HEADER OXIDOREDUCTASE 11-MAR-14 4CSW TITLE RHODOTHERMUS MARINUS YCFD-LIKE RIBOSOMAL PROTEIN L16 ARGINYL TITLE 2 HYDROXYLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CUPIN 4 FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RIBOSOMAL PROTEIN L16 ARGINYL HYDROXYLASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOTHERMUS MARINUS; SOURCE 3 ORGANISM_TAXID: 518766; SOURCE 4 STRAIN: DSM 4252; SOURCE 5 ATCC: 43812; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS OXIDOREDUCTASE, 2-OXOGLUTARATE AND IRON DEPENDENT OXYGENASE, DOUBLE KEYWDS 2 STRANDED BETA HELIX FOLD EXPDTA X-RAY DIFFRACTION AUTHOR M.A.MCDONOUGH,R.SEKIRNIK,C.J.SCHOFIELD REVDAT 6 20-DEC-23 4CSW 1 REMARK LINK REVDAT 5 21-FEB-18 4CSW 1 JRNL REVDAT 4 25-JUN-14 4CSW 1 JRNL REVDAT 3 21-MAY-14 4CSW 1 JRNL REVDAT 2 14-MAY-14 4CSW 1 JRNL REVDAT 1 09-APR-14 4CSW 0 JRNL AUTH R.CHOWDHURY,R.SEKIRNIK,N.C.BRISSETT,T.KROJER,C.H.HO,S.S.NG, JRNL AUTH 2 I.J.CLIFTON,W.GE,N.J.KERSHAW,G.C.FOX,J.R.C.MUNIZ,M.VOLLMAR, JRNL AUTH 3 C.PHILLIPS,E.S.PILKA,K.L.KAVANAGH,F.VON DELFT,U.OPPERMANN, JRNL AUTH 4 M.A.MCDONOUGH,A.J.DOHERTY,C.J.SCHOFIELD JRNL TITL RIBOSOMAL OXYGENASES ARE STRUCTURALLY CONSERVED FROM JRNL TITL 2 PROKARYOTES TO HUMANS. JRNL REF NATURE V. 510 422 2014 JRNL REFN ESSN 1476-4687 JRNL PMID 24814345 JRNL DOI 10.1038/NATURE13263 REMARK 2 REMARK 2 RESOLUTION. 2.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 27487 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.200 REMARK 3 FREE R VALUE TEST SET COUNT : 3767 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.2075 - 8.4030 0.97 1823 141 0.1381 0.1505 REMARK 3 2 8.4030 - 6.6936 0.99 1818 139 0.1523 0.1997 REMARK 3 3 6.6936 - 5.8545 0.98 1833 143 0.1580 0.1922 REMARK 3 4 5.8545 - 5.3224 0.99 1809 144 0.1388 0.1873 REMARK 3 5 5.3224 - 4.9427 0.99 1841 142 0.1222 0.1444 REMARK 3 6 4.9427 - 4.6524 0.99 1833 141 0.1149 0.1615 REMARK 3 7 4.6524 - 4.4201 0.99 1856 145 0.1159 0.1340 REMARK 3 8 4.4201 - 4.2282 0.98 1819 142 0.1255 0.1913 REMARK 3 9 4.2282 - 4.0659 0.98 1801 143 0.1454 0.1934 REMARK 3 10 4.0659 - 3.9259 0.97 1729 138 0.1498 0.1861 REMARK 3 11 3.9259 - 3.8034 0.96 1823 142 0.1515 0.1995 REMARK 3 12 3.8034 - 3.6948 0.95 1762 136 0.1779 0.2217 REMARK 3 13 3.6948 - 3.5977 0.94 1719 132 0.2057 0.2894 REMARK 3 14 3.5977 - 3.5101 0.95 1807 135 0.2014 0.2279 REMARK 3 15 3.5101 - 3.4304 0.96 1803 136 0.1932 0.2615 REMARK 3 16 3.4304 - 3.3575 0.95 1711 136 0.2094 0.2829 REMARK 3 17 3.3575 - 