HEADER LYASE 23-JAN-14 4CNP TITLE STRUCTURE OF THE SALMONELLA TYPHI TYPE I DEHYDROQUINASE INHIBITED BY A TITLE 2 3-EPIQUINIC ACID DERIVATIVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-DEHYDROQUINATE DEHYDRATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 3-DEHYDROQUINASE, TYPE I DHQASE; COMPND 5 EC: 4.2.1.10; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 TYPHI; SOURCE 4 ORGANISM_TAXID: 90370; SOURCE 5 ATCC: 19430; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS SHIKIMIS ACID PATHWAY, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.OTERO,A.L.LLAMAS-SAIZ,M.MANEIRO,A.PEON,E.LENCE,H.LAMB, AUTHOR 2 A.R.HAWKINS,C.GONZALEZ-BELLO,M.J.VAN RAAIJ REVDAT 3 20-DEC-23 4CNP 1 REMARK LINK REVDAT 2 24-JAN-18 4CNP 1 JRNL REVDAT 1 18-FEB-15 4CNP 0 JRNL AUTH M.MANEIRO,A.PEON,E.LENCE,J.M.OTERO,A.L.LLAMAS-SAIZ, JRNL AUTH 2 M.J.VAN RAAIJ,H.LAMB,A.R.HAWKINS,C.GONZALEZ-BELLO JRNL TITL MECHANISTIC INSIGHT INTO THE REACTION CATALYZED BY TYPE I JRNL TITL 2 DEHYDROQUINASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 153096 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.134 REMARK 3 R VALUE (WORKING SET) : 0.133 REMARK 3 FREE R VALUE : 0.160 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3124 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 21634 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.1850 REMARK 3 BIN FREE R VALUE SET COUNT : 437 REMARK 3 BIN FREE R VALUE : 0.2220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3860 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 668 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 8.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.21000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : -0.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.25000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.033 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.033 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.020 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.944 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.972 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4310 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4356 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5882 ; 1.354 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10054 ; 0.784 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 545 ; 5.695 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 182 ;37.237 ;24.011 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 838 ;12.905 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;14.715 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 730 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4749 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 929 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1734 ; 0.244 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4121 ; 0.171 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2053 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2465 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 124 ; 0.138 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 2 ; 0.001 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.095 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 172 ; 0.237 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 105 ; 0.206 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.085 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4310 ; 3.724 ; 1.021 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4356 ; 1.494 ; 1.057 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5866 ; 5.096 ; 1.510 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 7544 ; 6.021 ;10.167 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 10054 ; 2.797 ; 1.561 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 8666 ; 1.358 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 97 ;22.142 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 9160 ; 5.697 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. INHIBITOR INCLUDED IN ENZYME ACTIVE SITE BY SOAKING REMARK 3 OF APO- CRYSTALS IN INHIBITOR SOLUTION REMARK 4 REMARK 4 4CNP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1290059422. