HEADER CHAPERONE 06-FEB-14 4CPG TITLE SOLUTION STRUCTURE OF THE SGTA N-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SMALL GLUTAMINE-RICH TETRATRICOPEPTIDE REPEAT-CONTAINING COMPND 3 PROTEIN ALPHA; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: N-TERMINAL DOMAIN, RESIDUES 1-69; COMPND 6 SYNONYM: ALPHA-SGT, VPU-BINDING PROTEIN, UBP; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: N-TERMINAL DIMERISATION DOMAIN OF SGTA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET46 KEYWDS CHAPERONE, SGTA, TAIL-ANCHORED, GET PATHWAY, MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.F.DARBY,E.M.KRYSZTOFINSKA,P.J.SIMPSON,R.L.ISAACSON REVDAT 3 14-FEB-18 4CPG 1 REMARK ATOM REVDAT 2 07-FEB-18 4CPG 1 JRNL REMARK REVDAT 1 03-DEC-14 4CPG 0 JRNL AUTH J.F.DARBY,E.M.KRYSZTOFINSKA,P.J.SIMPSON,A.C.SIMON, JRNL AUTH 2 P.LEZNICKI,N.SRISKANDARAJAH,D.S.BISHOP,L.R.HALE,C.ALFANO, JRNL AUTH 3 M.R.CONTE,S.MARTINEZ-LUMBRERAS,A.THAPALIYA,S.HIGH, JRNL AUTH 4 R.L.ISAACSON JRNL TITL SOLUTION STRUCTURE OF THE SGTA DIMERISATION DOMAIN AND JRNL TITL 2 INVESTIGATION OF ITS INTERACTIONS WITH THE UBIQUITIN-LIKE JRNL TITL 3 DOMAINS OF BAG6 AND UBL4A. JRNL REF PLOS ONE V. 9 11328 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 25415308 JRNL DOI 10.1371/JOURNAL.PONE.0113281 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : A.T.BRUNGER,P.D.ADAMS,G.M.CLORE,W.L. REMARK 3 DELANO,P.GROS, R.W.GROSSE-KUNSTLEVE,J.-S. JIANG, REMARK 3 J.KUSZEWSKI, M.NILGES,N.S.PANNU,R.J. READ,L.M.RICE, REMARK 3 T.SIMONSON,G.L.WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CPG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1290058490. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303.0 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 250 REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 90% H2O/10% D2O; 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HNCO; 3D HN(CA)CO; REMARK 210 3D HBHA(CO)NH; 3D H(CCCO)NH; 3D REMARK 210 (H)CCCONH; 3D 1H-15N NOESY; 3D REMARK 210 HCCH-TOCSY; 3D 1H-13C NOESY; 3D REMARK 210 F1 1H(13C; 15N)-REJECT 13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 950 MHZ; 800 MHZ; 700 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; HOME-BUILT REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, TALOS, ARIA REMARK 210 METHOD USED : ARIA REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING TRIPLE- RESONANCE NMR REMARK 210 SPECTROSCOPY ON 13C, 15N-LABELED DIMERIC SGTA_NT REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 VAL A 9 REMARK 465 ASP A 10 REMARK 465 ASP A 11 REMARK 465 ASP A 12 REMARK 465 ASP A 13 REMARK 465 LYS A 14 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 