3.2904 0.96 1825 145 0.2132 0.2979 REMARK 3 18 3.2904 - 3.2284 0.95 1672 126 0.2227 0.2757 REMARK 3 19 3.2284 - 3.1708 0.95 1833 143 0.2349 0.2798 REMARK 3 20 3.1708 - 3.1171 0.97 1792 141 0.2493 0.2668 REMARK 3 21 3.1171 - 3.0669 0.97 1796 138 0.2650 0.3549 REMARK 3 22 3.0669 - 3.0197 0.97 1738 135 0.2756 0.2884 REMARK 3 23 3.0197 - 2.9754 0.97 1860 145 0.2681 0.2823 REMARK 3 24 2.9754 - 2.9335 0.97 1755 138 0.2857 0.3164 REMARK 3 25 2.9335 - 2.8939 0.96 1817 138 0.3098 0.3787 REMARK 3 26 2.8939 - 2.8563 0.97 1811 141 0.3031 0.2934 REMARK 3 27 2.8563 - 2.8206 0.97 1783 142 0.3207 0.3916 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 78.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6298 REMARK 3 ANGLE : 0.818 8628 REMARK 3 CHIRALITY : 0.030 945 REMARK 3 PLANARITY : 0.005 1137 REMARK 3 DIHEDRAL : 16.063 2333 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 2 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1792 19.6764 30.6365 REMARK 3 T TENSOR REMARK 3 T11: 0.4528 T22: 0.4957 REMARK 3 T33: 0.5180 T12: 0.0944 REMARK 3 T13: -0.0008 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 1.3626 L22: 0.8242 REMARK 3 L33: 3.7205 L12: 0.3315 REMARK 3 L13: 0.0390 L23: -0.6754 REMARK 3 S TENSOR REMARK 3 S11: -0.0293 S12: -0.1238 S13: -0.2534 REMARK 3 S21: 0.0162 S22: 0.0374 S23: -0.0210 REMARK 3 S31: 0.3181 S32: 0.1262 S33: 0.0051 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 229 THROUGH 290 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.7692 41.8409 8.7154 REMARK 3 T TENSOR REMARK 3 T11: 0.5910 T22: 0.4763 REMARK 3 T33: 0.4090 T12: 0.0096 REMARK 3 T13: 0.0443 T23: -0.0269 REMARK 3 L TENSOR REMARK 3 L11: 4.3835 L22: 1.4157 REMARK 3 L33: 0.7654 L12: -0.4598 REMARK 3 L13: 0.2750 L23: -0.8720 REMARK 3 S TENSOR REMARK 3 S11: -0.0395 S12: 0.4389 S13: 0.2777 REMARK 3 S21: -0.1542 S22: -0.0472 S23: -0.0770 REMARK 3 S31: 0.1351 S32: 0.1042 S33: 0.1178 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 291 THROUGH 389 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.8677 48.2578 22.1452 REMARK 3 T TENSOR REMARK 3 T11: 0.5241 T22: 0.6066 REMARK 3 T33: 0.6614 T12: -0.0871 REMARK 3 T13: -0.0282 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 3.3016 L22: 2.6456 REMARK 3 L33: 1.6738 L12: 0.7740 REMARK 3 L13: 1.6553 L23: 1.0202 REMARK 3 S TENSOR REMARK 3 S11: -0.2112 S12: 0.1966 S13: 0.4678 REMARK 3 S21: 0.0029 S22: 0.0969 S23: -0.4108 REMARK 3 S31: -0.4188 S32: 0.3743 S33: 0.0562 