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.09723 REMARK 200 MONOCHROMATOR : CHANNEL-CUT DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : PLANE-ELLIPSOIDAL MIRRORS (SI, REMARK 200 RH, IR) REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 156242 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.150 REMARK 200 RESOLUTION RANGE LOW (A) : 84.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.33000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1QFE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 4000, 0.1 M CITRATE-PHOSPHATE REMARK 280 PH 6.4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 22.23650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 229 CG CD CE NZ REMARK 470 GLN A 230 CG CD OE1 NE2 REMARK 470 GLN B 230 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OAG 9C4 A 301 O HOH A 2355 2.10 REMARK 500 O HOH A 2363 O HOH A 2375 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 53 CG - SD - CE ANGL. DEV. = -21.7 DEGREES REMARK 500 MET A 203 CG - SD - CE ANGL. DEV. = -9.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 206 174.36 70.61 REMARK 500 LYS A 229 -49.17 -130.37 REMARK 500 TYR B 195 -60.06 -131.19 REMARK 500 ALA B 196 44.53 -94.73 REMARK 500 ALA B 196 128.65 -37.55 REMARK 500 ALA B 206 176.09 69.42 REMARK 500 LYS B 229 -72.98 -119.67 REMARK 500 LYS B 229 -43.58 -138.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2015 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH A2019 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A2033 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH A2034 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A2039 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A2063 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A2114 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A2160 DISTANCE = 6.35 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1253 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 23 O REMARK 620 2 GLU A 33 OE2 38.8 REMARK 620 3 HOH A2077 O 103.1 123.7 REMARK 620 4 HOH A2111 O 103.4 77.4 76.8 REMARK 620 5 HOH A2393 O 94.1 108.0 115.9 155.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B1253 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 56 O REMARK 620 2 TYR B 130 OH 100.9 REMARK 620 3 HOH B2274 O 117.7 135.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1256 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 101 OD1 REMARK 620 2 ASN A 101 OD1 28.4 REMARK 620 3 ASP A 114 O 102.7 87.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1255 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 134 NE2 REMARK 620 2 HOH A2264 O 106.5 REMARK 620 3 HOH A2394 O 126.1 78.1 REMARK 620 4 ALA B 56 O 109.8 119.0 113.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1254 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 135 O REMARK 620 2 HOH A2241 O 133.1 REMARK 620 3 HOH A2243 O 106.0 78.4 REMARK 620 4 HOH A2271 O 99.6 63.2 141.6 REMARK 620 5 HOH A2273 O 103.2 117.8 114.2 86.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B1255 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 101 OD1 REMARK 620 2 ASP B 114 O 85.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B1254 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B2135 O REMARK 620 2 HOH B2149 O 104.