HEADER HYDROLASE 17-MAR-14 4CUB TITLE UNRAVELLING THE MULTIPLE FUNCTIONS OF THE ARCHITECTURALLY INTRICATE TITLE 2 STREPTOCOCCUS PNEUMONIAE BETA-GALACTOSIDASE, BGAA COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GALACTOSIDASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CARBOHYDRATE BINDING MODULE, RESIDUES 1463-1645; COMPND 5 EC: 3.2.1.23; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 1313; SOURCE 4 STRAIN: NCH18; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.K.SINGH,B.PLUVINAGE,M.A.HIGGINS,A.B.DALIA,M.FLYNN,A.R.LLOYD, AUTHOR 2 J.N.WEISER,K.A.STUBBS,A.B.BORASTON,S.J.KING REVDAT 4 29-JUL-20 4CUB 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 19-APR-17 4CUB 1 REMARK REVDAT 2 24-SEP-14 4CUB 1 JRNL REVDAT 1 20-AUG-14 4CUB 0 JRNL AUTH A.K.SINGH,B.PLUVINAGE,M.A.HIGGINS,A.B.DALIA,S.A.WOODIGA, JRNL AUTH 2 M.FLYNN,A.R.LLOYD,J.N.WEISER,K.A.STUBBS,A.B.BORASTON, JRNL AUTH 3 S.J.KING JRNL TITL UNRAVELLING THE MULTIPLE FUNCTIONS OF THE ARCHITECTURALLY JRNL TITL 2 INTRICATE STREPTOCOCCUS PNEUMONIAE BETA-GALACTOSIDASE, BGAA. JRNL REF PLOS PATHOG. V. 10 04364 2014 JRNL REFN ISSN 1553-7366 JRNL PMID 25210925 JRNL DOI 10.1371/JOURNAL.PPAT.1004364 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 23357 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1256 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1685 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.1910 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.2140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2767 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 94 REMARK 3 SOLVENT ATOMS : 307 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.59000 REMARK 3 B22 (A**2) : 0.59000 REMARK 3 B33 (A**2) : -1.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.226 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.197 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.131 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.809 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3006 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4100 ; 1.363 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 379 ; 7.047 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 143 ;36.834 ;25.315 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 437 ;12.034 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ; 8.572 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 447 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2356 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1489 ; 1.078 ; 2.072 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1877 ; 1.679 ; 3.095 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1515 ; 1.268 ; 2.175 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT U REMARK 3 VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 4CUB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1290060049. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08B1-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97874 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24686 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.30 REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.78000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 35.26500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.26500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 121.17000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.26500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 35.26500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.39000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.26500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.26500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 121.17000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 35.26500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.26500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 40.39000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 80.78000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1463 REMARK 465 THR A 1464 REMARK 465 GLU A 1465 REMARK 465 VAL A 1645 REMARK 465 GLN B 1463 REMARK 465 THR B 1464 REMARK 465 VAL B 1645 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A1601 CG CD OE1 NE2 REMARK 470 LYS A1643 CG CD CE NZ REMARK 470 GLN A1644 CG CD OE1 NE2 REMARK 470 LYS B1565 CG CD CE NZ REMARK 470 LYS B1643 CG CD CE NZ REMARK 470 GLN B1644 CG CD OE1 NE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 1565 CD CE NZ REMARK 480 GLN B 1506 CD OE1 NE2 REMARK 480 LYS B 1572 CD CE NZ REMARK 480 LYS B 1591 CE NZ REMARK 480 LYS B 1597 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS B1572 CG LYS B1572 CD -0.432 REMARK 500 LYS B1591 CD LYS B1591 CE -0.417 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B1481 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 LYS B1572 CB - CG - CD ANGL. DEV. = 27.9 DEGREES REMARK 500 LYS B1591 CG - CD - CE ANGL. DEV. = 28.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A1491 65.39 -116.28 REMARK 500 ASN A1504 -156.90 -140.14 REMARK 500 PHE A1576 56.01 -142.71 REMARK 500 LYS B1499 -0.06 74.70 REMARK 500 ASN B1504 -148.69 -143.24 REMARK 500 ASP B1548 -159.27 -148.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2645 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A1495 O REMARK 620 2 ASP A1498 OD1 76.4 REMARK 620 3 LEU A1500 O 168.8 92.4 REMARK 620 4 ASN A1509 OD1 98.0 95.1 83.0 REMARK 620 5 THR A1636 O 88.3 164.0 102.8 91.5 REMARK 620 6 GLU A1637 OE1 90.8 87.8 88.4 171.1 87.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B2645 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B1495 O REMARK 620 2 ASP B1498 OD1 79.7 REMARK 620 3 LEU B1500 O 170.3 91.0 REMARK 620 4 LEU B1500 O 169.5 90.8 1.9 REMARK 620 5 ASN B1509 OD1 96.4 94.9 81.7 79.9 REMARK 620 6 THR B1636 O 83.8 162.3 105.8 106.2 93.2 REMARK 620 7 GLU B1637 OE1 91.0 83.6 90.5 92.3 172.1 90.4 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CU6 RELATED DB: PDB REMARK 900 UNRAVELLING THE MULTIPLE FUNCTIONS OF THE ARCHITECTURALLY INTRICATE REMARK 900 STREPTOCOCCUS PNEUMONIAE BETA-GALACTOSIDASE, BGAA REMARK 900 RELATED ID: 4CU7 RELATED DB: PDB REMARK 900 UNRAVELLING THE MULTIPLE FUNCTIONS OF THE ARCHITECTURALLY INTRICATE REMARK 