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND (RESID 2 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.7164 61.6328 13.9330 REMARK 3 T TENSOR REMARK 3 T11: 0.6015 T22: 0.5447 REMARK 3 T33: 0.7007 T12: 0.0904 REMARK 3 T13: -0.0608 T23: -0.0394 REMARK 3 L TENSOR REMARK 3 L11: 2.3923 L22: 3.5175 REMARK 3 L33: 2.2367 L12: 0.4840 REMARK 3 L13: -0.5701 L23: 0.4938 REMARK 3 S TENSOR REMARK 3 S11: -0.0842 S12: -0.2114 S13: 0.5654 REMARK 3 S21: 0.2725 S22: -0.0585 S23: 0.4768 REMARK 3 S31: -0.3919 S32: 0.0403 S33: 0.1288 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND (RESID 204 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.0178 36.4859 11.2779 REMARK 3 T TENSOR REMARK 3 T11: 0.5132 T22: 0.6530 REMARK 3 T33: 0.5061 T12: 0.0007 REMARK 3 T13: 0.0217 T23: -0.0313 REMARK 3 L TENSOR REMARK 3 L11: 2.8894 L22: 1.5284 REMARK 3 L33: 0.1505 L12: -1.4589 REMARK 3 L13: 0.4685 L23: -0.0967 REMARK 3 S TENSOR REMARK 3 S11: -0.0537 S12: -0.1696 S13: -0.1033 REMARK 3 S21: -0.0486 S22: 0.1198 S23: 0.0657 REMARK 3 S31: -0.0544 S32: 0.1234 S33: -0.0474 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESID 267 THROUGH 389 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.5780 31.2074 14.4786 REMARK 3 T TENSOR REMARK 3 T11: 0.6057 T22: 0.5122 REMARK 3 T33: 0.4863 T12: -0.0374 REMARK 3 T13: 0.0183 T23: -0.0404 REMARK 3 L TENSOR REMARK 3 L11: 3.4025 L22: 2.2189 REMARK 3 L33: 3.2069 L12: 1.0444 REMARK 3 L13: -1.1997 L23: -1.2442 REMARK 3 S TENSOR REMARK 3 S11: -0.0736 S12: 0.0367 S13: -0.1413 REMARK 3 S21: -0.1287 S22: 0.0326 S23: 0.0621 REMARK 3 S31: 0.5077 S32: -0.3350 S33: 0.0275 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CSW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1290059943. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27522 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.820 REMARK 200 RESOLUTION RANGE LOW (A) : 30.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4CCL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.66MM PROTEIN, 1MM MNCL2, 2MM IOX3, REMARK 280 50%(V/V) TACSIMATE, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 79.15000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.84500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 79.15000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 43.84500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2063 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ARG A 390 REMARK 465 LYS A 391 REMARK 