HEADER SIGNALING PROTEIN 25-JAN-14 4CO3 TITLE STRUCTURE OF PII SIGNALING PROTEIN GLNZ FROM AZOSPIRILLUM BRASILENSE TITLE 2 IN COMPLEX WITH ADENOSINE TRIPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PII-LIKE PROTEIN PZ; COMPND 3 CHAIN: A, B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AZOSPIRILLUM BRASILENSE; SOURCE 3 ORGANISM_TAXID: 192 KEYWDS SIGNALING PROTEIN, GLNK-LIKE EXPDTA X-RAY DIFFRACTION AUTHOR D.TRUAN,X.-D.LI,F.K.WINKLER REVDAT 5 20-DEC-23 4CO3 1 REMARK REVDAT 4 30-JAN-19 4CO3 1 JRNL REMARK ATOM REVDAT 3 30-JUL-14 4CO3 1 JRNL REVDAT 2 04-JUN-14 4CO3 1 JRNL REVDAT 1 28-MAY-14 4CO3 0 JRNL AUTH D.TRUAN,S.BJELIC,X.D.LI,F.K.WINKLER JRNL TITL STRUCTURE AND THERMODYNAMICS OF EFFECTOR MOLECULE BINDING TO JRNL TITL 2 THE NITROGEN SIGNAL TRANSDUCTION PII PROTEIN GLNZ FROM JRNL TITL 3 AZOSPIRILLUM BRASILENSE. JRNL REF J. MOL. BIOL. V. 426 2783 2014 JRNL REFN ESSN 1089-8638 JRNL PMID 24846646 JRNL DOI 10.1016/J.JMB.2014.05.008 REMARK 2 REMARK 2 RESOLUTION. 1.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 84994 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4265 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 17.8866 - 2.8468 0.83 3551 187 0.0812 0.1532 REMARK 3 2 2.8468 - 2.2611 0.95 4070 215 0.1041 0.1643 REMARK 3 3 2.2611 - 1.9757 0.95 4085 215 0.1325 0.1808 REMARK 3 4 1.9757 - 1.7952 0.95 4081 214 0.1676 0.2191 REMARK 3 5 1.7952 - 1.6666 0.95 4084 215 0.2000 0.2322 REMARK 3 6 1.6666 - 1.5684 0.95 4080 215 0.2063 0.2478 REMARK 3 7 1.5684 - 1.4899 0.95 4062 214 0.2195 0.2380 REMARK 3 8 1.4899 - 1.4251 0.95 4072 214 0.2340 0.2560 REMARK 3 9 1.4251 - 1.3703 0.95 4104 216 0.2411 0.2558 REMARK 3 10 1.3703 - 1.3230 0.95 4042 213 0.2492 0.2853 REMARK 3 11 1.3230 - 1.2816 0.95 4088 215 0.2489 0.2578 REMARK 3 12 1.2816 - 1.2450 0.95 4072 214 0.2421 0.2472 REMARK 3 13 1.2450 - 1.2122 0.95 4061 214 0.2388 0.2411 REMARK 3 14 1.2122 - 1.1827 0.95 4091 215 0.2357 0.2466 REMARK 3 15 1.1827 - 1.1558 0.95 4032 213 0.2417 0.2574 REMARK 3 16 1.1558 - 1.1312 0.95 4082 215 0.2396 0.2565 REMARK 3 17 1.1312 - 1.1086 0.95 4082 214 0.2476 0.2794 REMARK 3 18 1.1086 - 1.0877 0.95 4095 216 0.2730 0.2851 REMARK 3 19 1.0877 - 1.0682 0.94 4057 213 0.2771 0.2863 REMARK 3 20 1.0682 - 1.0501 0.89 3843 203 0.2846 0.3022 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.5300 REMARK 3 OPERATOR: H,-H-K,-L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1648 REMARK 3 ANGLE : 0.737 2231 REMARK 3 CHIRALITY : 0.043 266 REMARK 3 PLANARITY : 0.003 270 REMARK 3 DIHEDRAL : 12.911 607 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CO3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1290059578. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : BARTELS MONOCHROMATOR REMARK 200 OPTICS : VERTICALLY COLLIMATING MIRROR REMARK 200 FOLLOWED BY A BARTELS REMARK 200 MONOCHROMATOR AND A TOROIDAL REMARK 200 MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84996 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.050 REMARK 200 RESOLUTION RANGE LOW (A) : 32.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.210 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 2.