HEADER SIGNALING PROTEIN 25-JAN-14 4CO4 TITLE STRUCTURE OF PII SIGNALING PROTEIN GLNZ FROM AZOSPIRILLUM BRASILENSE TITLE 2 IN COMPLEX WITH ADENOSINE TRIPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PII-LIKE PROTEIN PZ; COMPND 3 CHAIN: A, B, C SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AZOSPIRILLUM BRASILENSE; SOURCE 3 ORGANISM_TAXID: 192 KEYWDS SIGNALING PROTEIN, GLNK-LIKE EXPDTA X-RAY DIFFRACTION AUTHOR D.TRUAN,X.-D.LI,F.K.WINKLER REVDAT 6 20-DEC-23 4CO4 1 REMARK SHEET REVDAT 5 06-FEB-19 4CO4 1 REMARK REVDAT 4 30-JAN-19 4CO4 1 REMARK REVDAT 3 30-JUL-14 4CO4 1 JRNL REVDAT 2 04-JUN-14 4CO4 1 JRNL REVDAT 1 28-MAY-14 4CO4 0 JRNL AUTH D.TRUAN,S.BJELIC,X.LI,F.K.WINKLER JRNL TITL STRUCTURE AND THERMODYNAMICS OF EFFECTOR MOLECULE BINDING TO JRNL TITL 2 THE NITROGEN SIGNAL TRANSDUCTION PII PROTEIN GLNZ FROM JRNL TITL 3 AZOSPIRILLUM BRASILENSE. JRNL REF J.MOL.BIOL. V. 426 2783 2014 JRNL REFN ISSN 0022-2836 JRNL PMID 24846646 JRNL DOI 10.1016/J.JMB.2014.05.008 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 45974 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2299 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.1765 - 3.7792 0.99 2952 156 0.1763 0.1742 REMARK 3 2 3.7792 - 2.9998 0.99 2815 148 0.1615 0.1680 REMARK 3 3 2.9998 - 2.6207 1.00 2807 148 0.1664 0.1973 REMARK 3 4 2.6207 - 2.3811 1.00 2777 146 0.1519 0.1986 REMARK 3 5 2.3811 - 2.2104 1.00 2773 146 0.1421 0.1961 REMARK 3 6 2.2104 - 2.0801 1.00 2752 145 0.1492 0.2226 REMARK 3 7 2.0801 - 1.9759 1.00 2743 144 0.1510 0.2119 REMARK 3 8 1.9759 - 1.8899 1.00 2776 146 0.1523 0.2054 REMARK 3 9 1.8899 - 1.8171 1.00 2740 145 0.1548 0.2336 REMARK 3 10 1.8171 - 1.7544 1.00 2750 144 0.1551 0.2111 REMARK 3 11 1.7544 - 1.6996 1.00 2716 143 0.1686 0.2415 REMARK 3 12 1.6996 - 1.6510 1.00 2746 145 0.1756 0.2786 REMARK 3 13 1.6510 - 1.6075 1.00 2734 144 0.1905 0.2896 REMARK 3 14 1.6075 - 1.5683 0.99 2685 141 0.2048 0.3026 REMARK 3 15 1.5683 - 1.5327 0.94 2550 134 0.2253 0.2927 REMARK 3 16 1.5327 - 1.5000 0.86 2359 124 0.2446 0.3053 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2191 REMARK 3 ANGLE : 0.932 2985 REMARK 3 CHIRALITY : 0.059 367 REMARK 3 PLANARITY : 0.003 356 REMARK 3 DIHEDRAL : 15.946 812 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CO4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1290059579. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : BARTELS MONOCHROMATOR REMARK 200 OPTICS : VERTICALLY COLLIMATING MIRROR REMARK 200 FOLLOWED BY A BARTELS REMARK 200 MONOCHROMATOR AND A TOROIDAL REMARK 200 MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45979 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 46.