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 9C4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 9C4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1253 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1254 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 1253 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1255 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 1254 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1256 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 1255 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1256 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CNN RELATED DB: PDB REMARK 900 HIGH RESOLUTION STRUCTURE OF SALMONELLA TYPHI TYPE I DEHYDROQUINASE REMARK 900 RELATED ID: 4CNO RELATED DB: PDB REMARK 900 STRUCTURE OF THE SALMONELLA TYPHI TYPE I DEHYDROQUINASE INHIBITED REMARK 900 BY A 3-DEHYDROQUINIC ACID DERIVATIVE DBREF 4CNP A 1 252 UNP P24670 AROD_SALTI 1 252 DBREF 4CNP B 1 252 UNP P24670 AROD_SALTI 1 252 SEQRES 1 A 252 MET LYS THR VAL THR VAL LYS ASN LEU ILE ILE GLY GLU SEQRES 2 A 252 GLY MET PRO LYS ILE ILE VAL SER LEU MET GLY ARG ASP SEQRES 3 A 252 ILE ASN SER VAL LYS ALA GLU ALA LEU ALA TYR ARG GLU SEQRES 4 A 252 ALA THR PHE ASP ILE LEU GLU TRP ARG VAL ASP HIS PHE SEQRES 5 A 252 MET ASP ILE ALA SER THR GLN SER VAL LEU THR ALA ALA SEQRES 6 A 252 ARG VAL ILE ARG ASP ALA MET PRO ASP ILE PRO LEU LEU SEQRES 7 A 252 PHE THR PHE ARG SER ALA LYS GLU GLY GLY GLU GLN THR SEQRES 8 A 252 ILE THR THR GLN HIS TYR LEU THR LEU ASN ARG ALA ALA SEQRES 9 A 252 ILE ASP SER GLY LEU VAL ASP MET ILE ASP LEU GLU LEU SEQRES 10 A 252 PHE THR GLY ASP ALA ASP VAL LYS ALA THR VAL ASP TYR SEQRES 11 A 252 ALA HIS ALA HIS ASN VAL TYR VAL VAL MET SER ASN HIS SEQRES 12 A 252 ASP PHE HIS GLN THR PRO SER ALA GLU GLU MET VAL LEU SEQRES 13 A 252 ARG LEU ARG LYS MET GLN ALA LEU GLY ALA ASP ILE PRO SEQRES 14 A 252 LYS ILE ALA VAL MET PRO GLN SER LYS HIS ASP VAL LEU SEQRES 15 A 252 THR LEU LEU THR ALA THR LEU GLU MET GLN GLN HIS TYR SEQRES 16 A 252 ALA ASP ARG PRO VAL ILE THR MET SER MET ALA LYS GLU SEQRES 17 A 252 GLY VAL ILE SER ARG LEU ALA GLY GLU VAL PHE GLY SER SEQRES 18 A 252 ALA ALA THR PHE GLY ALA VAL LYS GLN ALA SER ALA PRO SEQRES 19 A 252 GLY GLN ILE ALA VAL ASN ASP LEU ARG SER VAL LEU MET SEQRES 20 A 252 ILE LEU HIS ASN ALA SEQRES 1 B 252 MET LYS THR VAL THR VAL LYS ASN LEU ILE ILE GLY GLU SEQRES 2 B 252 GLY MET PRO LYS ILE ILE VAL SER LEU MET GLY ARG ASP SEQRES 3 B 252 ILE ASN SER VAL LYS ALA GLU ALA LEU ALA TYR ARG GLU SEQRES 4 B 252 ALA THR PHE ASP ILE LEU GLU TRP ARG VAL ASP HIS PHE SEQRES 5 B 252 MET ASP ILE ALA SER THR GLN SER VAL LEU THR ALA ALA SEQRES 6 B 252 ARG VAL ILE ARG ASP ALA MET PRO ASP ILE PRO LEU LEU SEQRES 7 B 252 PHE THR PHE ARG SER ALA LYS GLU GLY GLY GLU GLN THR SEQRES 8 B 252 ILE THR THR GLN HIS TYR LEU THR LEU ASN ARG ALA ALA SEQRES 9 B 252 ILE ASP SER GLY LEU VAL ASP MET ILE ASP LEU GLU LEU SEQRES 10 B 252 PHE THR GLY ASP ALA ASP VAL LYS ALA THR VAL ASP TYR SEQRES 11 B 252 ALA HIS ALA HIS ASN VAL TYR VAL VAL MET SER ASN HIS SEQRES 12 B 252 ASP PHE HIS GLN THR PRO SER ALA GLU GLU MET VAL LEU SEQRES 13 B 252 ARG LEU ARG LYS MET GLN ALA LEU GLY ALA ASP ILE PRO SEQRES 14 B 252 LYS ILE ALA VAL MET PRO GLN SER LYS HIS ASP VAL LEU SEQRES 15 B 252 THR LEU LEU THR ALA THR LEU GLU MET GLN GLN HIS TYR SEQRES 16 B 252 ALA ASP ARG PRO VAL ILE THR MET SER MET ALA LYS GLU SEQRES 17 B 252 GLY VAL ILE SER ARG LEU ALA GLY GLU VAL PHE GLY SER SEQRES 18 B 252 ALA ALA THR PHE GLY ALA VAL LYS GLN ALA SER ALA PRO SEQRES 19 B 252 GLY GLN ILE ALA VAL ASN ASP LEU ARG SER VAL LEU MET SEQRES 20 B 252 ILE LEU HIS ASN ALA HET 9C4 A 301 14 HET NA A1253 1 HET NA A1254 1 HET NA A1255 1 HET NA A1256 1 HET 9C4 B 301 14 HET NA B1253 1 HET NA B1254 1 HET NA B1255 1 HET CL B1256 1 HETNAM 9C4 (2S)-2-HYDROXY-3-EPIQUINIC ACID HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION FORMUL 3 9C4 2(C7 H12 O7) FORMUL 4 NA 7(NA 1+) FORMUL 12 CL CL 1- FORMUL 13 HOH *668(H2 O) HELIX 1 1 ASP A 26 ARG A 38 1 13 HELIX 2 2 ASP A 50 PHE A 52 5 3 HELIX 3 3 SER A 57 MET A 72 1 16 HELIX 4 4 SER A 83 GLY A 87 5 5 HELIX 5 5 THR A 93 SER A 107 1 15 HELIX 6 6 GLY A 