900 STREPTOCOCCUS PNEUMONIAE BETA-GALACTOSIDASE, BGAA REMARK 900 RELATED ID: 4CU8 RELATED DB: PDB REMARK 900 UNRAVELLING THE MULTIPLE FUNCTIONS OF THE ARCHITECTURALLY INTRICATE REMARK 900 STREPTOCOCCUS PNEUMONIAE BETA-GALACTOSIDASE, BGAA REMARK 900 RELATED ID: 4CU9 RELATED DB: PDB REMARK 900 UNRAVELLING THE MULTIPLE FUNCTIONS OF THE ARCHITECTURALLY INTRICATE REMARK 900 STREPTOCOCCUS PNEUMONIAE BETA-GALACTOSIDASE, BGAA REMARK 900 RELATED ID: 4CUA RELATED DB: PDB REMARK 900 UNRAVELLING THE MULTIPLE FUNCTIONS OF THE ARCHITECTURALLY INTRICATE REMARK 900 STREPTOCOCCUS PNEUMONIAE BETA-GALACTOSIDASE, BGAA REMARK 900 RELATED ID: 4CUC RELATED DB: PDB REMARK 900 UNRAVELLING THE MULTIPLE FUNCTIONS OF THE ARCHITECTURALLY INTRICATE REMARK 900 STREPTOCOCCUS PNEUMONIAE BETA-GALACTOSIDASE, BGAA. DBREF 4CUB A 1463 1645 UNP Q8DQP4 Q8DQP4_STRR6 1463 1645 DBREF 4CUB B 1463 1645 UNP Q8DQP4 Q8DQP4_STRR6 1463 1645 SEQRES 1 A 183 GLN THR GLU GLN GLY ALA ASN ILE SER ASP GLN TRP THR SEQRES 2 A 183 GLY SER GLU LEU PRO LEU ALA PHE ALA SER ASP SER ASN SEQRES 3 A 183 PRO SER ASP PRO VAL SER ASN VAL ASN ASP LYS LEU ILE SEQRES 4 A 183 SER TYR ASN ASN GLN PRO ALA ASN ARG TRP THR ASN TRP SEQRES 5 A 183 ASN ARG SER ASN PRO GLU ALA SER VAL GLY VAL LEU PHE SEQRES 6 A 183 GLY ASP SER GLY ILE LEU SER LYS ARG SER VAL ASP ASN SEQRES 7 A 183 LEU SER VAL GLY PHE HIS GLU ASP HIS GLY VAL GLY ALA SEQRES 8 A 183 PRO LYS SER TYR VAL ILE GLU TYR TYR VAL GLY LYS THR SEQRES 9 A 183 VAL PRO THR ALA PRO LYS ASN PRO SER PHE VAL GLY ASN SEQRES 10 A 183 GLU ASP HIS VAL PHE ASN ASP SER ALA ASN TRP LYS PRO SEQRES 11 A 183 VAL THR ASN LEU LYS ALA PRO ALA GLN LEU LYS ALA GLY SEQRES 12 A 183 GLU MET ASN HIS PHE SER PHE ASP LYS VAL GLU THR TYR SEQRES 13 A 183 ALA ILE ARG ILE ARG MET VAL LYS ALA ASP ASN LYS ARG SEQRES 14 A 183 GLY THR SER ILE THR GLU VAL GLN ILE PHE ALA LYS GLN SEQRES 15 A 183 VAL SEQRES 1 B 183 GLN THR GLU GLN GLY ALA ASN ILE SER ASP GLN TRP THR SEQRES 2 B 183 GLY SER GLU LEU PRO LEU ALA PHE ALA SER ASP SER ASN SEQRES 3 B 183 PRO SER ASP PRO VAL SER ASN VAL ASN ASP LYS LEU ILE SEQRES 4 B 183 SER TYR ASN ASN GLN PRO ALA ASN ARG TRP THR ASN TRP SEQRES 5 B 183 ASN ARG SER ASN PRO GLU ALA SER VAL GLY VAL LEU PHE SEQRES 6 B 183 GLY ASP SER GLY ILE LEU SER LYS ARG SER VAL ASP ASN SEQRES 7 B 183 LEU SER VAL GLY PHE HIS GLU ASP HIS GLY VAL GLY ALA SEQRES 8 B 183 PRO LYS SER TYR VAL ILE GLU TYR TYR VAL GLY LYS THR SEQRES 9 B 183 VAL PRO THR ALA PRO LYS ASN PRO SER PHE VAL GLY ASN SEQRES 10 B 183 GLU ASP HIS VAL PHE ASN ASP SER ALA ASN TRP LYS PRO SEQRES 11 B 183 VAL THR ASN LEU LYS ALA PRO ALA GLN LEU LYS ALA GLY SEQRES 12 B 183 GLU MET ASN HIS PHE SER PHE ASP LYS VAL GLU THR TYR SEQRES 13 B 183 ALA ILE ARG ILE ARG MET VAL LYS ALA ASP ASN LYS ARG SEQRES 14 B 183 GLY THR SER ILE THR GLU VAL GLN ILE PHE ALA LYS GLN SEQRES 15 B 183 VAL HET NAG C 1 15 HET GAL C 2 11 HET NAG D 1 15 HET GAL D 2 11 HET CA A2645 1 HET EDO A2646 4 HET EDO A2647 4 HET EDO A2648 4 HET EDO A2649 4 HET EDO A2650 4 HET CA B2645 1 HET EDO B2646 4 HET EDO B2647 4 HET EDO B2648 4 HET EDO B2649 4 HET EDO B2650 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 