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 6.730 REMARK 200 R MERGE (I) : 0.18000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.37 REMARK 200 R MERGE FOR SHELL (I) : 0.69000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4CNY REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15 MM ATP, 0.2 M NACL, 0.1 M PHOSPHATE REMARK 280 CITRATE PH 4.2, 20% PEG 8000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K, PH 5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.84050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.19300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.47500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.19300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.84050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.47500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 37 REMARK 465 ARG A 38 REMARK 465 GLN A 39 REMARK 465 LYS A 40 REMARK 465 GLY A 41 REMARK 465 GLN A 42 REMARK 465 THR A 43 REMARK 465 GLU A 44 REMARK 465 ILE A 45 REMARK 465 TYR A 46 REMARK 465 ARG A 47 REMARK 465 GLY A 48 REMARK 465 ALA A 49 REMARK 465 GLU A 50 REMARK 465 TYR A 51 REMARK 465 SER A 52 REMARK 465 VAL A 53 REMARK 465 SER A 54 REMARK 465 THR A 109 REMARK 465 GLU A 110 REMARK 465 ALA A 111 REMARK 465 LEU A 112 REMARK 465 GLY B 37 REMARK 465 ARG B 38 REMARK 465 GLN B 39 REMARK 465 LYS B 40 REMARK 465 GLY B 41 REMARK 465 GLN B 42 REMARK 465 THR B 43 REMARK 465 GLU B 44 REMARK 465 ILE B 45 REMARK 465 TYR B 46 REMARK 465 ARG B 47 REMARK 465 GLY B 48 REMARK 465 ALA B 49 REMARK 465 GLU B 50 REMARK 465 TYR B 51 REMARK 465 SER B 52 REMARK 465 VAL B 53 REMARK 465 SER B 54 REMARK 465 ALA B 111 REMARK 465 LEU B 112 REMARK 465 GLY C 37 REMARK 465 ARG C 38 REMARK 465 GLN C 39 REMARK 465 LYS C 40 REMARK 465 GLY C 41 REMARK 465 GLN C 42 REMARK 465 THR C 43 REMARK 465 GLU C 44 REMARK 465 ILE C 45 REMARK 465 TYR C 46 REMARK 465 ARG C 47 REMARK 465 GLY C 48 REMARK 465 ALA C 49 REMARK 465 GLU C 50 REMARK 465 TYR C 51 REMARK 465 SER C 52 REMARK 465 VAL C 53 REMARK 465 SER C 54 REMARK 465 THR C 109 REMARK 465 GLU C 110 REMARK 465 ALA C 111 REMARK 465 LEU C 112 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 18 CG CD OE1 OE2 REMARK 470 GLN A 26 CG CD OE1 NE2 REMARK 470 GLU A 32 CG CD OE1 OE2 REMARK 470 LYS A 34 CE NZ REMARK 470 ASP A 68 OD1 OD2 REMARK 470 GLN A 69 CG CD OE1 NE2 REMARK 470 GLU A 75 CD OE1 OE2 REMARK 470 LYS A 79 CD CE NZ REMARK 470 ASN A 108 CG OD1 ND2 REMARK 470 ARG B 17 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 26 CD OE1 NE2 REMARK 470 GLU B 32 OE1 OE2 REMARK 470 LYS B 34 CD CE NZ REMARK 470 LYS B 79 CD CE NZ REMARK 470 ARG B 101 CD NE CZ NH1 NH2 REMARK 470 GLN C 26 CG CD OE1 NE2 REMARK 470 LYS C 34 CD CE NZ REMARK 470 GLU C 75 CG CD OE1 OE2 REMARK 470 LYS C 79 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2064 O HOH B 2109 1.85 REMARK 500 O HOH C 2082 O HOH C 2086 1.89 REMARK 500 O HOH B 2062 O HOH B 2069 1.93 REMARK 500 OE1 GLU A 15 O HOH A 2029 2.03 REMARK 500 OE1 GLU A 15 O HOH A 2029 2.05 REMARK 500 O HOH C 2051 O HOH C 2055 2.06 REMARK 500 O HOH A 2020 O HOH A 2074 2.08 REMARK 500 O HOH B 2013 O HOH B 2030 2.09 REMARK 500 NE2 GLN B 72 O HOH B 2067 2.11 REMARK 500 OE1 GLU C 71 O HOH B 2097 2.13 REMARK 500 O HOH C 2020 O HOH C 2046 2.13 REMARK 500 O HOH A 2109 O HOH A 2110 2.14 REMARK 500 O HOH A 2009 O HOH A 2010 2.14 REMARK 500 OD2 ASP A 95 O HOH A 2099 2.15 REMARK 500 O HOH B 2022 O HOH B 2024 2.15 REMARK 500 O HOH B 2069 O HOH B 2070 2.16 REMARK 500 O HOH A 2008 O HOH A 2010 2.16 REMARK 500 O HOH B 2008 O HOH B 2027 2.16 REMARK 500 N PHE A 55 O HOH A 2060 2.17 REMARK 500 OD1 ASP B 14 O HOH B 2023 2.19 REMARK 500 O HOH A 2003 O HOH A 2004 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2099 O HOH B 2101 4455 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN C 26 -51.33 73.