120 HIS A 134 1 15 HELIX 7 7 SER A 150 LEU A 164 1 15 HELIX 8 8 SER A 177 TYR A 195 1 19 HELIX 9 9 ALA A 206 GLY A 209 5 4 HELIX 10 10 VAL A 210 ALA A 215 1 6 HELIX 11 11 ALA A 215 GLY A 220 1 6 HELIX 12 12 ALA A 238 ALA A 252 1 15 HELIX 13 13 ASP B 26 ARG B 38 1 13 HELIX 14 14 ASP B 50 PHE B 52 5 3 HELIX 15 15 SER B 57 MET B 72 1 16 HELIX 16 16 SER B 83 GLY B 87 5 5 HELIX 17 17 THR B 93 GLY B 108 1 16 HELIX 18 18 GLY B 120 HIS B 134 1 15 HELIX 19 19 SER B 150 LEU B 164 1 15 HELIX 20 20 SER B 177 TYR B 195 1 19 HELIX 21 21 ALA B 206 GLU B 208 5 3 HELIX 22 22 GLY B 209 ALA B 215 1 7 HELIX 23 23 ALA B 215 GLY B 220 1 6 HELIX 24 24 ALA B 238 ALA B 252 1 15 SHEET 1 AA 2 VAL A 4 VAL A 6 0 SHEET 2 AA 2 LEU A 9 ILE A 11 -1 O LEU A 9 N VAL A 6 SHEET 1 AB 8 ILE A 201 SER A 204 0 SHEET 2 AB 8 ILE A 168 VAL A 173 1 O PRO A 169 N ILE A 201 SHEET 3 AB 8 TYR A 137 ASP A 144 1 O VAL A 138 N ILE A 168 SHEET 4 AB 8 MET A 112 GLU A 116 1 O ILE A 113 N VAL A 139 SHEET 5 AB 8 LEU A 77 THR A 80 1 O PHE A 79 N ASP A 114 SHEET 6 AB 8 ILE A 44 ARG A 48 1 O LEU A 45 N LEU A 78 SHEET 7 AB 8 LYS A 17 LEU A 22 1 O VAL A 20 N GLU A 46 SHEET 8 AB 8 ALA A 223 PHE A 225 1 O THR A 224 N ILE A 19 SHEET 1 BA 2 VAL B 4 VAL B 6 0 SHEET 2 BA 2 LEU B 9 ILE B 11 -1 O LEU B 9 N VAL B 6 SHEET 1 BB 8 ILE B 201 SER B 204 0 SHEET 2 BB 8 ILE B 168 VAL B 173 1 O PRO B 169 N ILE B 201 SHEET 3 BB 8 TYR B 137 ASP B 144 1 O VAL B 138 N ILE B 168 SHEET 4 BB 8 MET B 112 GLU B 116 1 O ILE B 113 N VAL B 139 SHEET 5 BB 8 LEU B 77 THR B 80 1 O LEU B 77 N MET B 112 SHEET 6 BB 8 ILE B 44 ARG B 48 1 O LEU B 45 N LEU B 78 SHEET 7 BB 8 LYS B 17 LEU B 22 1 O ILE B 18 N ILE B 44 SHEET 8 BB 8 ALA B 223 GLY B 226 1 O THR B 224 N ILE B 19 LINK O BMET A 23 NA NA A1253 1555 1555 2.44 LINK OE2AGLU A 33 NA NA A1253 1555 1555 3.02 LINK O ALA A 56 NA NA B1253 1556 1555 2.77 LINK OD1BASN A 101 NA NA A1256 1555 1555 2.93 LINK OD1AASN A 101 NA NA A1256 1555 1555 2.75 LINK O ASP A 114 NA NA A1256 1555 1555 2.76 LINK NE2 HIS A 134 NA NA A1255 1555 1555 2.72 LINK O ASN A 135 NA NA A1254 1555 1555 2.83 LINK NA NA A1253 O HOH A2077 1555 1555 2.55 LINK NA NA A1253 O HOH A2111 1555 1555 2.36 LINK NA NA A1253 O HOH A2393 1555 1555 2.57 LINK NA NA A1254 O HOH A2241 1555 1555 2.32 LINK NA NA A1254 O HOH A2243 1555 1555 2.25 LINK NA NA A1254 O HOH A2271 1555 1555 2.65 LINK NA NA A1254 O HOH A2273 1555 1555 2.80 LINK NA NA A1255 O HOH A2264 1555 1555 2.40 LINK NA NA A1255 O HOH A2394 1555 1555 2.68 LINK NA NA A1255 O ALA B 56 1555 1554 2.81 LINK OD1 ASN B 101 NA NA B1255 1555 1555 2.76 LINK O ASP B 114 NA NA B1255 1555 1555 2.73 LINK OH TYR B 130 NA NA B1253 1555 1555 2.71 LINK NA NA B1253 O HOH B2274 1555 1555 2.64 LINK NA NA B1254 O HOH B2135 1555 1555 2.71 LINK NA NA B1254 O HOH B2149 1555 1555 2.66 SITE 1 AC1 15 SER A 21 GLU A 46 ARG A 48 ARG A 82 SITE 2 AC1 15 LYS A 170 ALA A 172 MET A 203 ARG A 213 SITE 3 AC1 15 PHE A 225 SER A 232 ALA A 233 GLN A 236 SITE 4 AC1 15 HOH A2150 HOH A2202 HOH A2355 SITE 1 AC2 14 SER B 21 GLU B 46 ARG B 48 ARG B 82 SITE 2 AC2 14 LYS B 170 ALA B 172 MET B 203 ARG B 213 SITE 3 AC2 14 PHE B 225 SER B 232 ALA B 233 GLN B 236 SITE 4 AC2 14 HOH B2095 HOH B2133 SITE 1 AC3 4 GLU A 33 HOH A2077 HOH A2111 HOH A2393 SITE 1 AC4 5 ASN A 135 HOH A2241 HOH A2243 HOH A2271 SITE 2 AC4 5 HOH A2273 SITE 1 AC5 5 ALA A 56 HIS A 96 TYR B 130 HIS B 134 SITE 2 AC5 5 HOH B2274 SITE 1 AC6 5 TYR A 130 HIS A 134 HOH A2264 HOH A2394 SITE 2 AC6 5 ALA B 56 SITE 1 AC7 7 SER B 83 ALA B 84 GLN B 90 THR B 91 SITE 2 AC7 7 ILE B 92 HOH B2135 HOH B2149 SITE 1 AC8 3 PHE A 81 ASN A 101 ASP A 114 SITE 1 AC9 3 PHE B 81 ASN B 101 ASP B 114 SITE 1 BC1 4 HIS A 96 THR A 99 ARG B 102 TYR B 130 CRYST1 60.216 44.473 84.702 90.00 95.20 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016607 0.000000 0.001511 0.00000 SCALE2 0.000000 0.022486 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011855 0.00000