465 ARG A 392 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ARG B 390 REMARK 465 LYS B 391 REMARK 465 ARG B 392 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 5 CG CD OE1 OE2 REMARK 470 GLU A 77 CD OE1 OE2 REMARK 470 GLU A 106 OE1 OE2 REMARK 470 GLU A 158 CG CD OE1 OE2 REMARK 470 GLU A 161 CD OE1 OE2 REMARK 470 GLU A 167 CG CD OE1 OE2 REMARK 470 GLU A 175 CD OE1 OE2 REMARK 470 ASP A 245 CG OD1 OD2 REMARK 470 GLU A 290 CG CD OE1 OE2 REMARK 470 ARG A 294 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 343 CD OE1 OE2 REMARK 470 ASP A 370 CG OD1 OD2 REMARK 470 GLU B 42 CD OE1 OE2 REMARK 470 GLU B 51 CG CD OE1 OE2 REMARK 470 GLU B 77 CG CD OE1 OE2 REMARK 470 GLU B 100 CG CD OE1 OE2 REMARK 470 GLU B 126 CG CD OE1 OE2 REMARK 470 ARG B 155 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 158 CG CD OE1 OE2 REMARK 470 ARG B 159 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 161 CD OE1 OE2 REMARK 470 ARG B 169 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 173 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 175 OE1 OE2 REMARK 470 GLU B 183 CG CD OE1 OE2 REMARK 470 ASP B 245 CG OD1 OD2 REMARK 470 GLU B 290 CG CD OE1 OE2 REMARK 470 LYS B 299 CE NZ REMARK 470 ARG B 303 NE CZ NH1 NH2 REMARK 470 GLU B 360 OE1 OE2 REMARK 470 GLU B 367 OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 212 OE2 GLU A 218 2.15 REMARK 500 O LEU A 265 O HOH A 2062 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 20 -42.09 -132.60 REMARK 500 LYS A 23 -66.76 -139.94 REMARK 500 ASP A 117 -75.45 -104.27 REMARK 500 GLU A 202 -172.76 -174.05 REMARK 500 ARG A 285 -140.67 -130.47 REMARK 500 TYR B 20 -39.73 -137.60 REMARK 500 LYS B 23 -65.47 -130.05 REMARK 500 ALA B 81 47.12 -90.10 REMARK 500 ASP B 117 -74.25 -109.78 REMARK 500 TRP B 145 145.19 -171.53 REMARK 500 GLU B 167 18.27 47.33 REMARK 500 ARG B 169 100.55 -58.15 REMARK 500 ASP B 203 105.93 -55.64 REMARK 500 ARG B 285 -136.40 -117.39 REMARK 500 LEU B 287 79.14 -116.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B1390 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 133 NE2 REMARK 620 2 ASP B 135 OD2 101.5 REMARK 620 3 HIS B 196 NE2 83.3 98.