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2040 DISTANCE = 6.59 ANGSTROMS REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 120 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP B 120 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP C 120 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 1111 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1110 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CNY RELATED DB: PDB REMARK 900 STRUCTURE OF PII SIGNALING PROTEIN GLNZ FROM AZOSPIRILLUM BRASILENSE REMARK 900 RELATED ID: 4CNZ RELATED DB: PDB REMARK 900 STRUCTURE OF PII SIGNALING PROTEIN GLNZ FROM AZOSPIRILLUM REMARK 900 BRASILENSE IN COMPLEX WITH ADENOSINE DIPHOSPHATE REMARK 900 RELATED ID: 4CO0 RELATED DB: PDB REMARK 900 STRUCTURE OF PII SIGNALING PROTEIN GLNZ FROM AZOSPIRILLUM REMARK 900 BRASILENSE IN COMPLEX WITH ADENOSINE DIPHOSPHATE REMARK 900 RELATED ID: 4CO1 RELATED DB: PDB REMARK 900 STRUCTURE OF PII SIGNALING PROTEIN GLNZ FROM AZOSPIRILLUM REMARK 900 BRASILENSE IN COMPLEX WITH ADENOSINE DIPHOSPHATE REMARK 900 RELATED ID: 4CO2 RELATED DB: PDB REMARK 900 STRUCTURE OF PII SIGNALING PROTEIN GLNZ FROM AZOSPIRILLUM REMARK 900 BRASILENSE IN COMPLEX WITH ADENOSINE DIPHOSPHATE REMARK 900 RELATED ID: 4CO3 RELATED DB: PDB REMARK 900 STRUCTURE OF PII SIGNALING PROTEIN GLNZ FROM AZOSPIRILLUM REMARK 900 BRASILENSE IN COMPLEX WITH ADENOSINE TRIPHOSPHATE REMARK 900 RELATED ID: 4CO5 RELATED DB: PDB REMARK 900 STRUCTURE OF PII SIGNALING PROTEIN GLNZ FROM AZOSPIRILLUM REMARK 900 BRASILENSE IN COMPLEX WITH TARTRATE REMARK 900 RELATED ID: 3MHY RELATED DB: PDB REMARK 900 A NEW PII PROTEIN STRUCTURE DBREF 4CO4 A 1 112 UNP P70731 P70731_AZOBR 1 112 DBREF 4CO4 B 1 112 UNP P70731 P70731_AZOBR 1 112 DBREF 4CO4 C 1 112 UNP P70731 P70731_AZOBR 1 112 SEQRES 1 A 112 MET LYS LEU VAL MET ALA ILE ILE LYS PRO PHE LYS LEU SEQRES 2 A 112 ASP GLU VAL ARG GLU ALA LEU THR SER LEU GLY ILE GLN SEQRES 3 A 112 GLY LEU THR VAL SER GLU VAL LYS GLY PHE GLY ARG GLN SEQRES 4 A 112 LYS GLY GLN THR GLU ILE TYR ARG GLY ALA GLU TYR SER SEQRES 5 A 112 VAL SER PHE LEU PRO LYS VAL LYS VAL GLU VAL ALA VAL SEQRES 6 A 112 SER ASP ASP GLN TYR GLU GLN VAL VAL GLU ALA ILE GLN SEQRES 7 A 112 LYS ALA ALA ASN THR GLY ARG ILE GLY ASP GLY LYS ILE SEQRES 8 A 112 PHE VAL LEU ASP ILE ALA GLN ALA VAL ARG ILE ARG THR SEQRES 9 A 112 GLY GLU THR ASN THR GLU ALA LEU SEQRES 1 B 112 MET LYS LEU VAL MET ALA ILE ILE LYS PRO PHE LYS LEU SEQRES 2 B 112 ASP GLU VAL ARG GLU ALA LEU THR SER LEU GLY ILE GLN SEQRES 3 B 112 GLY LEU THR VAL SER GLU VAL LYS GLY PHE GLY ARG GLN SEQRES 4 B 112 LYS GLY GLN THR GLU ILE TYR ARG GLY ALA GLU TYR SER SEQRES 5 B 112 VAL SER PHE LEU PRO LYS VAL LYS VAL GLU VAL ALA VAL SEQRES 6 B 112 SER ASP ASP GLN TYR GLU GLN VAL