VAL B 9 REMARK 465 ASP B 10 REMARK 465 ASP B 11 REMARK 465 ASP B 12 REMARK 465 ASP B 13 REMARK 465 LYS B 14 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 2 ASP A 16 78.11 -114.36 REMARK 500 2 ASP B 16 77.99 -114.34 REMARK 500 3 LEU A 38 -106.13 -99.77 REMARK 500 3 LEU B 38 -107.12 -99.74 REMARK 500 5 LEU A 66 31.37 -88.00 REMARK 500 5 ALA A 67 150.18 -47.54 REMARK 500 6 SER A 39 -176.66 -69.64 REMARK 500 6 LEU A 66 31.01 -87.88 REMARK 500 6 SER B 39 -176.46 -69.82 REMARK 500 6 ALA B 67 152.66 -48.30 REMARK 500 9 LEU B 66 27.03 -79.50 REMARK 500 11 LEU A 66 27.46 -78.93 REMARK 500 11 LEU B 66 26.66 -78.67 REMARK 500 13 ALA A 79 -61.15 -93.19 REMARK 500 13 LEU B 66 27.11 -79.99 REMARK 500 13 ALA B 79 -61.25 -91.89 REMARK 500 14 ALA A 67 -164.23 45.71 REMARK 500 14 ALA B 67 -164.06 43.91 REMARK 500 15 VAL A 59 -144.26 -137.51 REMARK 500 15 THR A 60 -167.24 -41.54 REMARK 500 15 VAL A 61 -38.30 9.61 REMARK 500 15 LEU A 66 30.72 -85.46 REMARK 500 15 ALA A 67 153.43 -48.23 REMARK 500 15 VAL B 59 -150.89 -139.51 REMARK 500 15 THR B 60 -160.90 -50.59 REMARK 500 15 VAL B 61 -17.73 -18.34 REMARK 500 15 ALA B 67 153.05 -46.23 REMARK 500 16 PHE A 57 66.23 -153.02 REMARK 500 16 VAL A 59 -167.51 -74.16 REMARK 500 16 PHE B 57 49.25 -148.12 REMARK 500 17 ASP A 16 76.92 -112.05 REMARK 500 17 ASP A 63 -86.87 -31.61 REMARK 500 17 ASP B 16 77.33 -112.04 REMARK 500 17 ASP B 63 -83.51 -41.14 REMARK 500 18 GLU A 62 12.38 -147.12 REMARK 500 18 ASP A 63 -86.39 -8.31 REMARK 500 18 SER A 64 -35.27 -138.54 REMARK 500 18 GLU B 62 18.09 -147.52 REMARK 500 18 ASP B 63 -82.34 -29.28 REMARK 500 19 ALA A 67 109.78 -30.19 REMARK 500 19 LEU A 68 -143.80 -127.15 REMARK 500 19 PRO A 69 24.05 -32.92 REMARK 500 19 GLN A 70 -168.48 -57.40 REMARK 500 19 PRO A 73 -36.98 -30.68 REMARK 500 19 ALA B 67 109.07 -29.44 REMARK 500 19 LEU B 68 -156.32 -128.31 REMARK 500 19 PRO B 69 20.18 -26.00 REMARK 500 19 GLN B 70 -168.18 -61.64 REMARK 500 19 PRO B 73 -36.12 -30.54 REMARK 500 20 LEU A 38 -100.23 -89.25 REMARK 500 REMARK 500 THIS ENTRY HAS 59 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 60 VAL A 61 15 -134.88 REMARK 500 THR B 60 VAL B 61 15 -114.28 REMARK 500 ALA B 56 PHE B 57 16 -141.15 REMARK 500 PHE B 57 GLY B 58 16 -148.13 REMARK 500 GLU A 62 ASP A 63 17 -134.08 REMARK 500 GLU B 62 ASP B 63 17 -125.25 REMARK 500 GLU A 62 ASP A 63 18 -132.56 REMARK 500 GLU B 62 ASP B 63 18 -117.83 REMARK 500 ASP B 63 SER B 64 18 147.22 REMARK 500 LEU A 68 PRO A 69 19 147.07 REMARK 500 LEU B 68 PRO B 69 19 149.04 REMARK 500 VAL A 59 THR A 60 20 146.39 REMARK 500 VAL B 59 THR B 60 20 142.