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.58 REMARK 200 R MERGE FOR SHELL (I) : 0.88000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4CNY REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 6.5, 40% PEG 200, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K, PH 7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.85000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.73946 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 22.37667 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 42.85000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 24.73946 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 22.37667 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 42.85000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 24.73946 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 22.37667 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.47892 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 44.75333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 49.47892 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 44.75333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 49.47892 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 44.75333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2066 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2070 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2127 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2179 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2180 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2181 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2060 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2122 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2143 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2199 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2200 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 26 REMARK 465 GLU A 106 REMARK 465 THR A 107 REMARK 465 ASN A 108 REMARK 465 THR A 109 REMARK 465 GLU A 110 REMARK 465 ALA A 111 REMARK 465 LEU A 112 REMARK 465 GLN B 26 REMARK 465 GLY B 48 REMARK 465 ALA B 49 REMARK 465 THR B 109 REMARK 465 GLU B 110 REMARK 465 ALA B 111 REMARK 465 LEU B 112 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 18 CG CD OE1 OE2 REMARK 470 LYS A 40 CG CD CE NZ REMARK 470 GLU A 71 CG CD OE1 OE2 REMARK 470 GLN A 72 CG CD OE1 NE2 REMARK 470 GLU A 75 CD OE1 OE2 REMARK 470 LYS A 79 CE NZ REMARK 470 GLN B 39 CG CD OE1 NE2 REMARK 470 LYS B 40 CG CD CE NZ REMARK 470 ILE B 45 CG1 CG2 CD1 REMARK 470 ARG B 47 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 50 CD OE1 OE2 REMARK 470 GLU B 75 CD OE1 OE2 REMARK 470 LYS B 79 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS A 34 O HOH A 2111 1.51 REMARK 500 O HOH B 2272 O HOH B 2275 1.79 REMARK 500 O HOH A 2025 O HOH A 2067 1.82 REMARK 500 O HOH A 2128 O HOH B 2217 1.82 REMARK 500 O HOH B 2254 O HOH B 2255 1.82 REMARK 500 O HOH B 2132 O HOH B 2133 1.85 REMARK 500 O HOH B 2076 O HOH B 2182 1.86 REMARK 500 O HOH B 2112 O HOH B 2215 1.87 REMARK 500 OE2 GLU B 32 O HOH B 2126 1.89 REMARK 500 O HOH A 2003 O HOH A 2233 1.89 REMARK 500 O HOH B 2127 O HOH B 2128 1.90 REMARK 500 O HOH A 2074 O HOH A 2075 1.90 REMARK 500 O HOH A 2054 O HOH A 2152 1.91 REMARK 500 O HOH A 2036 O HOH A 2121 1.91 REMARK 500 O HOH A 2076 O HOH B 2221 1.92 REMARK 500 O HOH A 2103 O HOH A 2104 1.92 REMARK 500 O HOH B 2008 O HOH B 2276 1.92 REMARK 500 O HOH A 2190 O