VAL GLU ALA ILE GLN SEQRES 7 B 112 LYS ALA ALA ASN THR GLY ARG ILE GLY ASP GLY LYS ILE SEQRES 8 B 112 PHE VAL LEU ASP ILE ALA GLN ALA VAL ARG ILE ARG THR SEQRES 9 B 112 GLY GLU THR ASN THR GLU ALA LEU SEQRES 1 C 112 MET LYS LEU VAL MET ALA ILE ILE LYS PRO PHE LYS LEU SEQRES 2 C 112 ASP GLU VAL ARG GLU ALA LEU THR SER LEU GLY ILE GLN SEQRES 3 C 112 GLY LEU THR VAL SER GLU VAL LYS GLY PHE GLY ARG GLN SEQRES 4 C 112 LYS GLY GLN THR GLU ILE TYR ARG GLY ALA GLU TYR SER SEQRES 5 C 112 VAL SER PHE LEU PRO LYS VAL LYS VAL GLU VAL ALA VAL SEQRES 6 C 112 SER ASP ASP GLN TYR GLU GLN VAL VAL GLU ALA ILE GLN SEQRES 7 C 112 LYS ALA ALA ASN THR GLY ARG ILE GLY ASP GLY LYS ILE SEQRES 8 C 112 PHE VAL LEU ASP ILE ALA GLN ALA VAL ARG ILE ARG THR SEQRES 9 C 112 GLY GLU THR ASN THR GLU ALA LEU HET ATP A 120 36 HET PO4 A1109 5 HET PO4 A1110 5 HET ATP B 120 36 HET PO4 B1111 5 HET AMP C 120 23 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM PO4 PHOSPHATE ION HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 4 ATP 2(C10 H16 N5 O13 P3) FORMUL 5 PO4 3(O4 P 3-) FORMUL 9 AMP C10 H14 N5 O7 P FORMUL 10 HOH *320(H2 O) HELIX 1 1 LYS A 9 PHE A 11 5 3 HELIX 2 2 LYS A 12 LEU A 23 1 12 HELIX 3 3 GLN A 69 ASN A 82 1 14 HELIX 4 4 LYS B 9 PHE B 11 5 3 HELIX 5 5 LYS B 12 LEU B 23 1 12 HELIX 6 6 GLN B 69 ASN B 82 1 14 HELIX 7 7 LYS C 9 PHE C 11 5 3 HELIX 8 8 LYS C 12 LEU C 23 1 12 HELIX 9 9 GLN C 69 ASN C 82 1 14 SHEET 1 AA 6 GLN A 98 ARG A 101 0 SHEET 2 AA 6 LYS B 90 ASP B 95 -1 O ILE B 91 N VAL A 100 SHEET 3 AA 6 LYS B 2 ILE B 8 -1 O LEU B 3 N LEU B 94 SHEET 4 AA 6 LEU B 56 VAL B 65 -1 O VAL B 59 N ILE B 8 SHEET 5 AA 6 THR B 29 PHE B 36 -1 O THR B 29 N GLU B 62 SHEET 6 AA 6 LEU A 28 PHE A 36 -1 O LEU A 28 N PHE B 36 SHEET 1 AB 2 GLN A 98 ARG A 101 0 SHEET 2 AB 2 LEU C 28 GLY C 35 1 O LYS C 34 N VAL B 30 SITE 1 AC1 20 ILE A 7 GLY A 35 PHE A 36 LYS A 58 SITE 2 AC1 20 ILE A 86 GLY A 87 ASP A 88 GLY A 89 SITE 3 AC1 20 LYS A 90 HOH A2094 HOH A2095 HOH A2120 SITE 4 AC1 20 GLY C 27 LEU C 28 THR C 29 GLU C 62 SITE 5 AC1 20 VAL C 63 ALA C 64 ARG C 101 ARG C 103 SITE 1 AC2 21 GLY A 27 LEU A 28 THR A 29 GLU A 62 SITE 2 AC2 21 VAL A 63 ALA A 64 ARG A 101 ARG A 103 SITE 3 AC2 21 HOH A2041 HOH A2111 ILE B 7 GLY B 35 SITE 4 AC2 21 PHE B 36 ILE B 86 GLY B 87 ASP B 88 SITE 5 AC2 21 GLY B 89 LYS B 90 HOH B2090 HOH B2106 SITE 6 AC2 21 HOH B2107 SITE 1 AC3 16 GLY B 27 LEU B 28 THR B 29 VAL B 63 SITE 2 AC3 16 ALA B 64 PO4 B1111 ILE C 7 GLY C 35 SITE 3 AC3 16 LYS C 58 GLY C 87 ASP C 88 GLY C 89 SITE 4 AC3 16 LYS C 90 HOH C2051 HOH C2055 HOH C2090 SITE 1 AC4 5 ARG B 103 ILE C 86 GLY C 87 ASP C 88 SITE 2 AC4 5 AMP C 120 SITE 1 AC5 9 SER A 31 VAL A 33 LYS A 60 PO4 A1110 SITE 2 AC5 9 SER B 31 LYS B 60 SER C 31 VAL C 33 SITE 3 AC5 9 LYS C 60 SITE 1 AC6 10 MET A 5 LYS A 60 GLU A 62 PO4 A1109 SITE 2 AC6 10 MET B 5 LYS B 60 GLU B 62 MET C 5 SITE 3 AC6 10 LYS C 60 GLU C 62 CRYST1 53.681 58.950 90.386 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018629 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016964 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011064 0.00000