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 1390 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UN9 A 1391 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UN9 A 1392 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1393 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 1390 DBREF 4CSW A 1 392 UNP D0MK34 D0MK34_RHOM4 1 392 DBREF 4CSW B 1 392 UNP D0MK34 D0MK34_RHOM4 1 392 SEQADV 4CSW HIS A -13 UNP D0MK34 EXPRESSION TAG SEQADV 4CSW HIS A -12 UNP D0MK34 EXPRESSION TAG SEQADV 4CSW HIS A -11 UNP D0MK34 EXPRESSION TAG SEQADV 4CSW HIS A -10 UNP D0MK34 EXPRESSION TAG SEQADV 4CSW SER A -9 UNP D0MK34 EXPRESSION TAG SEQADV 4CSW SER A -8 UNP D0MK34 EXPRESSION TAG SEQADV 4CSW GLY A -7 UNP D0MK34 EXPRESSION TAG SEQADV 4CSW LEU A -6 UNP D0MK34 EXPRESSION TAG SEQADV 4CSW VAL A -5 UNP D0MK34 EXPRESSION TAG SEQADV 4CSW PRO A -4 UNP D0MK34 EXPRESSION TAG SEQADV 4CSW ARG A -3 UNP D0MK34 EXPRESSION TAG SEQADV 4CSW GLY A -2 UNP D0MK34 EXPRESSION TAG SEQADV 4CSW SER A -1 UNP D0MK34 EXPRESSION TAG SEQADV 4CSW HIS A 0 UNP D0MK34 EXPRESSION TAG SEQADV 4CSW HIS B -13 UNP D0MK34 EXPRESSION TAG SEQADV 4CSW HIS B -12 UNP D0MK34 EXPRESSION TAG SEQADV 4CSW HIS B -11 UNP D0MK34 EXPRESSION TAG SEQADV 4CSW HIS B -10 UNP D0MK34 EXPRESSION TAG SEQADV 4CSW SER B -9 UNP D0MK34 EXPRESSION TAG SEQADV 4CSW SER B -8 UNP D0MK34 EXPRESSION TAG SEQADV 4CSW GLY B -7 UNP D0MK34 EXPRESSION TAG SEQADV 4CSW LEU B -6 UNP D0MK34 EXPRESSION TAG SEQADV 4CSW VAL B -5 UNP D0MK34 EXPRESSION TAG SEQADV 4CSW PRO B -4 UNP D0MK34 EXPRESSION TAG SEQADV 4CSW ARG B -3 UNP D0MK34 EXPRESSION TAG SEQADV 4CSW GLY B -2 UNP D0MK34 EXPRESSION TAG SEQADV 4CSW SER B -1 UNP D0MK34 EXPRESSION TAG SEQADV 4CSW HIS B 0 UNP D0MK34 EXPRESSION TAG SEQRES 1 A 406 HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG GLY SER SEQRES 2 A 406 HIS MET GLN LEU PRO GLU THR ILE LEU GLY GLY LEU ALA SEQRES 3 A 406 PRO GLU GLU PHE LEU ALA ASN TYR TRP GLN LYS ARG PRO SEQRES 4 A 406 LEU LEU ILE ARG GLN ALA LEU PRO GLY PHE ARG SER PRO SEQRES 5 A 406 ILE THR PRO GLU GLU LEU ALA GLY LEU ALA CYS GLU GLU SEQRES 6 A 406 GLY VAL THR ALA ARG LEU ILE LEU GLU LYS GLY GLY ALA SEQRES 7 A 406 TYR PRO TRP GLU VAL ARG TYR GLY PRO PHE GLU PRO GLU SEQRES 8 A 406 ASP PHE VAL ALA LEU PRO PRO THR HIS TRP THR LEU LEU SEQRES 9 A 406 VAL GLN GLU VAL ASP ARG LEU VAL PRO GLU VAL ALA ALA SEQRES 10 A 406 LEU LEU GLU THR VAL ARG PHE VAL PRO ASN TRP ARG LEU SEQRES 11 A 406 ASP ASP ILE MET VAL SER TYR ALA PRO GLU GLY GLY THR SEQRES 12 A 406 VAL GLY ALA HIS ILE ASP ASN TYR ASP VAL PHE LEU VAL SEQRES 13 A 406 GLN ALA TRP GLY ARG ARG ARG TRP GLN ILE ASN HIS ARG SEQRES 14 A 406 PRO VAL GLU ARG GLU GLU LEU VAL PRO GLY LEU GLU VAL SEQRES 15 A 406 ARG LEU LEU ALA HIS PHE GLU PRO ASP ALA GLU TRP ILE SEQRES 16 