137 ASP A 144 1 N MET A 140 O LYS A 170 SHEET 4 B 8 MET A 112 GLU A 116 1 N ILE A 113 O VAL A 139 SHEET 5 B 8 LEU A 77 THR A 80 1 N PHE A 79 O MET A 112 SHEET 6 B 8 ILE A 44 ARG A 48 1 N LEU A 45 O LEU A 78 SHEET 7 B 8 LYS A 17 LEU A 22 1 N LEU A 22 O GLU A 46 SHEET 8 B 8 ALA A 223 PHE A 225 1 O THR A 224 N ILE A 19 SHEET 1 C 2 VAL B 4 VAL B 6 0 SHEET 2 C 2 LEU B 9 ILE B 11 -1 O ILE B 11 N VAL B 4 SHEET 1 D 8 ILE B 201 SER B 204 0 SHEET 2 D 8 ILE B 168 VAL B 173 1 N PRO B 169 O ILE B 201 SHEET 3 D 8 TYR B 137 ASP B 144 1 N ASP B 144 O ALA B 172 SHEET 4 D 8 MET B 112 GLU B 116 1 N ILE B 113 O VAL B 139 SHEET 5 D 8 LEU B 77 THR B 80 1 N PHE B 79 O ASP B 114 SHEET 6 D 8 ILE B 44 ARG B 48 1 N LEU B 45 O LEU B 78 SHEET 7 D 8 LYS B 17 LEU B 22 1 N LEU B 22 O GLU B 46 SHEET 8 D 8 ALA B 223 PHE B 225 1 O THR B 224 N ILE B 19 SHEET 1 E 2 VAL C 4 VAL C 6 0 SHEET 2 E 2 LEU C 9 ILE C 11 -1 O ILE C 11 N VAL C 4 SHEET 1 F 8 ILE C 201 SER C 204 0 SHEET 2 F 8 ILE C 168 VAL C 173 1 N PRO C 169 O ILE C 201 SHEET 3 F 8 TYR C 137 ASP C 144 1 N ASP C 144 O ALA C 172 SHEET 4 F 8 MET C 112 GLU C 116 1 N ILE C 113 O VAL C 139 SHEET 5 F 8 LEU C 77 THR C 80 1 N PHE C 79 O MET C 112 SHEET 6 F 8 ILE C 44 ARG C 48 1 N LEU C 45 O LEU C 78 SHEET 7 F 8 LYS C 17 LEU C 22 1 N LEU C 22 O GLU C 46 SHEET 8 F 8 ALA C 223 PHE C 225 1 O THR C 224 N ILE C 19 SHEET 1 G 2 VAL D 4 VAL D 6 0 SHEET 2 G 2 LEU D 9 ILE D 11 -1 O ILE D 11 N VAL D 4 SHEET 1 H 8 ILE D 201 SER D 204 0 SHEET 2 H 8 ILE D 168 VAL D 173 1 N PRO D 169 O ILE D 201 SHEET 3 H 8 TYR D 137 ASP D 144 1 N ASP D 144 O ALA D 172 SHEET 4 H 8 MET D 112 GLU D 116 1 N ILE D 113 O VAL D 139 SHEET 5 H 8 LEU D 77 THR D 80 1 N PHE D 79 O MET D 112 SHEET 6 H 8 ILE D 44 ARG D 48 1 N TRP D 47 O LEU D 78 SHEET 7 H 8 LYS D 17 LEU D 22 1 N LEU D 22 O GLU D 46 SHEET 8 H 8 ALA D 223 PHE D 225 1 O THR D 224 N ILE D 19 SITE 1 AC1 9 SER A 21 GLU A 46 ARG A 48 MET A 203 SITE 2 AC1 9 ARG A 213 PHE A 225 GLN A 236 HOH A2011 SITE 3 AC1 9 HOH A2013 SITE 1 AC2 12 SER B 21 MET B 23 GLU B 46 ARG B 48 SITE 2 AC2 12 HIS B 143 MET B 203 MET B 205 ARG B 213 SITE 3 AC2 12 PHE B 225 GLN B 236 HOH B2013 HOH B2047 SITE 1 AC3 6 SER C 21 GLU C 46 ARG C 48 ARG C 213 SITE 2 AC3 6 PHE C 225 HOH C2019 SITE 1 AC4 10 SER D 21 GLU D 46 ARG D 48 LYS D 170 SITE 2 AC4 10 ARG D 213 PHE D 225 GLN D 236 HOH D2017 SITE 3 AC4 10 HOH D2018 HOH D2065 CRYST1 78.670 39.406 155.130 90.00 104.68 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012711 0.000000 0.003330 0.00000 SCALE2 0.000000 0.025377 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006664 0.00000