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19779 RELATED DB: BMRB DBREF 4CPG A 15 83 UNP O43765 SGTA_HUMAN 1 69 DBREF 4CPG B 15 83 UNP O43765 SGTA_HUMAN 1 69 SEQADV 4CPG MET A 1 UNP O43765 EXPRESSION TAG SEQADV 4CPG ALA A 2 UNP O43765 EXPRESSION TAG SEQADV 4CPG HIS A 3 UNP O43765 EXPRESSION TAG SEQADV 4CPG HIS A 4 UNP O43765 EXPRESSION TAG SEQADV 4CPG HIS A 5 UNP O43765 EXPRESSION TAG SEQADV 4CPG HIS A 6 UNP O43765 EXPRESSION TAG SEQADV 4CPG HIS A 7 UNP O43765 EXPRESSION TAG SEQADV 4CPG HIS A 8 UNP O43765 EXPRESSION TAG SEQADV 4CPG VAL A 9 UNP O43765 EXPRESSION TAG SEQADV 4CPG ASP A 10 UNP O43765 EXPRESSION TAG SEQADV 4CPG ASP A 11 UNP O43765 EXPRESSION TAG SEQADV 4CPG ASP A 12 UNP O43765 EXPRESSION TAG SEQADV 4CPG ASP A 13 UNP O43765 EXPRESSION TAG SEQADV 4CPG LYS A 14 UNP O43765 EXPRESSION TAG SEQADV 4CPG MET B 1 UNP O43765 EXPRESSION TAG SEQADV 4CPG ALA B 2 UNP O43765 EXPRESSION TAG SEQADV 4CPG HIS B 3 UNP O43765 EXPRESSION TAG SEQADV 4CPG HIS B 4 UNP O43765 EXPRESSION TAG SEQADV 4CPG HIS B 5 UNP O43765 EXPRESSION TAG SEQADV 4CPG HIS B 6 UNP O43765 EXPRESSION TAG SEQADV 4CPG HIS B 7 UNP O43765 EXPRESSION TAG SEQADV 4CPG HIS B 8 UNP O43765 EXPRESSION TAG SEQADV 4CPG VAL B 9 UNP O43765 EXPRESSION TAG SEQADV 4CPG ASP B 10 UNP O43765 EXPRESSION TAG SEQADV 4CPG ASP B 11 UNP O43765 EXPRESSION TAG SEQADV 4CPG ASP B 12 UNP O43765 EXPRESSION TAG SEQADV 4CPG ASP B 13 UNP O43765 EXPRESSION TAG SEQADV 4CPG LYS B 14 UNP O43765 EXPRESSION TAG SEQRES 1 A 83 MET ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP ASP SEQRES 2 A 83 LYS MET ASP ASN LYS LYS ARG LEU ALA TYR ALA ILE ILE SEQRES 3 A 83 GLN PHE LEU HIS ASP GLN LEU ARG HIS GLY GLY LEU SER SEQRES 4 A 83 SER ASP ALA GLN GLU SER LEU GLU VAL ALA ILE GLN CYS SEQRES 5 A 83 LEU GLU THR ALA PHE GLY VAL THR VAL GLU ASP SER ASP SEQRES 6 A 83 LEU ALA LEU PRO GLN THR LEU PRO GLU ILE PHE GLU ALA SEQRES 7 A 83 ALA ALA THR GLY LYS SEQRES 1 B 83 MET ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP ASP SEQRES 2 B 83 LYS MET ASP ASN LYS LYS ARG LEU ALA TYR ALA ILE ILE SEQRES 3 B 83 GLN PHE LEU HIS ASP GLN LEU ARG HIS GLY GLY LEU SER SEQRES 4 B 83 SER ASP ALA GLN GLU SER LEU GLU VAL ALA ILE GLN CYS SEQRES 5 B 83 LEU GLU THR ALA PHE GLY VAL THR VAL GLU ASP SER ASP SEQRES 6 B 83 LEU ALA LEU PRO GLN THR LEU PRO GLU ILE PHE GLU ALA SEQRES 7 B 83 ALA ALA THR GLY LYS HELIX 1 1 ASP A 16 GLY A 36 1 21 HELIX 2 2 SER A 39 PHE A 57 1 19 HELIX 3 3 VAL A 61 LEU A 66 1 6 HELIX 4 4 THR A 71 ALA A 80 1 10 HELIX 5 5 ASP B 16 GLY B 36 1 21 HELIX 6 6 SER B 39 PHE B 57 1 19 HELIX 7 7 VAL B 61 LEU B 66 1 6 HELIX 8 8 THR B 71 ALA B 80 1 10 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1