A 406 LEU GLU PRO GLY ASP VAL LEU TYR LEU PRO PRO ARG ILE SEQRES 17 A 406 PRO HIS TYR GLY VAL ALA LEU GLU ASP CYS MET THR PHE SEQRES 18 A 406 SER ILE GLY PHE ARG ALA PRO ASP GLN ALA GLU LEU ALA SEQRES 19 A 406 GLU ALA MET PRO ARG MET ALA ALA TRP LEU ASP GLY GLY SEQRES 20 A 406 ARG ARG TYR ALA ASP PRO ASP LEU THR PRO ALA ASP GLU SEQRES 21 A 406 PRO GLY GLU ILE THR PRO GLU ALA LEU ASP GLN ILE GLN SEQRES 22 A 406 ALA LEU LEU ARG ALA LEU ILE ASP ASP ARG GLU ARG LEU SEQRES 23 A 406 ALA ARG TRP PHE GLY CYS ILE ILE THR GLU PRO ARG ARG SEQRES 24 A 406 GLY LEU PRO PRO GLU PRO PRO GLY ARG PRO LEU SER ALA SEQRES 25 A 406 LYS GLN LEU HIS ARG ARG LEU GLN GLN GLY ALA THR LEU SEQRES 26 A 406 ARG ARG ASN ALA ILE PRO GLU LEU ALA TYR VAL ARG HIS SEQRES 27 A 406 ALA ASP GLY SER ALA THR LEU PHE ALA SER GLY GLU ALA SEQRES 28 A 406 TYR GLU LEU SER PRO GLU LEU ALA ASP VAL ALA PRO LEU SEQRES 29 A 406 LEU THR GLY ARG ARG PRO LEU THR ALA GLU THR LEU ARG SEQRES 30 A 406 PRO TRP LEU GLU ARG ASP ASP PHE LEU GLU LEU LEU GLN SEQRES 31 A 406 THR LEU ILE HIS SER GLY ILE LEU SER LEU ILE PRO ALA SEQRES 32 A 406 ARG LYS ARG SEQRES 1 B 406 HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG GLY SER SEQRES 2 B 406 HIS MET GLN LEU PRO GLU THR ILE LEU GLY GLY LEU ALA SEQRES 3 B 406 PRO GLU GLU PHE LEU ALA ASN TYR TRP GLN LYS ARG PRO SEQRES 4 B 406 LEU LEU ILE ARG GLN ALA LEU PRO GLY PHE ARG SER PRO SEQRES 5 B 406 ILE THR PRO GLU GLU LEU ALA GLY LEU ALA CYS GLU GLU SEQRES 6 B 406 GLY VAL THR ALA ARG LEU ILE LEU GLU LYS GLY GLY ALA SEQRES 7 B 406 TYR PRO TRP GLU VAL ARG TYR GLY PRO PHE GLU PRO GLU SEQRES 8 B 406 ASP PHE VAL ALA LEU PRO PRO THR HIS TRP THR LEU LEU SEQRES 9 B 406 VAL GLN GLU VAL ASP ARG LEU VAL PRO GLU VAL ALA ALA SEQRES 10 B 406 LEU LEU GLU THR VAL ARG PHE VAL PRO ASN TRP ARG LEU SEQRES 11 B 406 ASP ASP ILE MET VAL SER TYR ALA PRO GLU GLY GLY THR SEQRES 12 B 406 VAL GLY ALA HIS ILE ASP ASN TYR ASP VAL PHE LEU VAL SEQRES 13 B 406 GLN ALA TRP GLY ARG ARG ARG TRP GLN ILE ASN HIS ARG SEQRES 14 B 406 PRO VAL GLU ARG GLU GLU LEU VAL PRO GLY LEU GLU VAL SEQRES 15 B 406 ARG LEU LEU ALA HIS PHE GLU PRO ASP ALA GLU TRP ILE SEQRES 16 B 406 LEU GLU PRO GLY ASP VAL LEU TYR LEU PRO PRO ARG ILE SEQRES 17 B 406 PRO HIS TYR GLY VAL ALA LEU GLU ASP CYS MET THR PHE SEQRES 18 B 406 SER ILE GLY PHE ARG ALA PRO ASP GLN ALA GLU LEU ALA SEQRES 19 B 406 GLU ALA MET PRO ARG MET ALA ALA TRP LEU ASP GLY GLY SEQRES 20 B 406 ARG ARG TYR ALA ASP PRO ASP LEU THR PRO