HOH A 2191 1.93 REMARK 500 O HOH B 2106 O HOH B 2110 1.93 REMARK 500 OD2 ASP A 68 O HOH A 2197 1.94 REMARK 500 O HOH A 2227 O HOH A 2228 1.94 REMARK 500 O HOH B 2005 O HOH B 2006 1.94 REMARK 500 O HOH B 2021 O HOH B 2049 1.94 REMARK 500 O HOH A 2063 O HOH A 2176 1.94 REMARK 500 O HOH A 2040 O HOH A 2133 1.95 REMARK 500 O HOH A 2048 O HOH A 2152 1.95 REMARK 500 O HOH B 2190 O HOH B 2191 1.95 REMARK 500 O HOH B 2047 O HOH B 2059 1.95 REMARK 500 O HOH B 2255 O HOH B 2256 1.95 REMARK 500 O HOH A 2134 O HOH A 2235 1.95 REMARK 500 O HOH A 2026 O HOH A 2069 1.95 REMARK 500 O HOH B 2154 O HOH B 2155 1.95 REMARK 500 O HOH A 2110 O HOH A 2111 1.96 REMARK 500 O HOH B 2236 O HOH B 2237 1.96 REMARK 500 O HOH B 2037 O HOH B 2040 1.96 REMARK 500 O ILE A 96 O HOH A 2003 1.96 REMARK 500 O HOH A 2026 O HOH A 2068 1.96 REMARK 500 O HOH A 2012 O HOH A 2071 1.96 REMARK 500 O HOH B 2052 O HOH B 2053 1.96 REMARK 500 O HOH A 2156 O HOH A 2157 1.97 REMARK 500 O HOH A 2184 O HOH A 2186 1.97 REMARK 500 O HOH B 2072 O HOH B 2074 1.97 REMARK 500 O HOH B 2057 O HOH B 2257 1.97 REMARK 500 O HOH B 2259 O HOH B 2260 1.97 REMARK 500 O HOH A 2012 O HOH A 2023 1.98 REMARK 500 O HOH A 2042 O HOH A 2043 1.98 REMARK 500 O HOH B 2006 O HOH B 2203 1.98 REMARK 500 O HOH B 2158 O HOH B 2262 1.98 REMARK 500 O HOH B 2141 O HOH B 2152 1.99 REMARK 500 O HOH B 2117 O HOH B 2222 1.99 REMARK 500 REMARK 500 THIS ENTRY HAS 180 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2159 O HOH B 2046 2554 1.79 REMARK 500 O HOH A 2083 O HOH B 2185 6454 1.83 REMARK 500 O HOH A 2048 O HOH B 2224 6444 1.86 REMARK 500 O HOH A 2047 O HOH B 2085 6444 1.88 REMARK 500 O HOH A 2189 O HOH B 2251 3555 1.89 REMARK 500 O HOH B 2032 O HOH B 2173 9444 1.90 REMARK 500 O HOH A 2046 O HOH A 2059 3555 1.90 REMARK 500 O HOH B 2114 O HOH B 2234 9444 1.91 REMARK 500 O HOH A 2225 O HOH A 2245 2555 1.92 REMARK 500 O2B ATP B 113 O HOH B 2239 2555 1.92 REMARK 500 O HOH B 2119 O HOH B 2146 9444 1.95 REMARK 500 O HOH A 2096 O HOH B 2267 8444 1.95 REMARK 500 O HOH B 2068 O HOH B 2223 5455 1.95 REMARK 500 O HOH A 2053 O HOH B 2121 6444 1.96 REMARK 500 O HOH A 2106 O HOH B 2275 8444 1.97 REMARK 500 O HOH B 2242 O HOH B 2242 3555 1.97 REMARK 500 O HOH A 2191 O HOH B 2246 3555 1.98 REMARK 500 O HOH B 2037 O HOH B 2283 2555 1.99 REMARK 500 O HOH B 2115 O HOH B 2234 9444 1.99 REMARK 500 O HOH A 2114 O HOH B 2172 8444 1.99 REMARK 500 O HOH B 2131 O HOH B 2263 3555 1.99 REMARK 500 O HOH A 2085 O HOH B 2078 6454 2.00 REMARK 500 O HOH A 2113 O HOH B 2103 8444 2.00 REMARK 500 O HOH A 2025 O HOH A 2161 4455 2.01 REMARK 500 O HOH A 2123 O HOH A 2239 2555 2.01 REMARK 500 O HOH A 2100 O HOH B 2128 1554 2.02 REMARK 500 O HOH A 2103 O HOH B 2063 1554 2.02 REMARK 500 O HOH A 2202 O HOH A 2234 2555 2.02 REMARK 500 O HOH A 2067 O HOH A 2161 4455 2.02 REMARK 500 O HOH A 2112 O HOH B 2128 2554 2.02 REMARK 500 O HOH A 2050 O HOH B 2226 6444 2.04 REMARK 500 OE1 GLN B 42 O HOH B 2084 5455 2.04 REMARK 500 O HOH B 2217 O HOH B 2248 3555 2.04 REMARK 500 O HOH B 2116 O HOH B 2250 3555 2.05 REMARK 500 O HOH A 2108 O HOH B 2256 8444 2.05 REMARK 500 O HOH B 2066 O HOH B 2117 5455 2.05 REMARK 500 O HOH A 2220 O HOH B 2279 4444 2.05 REMARK 500 O HOH A 2039 O HOH B 2070 6444 2.05 REMARK 500 O HOH A 2023 O HOH B 2027 5454 2.05 REMARK 500 O HOH A 2023 