HEADER LIGASE 28-MAR-14 4CVL TITLE PAMURF IN COMPLEX WITH AMP-PNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D-ALANINE LIGASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D- ALANINE LIGASE; COMPND 5 EC: 6.3.2.10; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA PAO1; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 ATCC: 15692; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET KEYWDS LIGASE, MURF EXPDTA X-RAY DIFFRACTION AUTHOR K.M.RUANE,V.MAJCE REVDAT 2 08-MAY-24 4CVL 1 REMARK LINK REVDAT 1 22-APR-15 4CVL 0 JRNL AUTH V.MAJCE,K.RUANE JRNL TITL PAMURF IN COMPLEX WITH AMP-PNP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 9565 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 485 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 677 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 45 REMARK 3 BIN FREE R VALUE : 0.4130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3035 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.75000 REMARK 3 B22 (A**2) : -1.85000 REMARK 3 B33 (A**2) : 6.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.506 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.365 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.458 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.924 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.866 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3102 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3058 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4219 ; 1.525 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6979 ; 0.835 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 420 ; 7.091 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 109 ;34.203 ;23.853 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 477 ;16.327 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;12.108 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 518 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3542 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 651 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1698 ; 2.792 ; 5.110 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1697 ; 2.791 ; 5.108 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2112 ; 4.481 ; 7.652 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1404 ; 2.920 ; 5.319 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 4CVL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1290060140. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10089 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.980 REMARK 200 RESOLUTION RANGE LOW (A) : 63.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.900 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : 0.19000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 13.20 REMARK 200 R MERGE FOR SHELL (I) : 1.02000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CACL2, 0.1M TRIS (PH 8.5), 20 % REMARK 280 PEG 6K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.29000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.76000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.69000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.76000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.29000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.69000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 46 REMARK 465 PRO A 47 REMARK 465 ARG A 48 REMARK 465 PHE A 49 REMARK 465 VAL A 72 REMARK 465 ALA A 73 REMARK 465 ASP A 74 REMARK 465 GLY A 191 REMARK 465 THR A 192 REMARK 465 ALA A 193 REMARK 465 HIS A 194 REMARK 465 VAL A 195 REMARK 465 GLY A 196 REMARK 465 GLU A 197 REMARK 465 PHE A 198 REMARK 465 GLY A 199 REMARK 465 TYR A 340 REMARK 465 ASN A 341 REMARK 465 ALA A 342 REMARK 465 ASN A 343 REMARK 465 GLU A 370 REMARK 465 LEU A 371 REMARK 465 GLY A 372 REMARK 465 SER A 373 REMARK 465 TRP A 374 REMARK 465 GLY A 452 REMARK 465 SER A 453 REMARK 465 SER A 454 REMARK 465 GLU A 455 REMARK 465 GLU A 456 REMARK 465 SER A 457 REMARK 465 HIS A 458 REMARK 465 SER A 459 REMARK 465 SER A 460 REMARK 465 VAL A 461 REMARK 465 ASP A 462 REMARK 465 LYS A 463 REMARK 465 LEU A 464 REMARK 465 ALA A 465 REMARK 465 ALA A 466 REMARK 465 ALA A 467 REMARK 465 LEU A 468 REMARK 465 GLU A 469 REMARK 465 HIS A 470 REMARK 465 HIS A 471 REMARK 465 HIS A 472 