ALA ASP GLU SEQRES 21 B 406 PRO GLY GLU ILE THR PRO GLU ALA LEU ASP GLN ILE GLN SEQRES 22 B 406 ALA LEU LEU ARG ALA LEU ILE ASP ASP ARG GLU ARG LEU SEQRES 23 B 406 ALA ARG TRP PHE GLY CYS ILE ILE THR GLU PRO ARG ARG SEQRES 24 B 406 GLY LEU PRO PRO GLU PRO PRO GLY ARG PRO LEU SER ALA SEQRES 25 B 406 LYS GLN LEU HIS ARG ARG LEU GLN GLN GLY ALA THR LEU SEQRES 26 B 406 ARG ARG ASN ALA ILE PRO GLU LEU ALA TYR VAL ARG HIS SEQRES 27 B 406 ALA ASP GLY SER ALA THR LEU PHE ALA SER GLY GLU ALA SEQRES 28 B 406 TYR GLU LEU SER PRO GLU LEU ALA ASP VAL ALA PRO LEU SEQRES 29 B 406 LEU THR GLY ARG ARG PRO LEU THR ALA GLU THR LEU ARG SEQRES 30 B 406 PRO TRP LEU GLU ARG ASP ASP PHE LEU GLU LEU LEU GLN SEQRES 31 B 406 THR LEU ILE HIS SER GLY ILE LEU SER LEU ILE PRO ALA SEQRES 32 B 406 ARG LYS ARG HET CIT A1390 13 HET UN9 A1391 19 HET UN9 A1392 19 HET GOL A1393 6 HET MN B1390 1 HETNAM CIT CITRIC ACID HETNAM UN9 N-[(1-CHLORO-4-HYDROXYISOQUINOLIN-3-YL)CARBONYL]GLYCINE HETNAM GOL GLYCEROL HETNAM MN MANGANESE (II) ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CIT C6 H8 O7 FORMUL 4 UN9 2(C12 H9 CL N2 O4) FORMUL 6 GOL C3 H8 O3 FORMUL 7 MN MN 2+ FORMUL 8 HOH *141(H2 O) HELIX 1 1 ALA A 12 TYR A 20 1 9 HELIX 2 2 THR A 40 ALA A 48 1 9 HELIX 3 3 GLU A 75 VAL A 80 5 6 HELIX 4 4 GLU A 93 LEU A 97 5 5 HELIX 5 5 VAL A 98 ALA A 103 1 6 HELIX 6 6 LEU A 104 VAL A 108 5 5 HELIX 7 7 PRO A 112 TRP A 114 5 3 HELIX 8 8 ASP A 215 MET A 223 1 9 HELIX 9 9 PRO A 224 TRP A 229 5 6 HELIX 10 10 THR A 251 ASP A 268 1 18 HELIX 11 11 ASP A 268 THR A 281 1 14 HELIX 12 12 SER A 297 GLN A 307 1 11 HELIX 13 13 ALA A 315 PRO A 317 5 3 HELIX 14 14 ASP A 346 GLY A 353 1 8 HELIX 15 15 LEU A 362 GLU A 367 1 6 HELIX 16 16 ARG A 368 SER A 381 1 14 HELIX 17 17 ALA B 12 TYR B 20 1 9 HELIX 18 18 THR B 40 ALA B 48 1 9 HELIX 19 19 PRO B 76 ALA B 81 1 6 HELIX 20 20 GLU B 93 VAL B 98 1 6 HELIX 21 21 VAL B 98 ALA B 103 1 6 HELIX 22 22 LEU B 104 VAL B 108 5 5 HELIX 23 23 PRO B 112 TRP B 114 5 3 HELIX 24 24 ASP B 215 MET B 223 1 9 HELIX 25 25 PRO B 224 LEU B 230 5 7 HELIX 26 26 THR B 251 ASP B 267 1 17 HELIX 27 27 ASP B 268 GLU B 282 1 15 HELIX 28 28 SER B 297 GLN B 306 1 10 HELIX 29 29 ALA B 315 PRO B 317 5 3 HELIX 30 30 ASP B 346 GLY B 353 1 8 HELIX 31 31 THR B 358 ARG B 363 1 6 HELIX 32 32 ARG B 368 SER B 381 1 14 SHEET 1 AA 8 LEU A 26 ILE A 28 0 SHEET 2 AA 8 VAL A 187 LEU A 190 -1 O VAL A 187 N ILE A 28 SHEET 3 AA 8 VAL A 139 TRP A 145 -1 O VAL A 139 N LEU A 190 SHEET 4 AA 