O HOH A 2122 3555 2.06 REMARK 500 O HOH B 2068 O HOH B 2110 5455 2.06 REMARK 500 OG SER B 22 O HOH B 2163 9444 2.06 REMARK 500 O HOH A 2035 O HOH A 2037 3555 2.06 REMARK 500 O HOH A 2060 O HOH B 2065 6444 2.06 REMARK 500 O HOH A 2152 O HOH B 2118 6444 2.07 REMARK 500 O HOH A 2014 O HOH B 2023 5454 2.07 REMARK 500 O HOH A 2042 O HOH A 2055 2555 2.08 REMARK 500 O HOH B 2020 O HOH B 2138 2555 2.08 REMARK 500 O HOH A 2054 O HOH B 2118 6444 2.08 REMARK 500 O HOH A 2109 O HOH A 2252 2555 2.08 REMARK 500 REMARK 500 THIS ENTRY HAS 72 SYMMETRY CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR B 46 -56.27 -134.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2006 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH A2041 DISTANCE = 6.77 ANGSTROMS REMARK 525 HOH A2054 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A2057 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A2061 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A2062 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A2085 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A2086 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A2088 DISTANCE = 7.57 ANGSTROMS REMARK 525 HOH A2107 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A2108 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH A2137 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH A2139 DISTANCE = 6.86 ANGSTROMS REMARK 525 HOH A2141 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH B2027 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH B2034 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH B2039 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH B2040 DISTANCE = 6.85 ANGSTROMS REMARK 525 HOH B2041 DISTANCE = 7.01 ANGSTROMS REMARK 525 HOH B2068 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH B2110 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH B2119 DISTANCE = 6.76 ANGSTROMS REMARK 525 HOH B2172 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH B2279 DISTANCE = 9.68 ANGSTROMS REMARK 525 HOH B2280 DISTANCE = 8.31 ANGSTROMS REMARK 525 HOH B2281 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH B2282 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH B2283 DISTANCE = 8.99 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 113 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP B 113 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CNY RELATED DB: PDB REMARK 900 STRUCTURE OF PII SIGNALING PROTEIN GLNZ FROM AZOSPIRILLUM BRASILENSE REMARK 900 RELATED ID: 4CNZ RELATED DB: PDB REMARK 900 STRUCTURE OF PII SIGNALING PROTEIN GLNZ FROM AZOSPIRILLUM REMARK 900 BRASILENSE IN COMPLEX WITH ADENOSINE DIPHOSPHATE REMARK 900 RELATED ID: 4CO0 RELATED DB: PDB REMARK 900 STRUCTURE OF PII SIGNALING PROTEIN GLNZ FROM AZOSPIRILLUM REMARK 900 BRASILENSE IN COMPLEX WITH ADENOSINE DIPHOSPHATE REMARK 900 RELATED ID: 4CO1 RELATED DB: PDB REMARK 900 STRUCTURE OF PII SIGNALING PROTEIN GLNZ FROM AZOSPIRILLUM REMARK 900 BRASILENSE IN COMPLEX WITH ADENOSINE DIPHOSPHATE REMARK 900 RELATED ID: 4CO2 RELATED DB: PDB REMARK 900 STRUCTURE OF PII SIGNALING PROTEIN GLNZ FROM AZOSPIRILLUM REMARK 900 BRASILENSE IN COMPLEX WITH ADENOSINE DIPHOSPHATE REMARK 900 RELATED ID: 4CO4 RELATED DB: PDB REMARK 900 STRUCTURE OF PII SIGNALING PROTEIN GLNZ FROM AZOSPIRILLUM