3 GAL 2(C6 H12 O6) FORMUL 5 CA 2(CA 2+) FORMUL 6 EDO 10(C2 H6 O2) FORMUL 17 HOH *307(H2 O) HELIX 1 1 PRO A 1492 ASP A 1498 5 7 HELIX 2 2 ASN A 1573 GLU A 1580 5 8 HELIX 3 3 HIS A 1582 ASP A 1586 5 5 HELIX 4 4 ASP A 1586 ALA A 1588 5 3 HELIX 5 5 PRO B 1492 ASP B 1498 5 7 HELIX 6 6 ASN B 1573 GLU B 1580 5 8 HELIX 7 7 HIS B 1582 ASP B 1586 5 5 HELIX 8 8 ASP B 1586 ALA B 1588 5 3 SHEET 1 AA 5 LEU A1481 ALA A1484 0 SHEET 2 AA 5 GLU A1520 LEU A1526 -1 O GLY A1524 N PHE A1483 SHEET 3 AA 5 ALA A1619 LYS A1626 -1 O ILE A1620 N VAL A1525 SHEET 4 AA 5 PRO A1554 TYR A1562 -1 N LYS A1555 O VAL A1625 SHEET 5 AA 5 TRP A1590 PRO A1592 -1 O LYS A1591 N TYR A1561 SHEET 1 AB 2 TRP A1511 THR A1512 0 SHEET 2 AB 2 GLY A1632 GLN A1639 -1 O ILE A1635 N TRP A1511 SHEET 1 AC 2 VAL A1551 GLY A1552 0 SHEET 2 AC 2 GLY A1632 GLN A1639 -1 O GLY A1632 N GLY A1552 SHEET 1 AD 4 MET A1607 THR A1617 0 SHEET 2 AD 4 ARG A1536 PHE A1545 -1 O ARG A1536 N THR A1617 SHEET 3 AD 4 GLY A1632 GLN A1639 -1 N THR A1636 O GLY A1544 SHEET 4 AD 4 VAL A1551 GLY A1552 -1 O GLY A1552 N SER A1634 SHEET 1 AE 4 MET A1607 THR A1617 0 SHEET 2 AE 4 ARG A1536 PHE A1545 -1 O ARG A1536 N THR A1617 SHEET 3 AE 4 GLY A1632 GLN A1639 -1 N THR A1636 O GLY A1544 SHEET 4 AE 4 TRP A1511 THR A1512 -1 O TRP A1511 N ILE A1635 SHEET 1 AF 2 GLY A1528 ASP A1529 0 SHEET 2 AF 2 ILE A1532 LEU A1533 -1 O ILE A1532 N ASP A1529 SHEET 1 BA 2 ALA B1468 ASN B1469 0 SHEET 2 BA 2 PHE B1641 ALA B1642 -1 O ALA B1642 N ALA B1468 SHEET 1 BB 5 LEU B1481 ALA B1484 0 SHEET 2 BB 5 GLU B1520 LEU B1526 -1 O GLY B1524 N PHE B1483 SHEET 3 BB 5 ALA B1619 LYS B1626 -1 O ILE B1620 N VAL B1525 SHEET 4 BB 5 PRO B1554 TYR B1562 -1 N LYS B1555 O VAL B1625 SHEET 5 BB 5 TRP B1590 PRO B1592 -1 O LYS B1591 N TYR B1561 SHEET 1 BC 4 TRP B1511 THR B1512 0 SHEET 2 BC 4 SER B1634 GLN B1639 -1 O ILE B1635 N TRP B1511 SHEET 3 BC 4 ARG B1536 PHE B1545 -1 O SER B1542 N GLN B1639 SHEET 4 BC 4 MET B1607 THR B1617 -1 O ASN B1608 N VAL B1543 SHEET 1 BD 2 GLY B1528 ASP B1529 0 SHEET 2 BD 2 ILE B1532 LEU B1533 -1 O ILE B1532 N ASP B1529 LINK O4 NAG C 1 C1 GAL C 2 1555 1555 1.45 LINK O4 NAG D 1 C1 GAL D 2 1555 1555 1.43 LINK O ASN A1495 CA CA A2645 1555 1555 2.25 LINK OD1 ASP A1498 CA CA A2645 1555 1555 2.48 LINK O LEU A1500 CA CA A2645 1555 1555 2.19 LINK OD1 ASN A1509 CA CA A2645 1555 1555 2.38 LINK O THR A1636 CA CA A2645 1555 1555 2.30 LINK OE1 GLU A1637 CA CA A2645 1555 1555 2.36 LINK O ASN B1495 CA CA B2645 1555 1555 2.26 LINK OD1 ASP B1498 CA CA B2645 1555 1555 2.51 LINK O ALEU B1500 CA CA B2645 1555 1555 2.25 LINK O BLEU B1500 CA CA B2645 1555 1555 2.25 LINK OD1 ASN B1509 CA CA B2645 1555 1555 2.39 LINK O THR B1636 CA CA B2645 1555 1555 2.23 LINK OE1 GLU B1637 CA CA B2645 1555 1555 2.20 CISPEP 1 LEU A 1479 PRO A 1480 0 3.00 CISPEP 2 GLN A 1506 PRO A 1507 0 1.45 CISPEP 3 LEU B 1479 PRO B 1480 0 4.96 CISPEP 4 GLN B 1506 PRO B 1507 0 -3.20 CRYST1 70.530 70.530 161.560 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014178 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014178 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006190 0.00000