8 CYS A 204 PHE A 211 -1 O MET A 205 N ALA A 144 SHEET 5 AA 8 LEU A 116 ALA A 124 -1 N ASP A 117 O GLY A 210 SHEET 6 AA 8 TRP A 87 VAL A 91 -1 O LEU A 89 N TYR A 123 SHEET 7 AA 8 ALA A 55 LEU A 59 -1 O ARG A 56 N LEU A 90 SHEET 8 AA 8 GLU A 68 TYR A 71 -1 O GLU A 68 N LEU A 59 SHEET 1 AB 3 ALA A 178 LEU A 182 0 SHEET 2 AB 3 ARG A 148 ILE A 152 -1 O ARG A 148 N LEU A 182 SHEET 3 AB 3 HIS A 196 ALA A 200 -1 O TYR A 197 N GLN A 151 SHEET 1 AC 2 THR A 310 ARG A 313 0 SHEET 2 AC 2 LEU A 384 ILE A 387 -1 O SER A 385 N ARG A 312 SHEET 1 AD 3 LEU A 319 ARG A 323 0 SHEET 2 AD 3 ALA A 329 ALA A 333 -1 O THR A 330 N VAL A 322 SHEET 3 AD 3 GLU A 336 LEU A 340 -1 O GLU A 336 N ALA A 333 SHEET 1 BA 8 LEU B 26 ILE B 28 0 SHEET 2 BA 8 VAL B 187 LEU B 190 -1 O VAL B 187 N ILE B 28 SHEET 3 BA 8 VAL B 139 TRP B 145 -1 O VAL B 139 N LEU B 190 SHEET 4 BA 8 CYS B 204 PHE B 211 -1 O MET B 205 N ALA B 144 SHEET 5 BA 8 LEU B 116 ALA B 124 -1 N ASP B 117 O GLY B 210 SHEET 6 BA 8 TRP B 87 VAL B 91 -1 O LEU B 89 N TYR B 123 SHEET 7 BA 8 ALA B 55 LEU B 59 -1 O ARG B 56 N LEU B 90 SHEET 8 BA 8 GLU B 68 TYR B 71 -1 O GLU B 68 N LEU B 59 SHEET 1 BB 3 ALA B 178 LEU B 182 0 SHEET 2 BB 3 ARG B 148 ILE B 152 -1 O ARG B 148 N LEU B 182 SHEET 3 BB 3 HIS B 196 ALA B 200 -1 O TYR B 197 N GLN B 151 SHEET 1 BC 2 THR B 310 ARG B 313 0 SHEET 2 BC 2 LEU B 384 ILE B 387 -1 O SER B 385 N ARG B 312 SHEET 1 BD 3 LEU B 319 ARG B 323 0 SHEET 2 BD 3 ALA B 329 ALA B 333 -1 O THR B 330 N VAL B 322 SHEET 3 BD 3 GLU B 336 LEU B 340 -1 O GLU B 336 N ALA B 333 LINK NE2 HIS B 133 MN MN B1390 1555 1555 2.27 LINK OD2 ASP B 135 MN MN B1390 1555 1555 2.28 LINK NE2 HIS B 196 MN MN B1390 1555 1555 2.40 CISPEP 1 GLY A 72 PRO A 73 0 0.60 CISPEP 2 GLY B 72 PRO B 73 0 0.75 SITE 1 AC1 6 GLU A 42 GOL A1393 HOH A2082 HOH A2083 SITE 2 AC1 6 SER B 297 GLN B 300 SITE 1 AC2 5 PRO B 295 LEU B 296 SER B 297 ALA B 298 SITE 2 AC2 5 GLN B 376 SITE 1 AC3 8 ILE A 39 PRO A 41 TRP A 145 ASP A 203 SITE 2 AC3 8 MET A 205 GLN A 300 ARG A 304 GOL A1393 SITE 1 AC4 3 CIT A1390 UN9 A1392 HOH A2084 SITE 1 AC5 3 HIS B 133 ASP B 135 HIS B 196 CRYST1 158.300 87.690 90.610 90.00 113.10 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006317 0.000000 0.002694 0.00000 SCALE2 0.000000 0.011404 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011998 0.00000 MTRIX1 1 -0.926600 -0.085800 -0.366100 -12.61490 1 MTRIX2 1 -0.076800 -0.910000 0.407500 66.25350 1 MTRIX3 1 -0.368100 0.405700 0.836600 -17.34130 1