REMARK 900 BRASILENSE IN COMPLEX WITH ADENOSINE TRIPHOSPHATE REMARK 900 RELATED ID: 4CO5 RELATED DB: PDB REMARK 900 STRUCTURE OF PII SIGNALING PROTEIN GLNZ FROM AZOSPIRILLUM REMARK 900 BRASILENSE IN COMPLEX WITH TARTRATE REMARK 900 RELATED ID: 3MHY RELATED DB: PDB DBREF 4CO3 A 1 112 UNP P70731 P70731_AZOBR 1 112 DBREF 4CO3 B 1 112 UNP P70731 P70731_AZOBR 1 112 SEQRES 1 A 112 MET LYS LEU VAL MET ALA ILE ILE LYS PRO PHE LYS LEU SEQRES 2 A 112 ASP GLU VAL ARG GLU ALA LEU THR SER LEU GLY ILE GLN SEQRES 3 A 112 GLY LEU THR VAL SER GLU VAL LYS GLY PHE GLY ARG GLN SEQRES 4 A 112 LYS GLY GLN THR GLU ILE TYR ARG GLY ALA GLU TYR SER SEQRES 5 A 112 VAL SER PHE LEU PRO LYS VAL LYS VAL GLU VAL ALA VAL SEQRES 6 A 112 SER ASP ASP GLN TYR GLU GLN VAL VAL GLU ALA ILE GLN SEQRES 7 A 112 LYS ALA ALA ASN THR GLY ARG ILE GLY ASP GLY LYS ILE SEQRES 8 A 112 PHE VAL LEU ASP ILE ALA GLN ALA VAL ARG ILE ARG THR SEQRES 9 A 112 GLY GLU THR ASN THR GLU ALA LEU SEQRES 1 B 112 MET LYS LEU VAL MET ALA ILE ILE LYS PRO PHE LYS LEU SEQRES 2 B 112 ASP GLU VAL ARG GLU ALA LEU THR SER LEU GLY ILE GLN SEQRES 3 B 112 GLY LEU THR VAL SER GLU VAL LYS GLY PHE GLY ARG GLN SEQRES 4 B 112 LYS GLY GLN THR GLU ILE TYR ARG GLY ALA GLU TYR SER SEQRES 5 B 112 VAL SER PHE LEU PRO LYS VAL LYS VAL GLU VAL ALA VAL SEQRES 6 B 112 SER ASP ASP GLN TYR GLU GLN VAL VAL GLU ALA ILE GLN SEQRES 7 B 112 LYS ALA ALA ASN THR GLY ARG ILE GLY ASP GLY LYS ILE SEQRES 8 B 112 PHE VAL LEU ASP ILE ALA GLN ALA VAL ARG ILE ARG THR SEQRES 9 B 112 GLY GLU THR ASN THR GLU ALA LEU HET ATP A 113 43 HET ATP B 113 43 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 3 ATP 2(C10 H16 N5 O13 P3) FORMUL 5 HOH *539(H2 O) HELIX 1 1 LYS A 9 PHE A 11 5 3 HELIX 2 2 LYS A 12 LEU A 23 1 12 HELIX 3 3 SER A 66 ASN A 82 1 17 HELIX 4 4 LYS B 12 LEU B 23 1 12 HELIX 5 5 SER B 66 ASN B 82 1 17 SHEET 1 AA 4 THR A 29 LYS A 34 0 SHEET 2 AA 4 PRO A 57 VAL A 65 -1 O LYS A 58 N VAL A 33 SHEET 3 AA 4 LYS A 2 ILE A 8 -1 O LYS A 2 N VAL A 65 SHEET 4 AA 4 LYS A 90 ASP A 95 -1 O LYS A 90 N ILE A 7 SHEET 1 AB 2 THR A 43 ILE A 45 0 SHEET 2 AB 2 GLU A 50 SER A 52 -1 O TYR A 51 N GLU A 44 SHEET 1 BA 4 THR B 29 GLY B 35 0 SHEET 2 BA 4 LEU B 56 VAL B 65 -1 O LEU B 56 N GLY B 35 SHEET 3 BA 4 LYS B 2 ILE B 8 -1 O LYS B 2 N VAL B 65 SHEET 4 BA 4 GLY B 89 ASP B 95 -1 O LYS B 90 N ILE B 7 SHEET 1 BB 2 THR B 43 GLU B 44 0 SHEET 2 BB 2 TYR B 51 SER B 52 -1 O TYR B 51 N GLU B 44 SITE 1 AC1 25 ILE A 7 GLY A 27 LEU A 28 THR A 29 SITE 2 AC1 25 GLY A 35 PHE A 36 GLY A 37 ARG A 38 SITE 3 AC1 25 GLN A 39 LYS A 58 GLU A 62 VAL A 63 SITE 4 AC1 25 ALA A 64 GLY A 87 ASP A 88 GLY A 89 SITE 5 AC1 25 LYS A 90 ARG A 101 ARG A 103 HOH A2129 SITE 6 AC1 25 HOH A2224 HOH A2225 HOH A2226 HOH A2245 SITE 7 AC1 25 HOH A2256 SITE 1 AC2 27 ILE B 7 GLY B 27 LEU B 28 THR B 29 SITE 2 AC2 27 GLY B 35 PHE B 36 ARG B 38 GLN B 39 SITE 3 AC2 27 LYS B 58 GLU B 62 VAL B 63 ALA B 64 SITE 4 AC2 27 ILE B 86 GLY B 87 ASP B 88 GLY B 89 SITE 5 AC2 27 LYS B 90 PHE B 92 ARG B 101 ARG B 103 SITE 6 AC2 27 HOH B2098 HOH B2108 HOH B2109 HOH B2239 SITE 7 AC2 27 HOH B2240 HOH B2241 HOH B2277 CRYST1 85.700 85.700 67.130 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011669 0.006737 0.000000 0.00000 SCALE2 0.000000 0.013474 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014896 0.00000