REMARK 465 HIS A 473 REMARK 465 HIS A 474 REMARK 465 HIS A 475 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 33 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 83 CD NE CZ NH1 NH2 REMARK 470 ARG A 138 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 203 CG CD CE NZ REMARK 470 GLU A 206 CG CD OE1 OE2 REMARK 470 GLN A 260 CG CD OE1 NE2 REMARK 470 ARG A 270 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 321 CD CE NZ REMARK 470 GLU A 376 CG CD OE1 OE2 REMARK 470 ARG A 412 CD NE CZ NH1 NH2 REMARK 470 ASP A 428 CG OD1 OD2 REMARK 470 ARG A 439 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 445 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 12 -77.32 -51.01 REMARK 500 ARG A 33 49.88 -90.60 REMARK 500 ALA A 34 50.13 169.54 REMARK 500 ASP A 130 105.05 -178.12 REMARK 500 THR A 137 117.76 -31.85 REMARK 500 ASN A 140 57.26 -117.51 REMARK 500 ASN A 143 -162.25 -103.02 REMARK 500 ARG A 181 73.75 40.51 REMARK 500 ASP A 248 -40.11 -138.31 REMARK 500 LEU A 307 -39.04 -39.93 REMARK 500 GLU A 376 -23.93 -35.47 REMARK 500 THR A 430 -21.39 84.01 REMARK 500 ALA A 449 -18.35 -48.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 128 GLY A 129 -36.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1453 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 114 OG1 REMARK 620 2 ASN A 140 OD1 106.2 REMARK 620 3 GLU A 164 OE2 84.4 77.5 REMARK 620 4 ACP A1452 O3G 150.8 102.9 99.6 REMARK 620 5 ACP A1452 O2B 77.3 170.2 94.0 73.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1454 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ACP A1452 O3G REMARK 620 2 ACP A1452 O2B 64.8 REMARK 620 3 ACP A1452 O1A 138.5 76.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACP A 1452 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1453 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1454 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CVK RELATED DB: PDB REMARK 900 PAMURF IN COMPLEX WITH UDP-MURNAC-TRIPEPTIDE (MDAP) REMARK 900 RELATED ID: 4CVM RELATED DB: PDB REMARK 900 PAMURF IN COMPLEX WITH AMP-PNP AND UDP-MURNAC- TRIPEPTIDE (MDAP) REMARK 999 REMARK 999 SEQUENCE REMARK 999 CONTAINS A C-TERM HIS TAG DBREF 4CVL A 1 458 UNP Q9HVZ7 Q9HVZ7_PSEAE 1 458 SEQADV 4CVL GLU A 39 UNP Q9HVZ7 GLN 39 CONFLICT SEQADV 4CVL ASP A 428 UNP Q9HVZ7 GLN 428 CONFLICT SEQADV 4CVL SER A 459 UNP Q9HVZ7 EXPRESSION TAG SEQADV 4CVL SER A 460 UNP Q9HVZ7 EXPRESSION TAG SEQADV 4CVL VAL A 461 UNP Q9HVZ7 EXPRESSION TAG SEQADV 4CVL ASP A 462 UNP Q9HVZ7 EXPRESSION TAG SEQADV 4CVL LYS A 463 UNP Q9HVZ7 EXPRESSION TAG SEQADV 4CVL LEU A 464 UNP Q9HVZ7 EXPRESSION TAG SEQADV 4CVL ALA A 465 UNP Q9HVZ7 EXPRESSION TAG SEQADV 4CVL ALA A 466 UNP Q9HVZ7 EXPRESSION TAG SEQADV 4CVL ALA A 467 UNP Q9HVZ7 EXPRESSION TAG SEQADV 4CVL LEU A 468 UNP Q9HVZ7 EXPRESSION TAG SEQADV 4CVL GLU A 469 UNP Q9HVZ7 EXPRESSION TAG SEQADV 4CVL HIS A 470 UNP Q9HVZ7 EXPRESSION TAG SEQADV 4CVL HIS A 471 UNP Q9HVZ7 EXPRESSION TAG SEQADV 4CVL HIS A 472 UNP Q9HVZ7 EXPRESSION TAG SEQADV 4CVL HIS A 473 UNP Q9HVZ7 EXPRESSION TAG SEQADV 4CVL HIS A 474 UNP Q9HVZ7 EXPRESSION TAG SEQADV 4CVL HIS A 475 UNP Q9HVZ7 EXPRESSION TAG SEQRES 1 A 475 MET LEU GLU PRO LEU ARG LEU SER GLN LEU THR VAL ALA SEQRES 2 A 475 LEU ASP ALA ARG LEU ILE GLY GLU ASP ALA VAL PHE SER SEQRES 3 A 475 ALA VAL SER THR ASP SER ARG ALA ILE GLY PRO GLY GLU SEQRES 4 A 475 LEU PHE ILE ALA LEU SER GLY PRO ARG PHE ASP GLY HIS SEQRES 5 A 475 ASP TYR LEU ALA GLU VAL ALA ALA LYS GLY ALA VAL ALA SEQRES 6 A 475 ALA LEU VAL GLU ARG GLU VAL ALA ASP ALA PRO LEU PRO SEQRES 7 A 475 GLN LEU LEU VAL ARG ASP THR ARG ALA ALA LEU GLY ARG SEQRES 8 A 475 LEU GLY ALA LEU ASN ARG ARG LYS PHE THR GLY PRO LEU SEQRES 9 A 475 ALA ALA MET THR GLY SER SER GLY LYS THR THR VAL LYS SEQRES 10 A 475 GLU MET LEU ALA SER ILE LEU ARG THR GLN ALA GLY ASP SEQRES 11 A 475 ALA GLU SER VAL LEU ALA THR ARG GLY ASN LEU ASN ASN SEQRES 12 A 475 ASP LEU GLY VAL PRO LEU THR LEU LEU GLN LEU ALA PRO SEQRES 13 A 475 GLN HIS ARG SER ALA VAL ILE GLU LEU GLY ALA SER ARG SEQRES 14 A 475 ILE GLY GLU ILE ALA TYR THR VAL GLU LEU THR ARG PRO SEQRES 15 A 475 HIS VAL ALA ILE ILE THR ASN ALA GLY THR ALA HIS VAL SEQRES 16 A 475 GLY GLU PHE GLY GLY PRO GLU LYS ILE VAL GLU ALA LYS SEQRES 17 A 475 GLY GLU ILE LEU GLU GLY LEU ALA ALA ASP GLY THR ALA SEQRES 18 A 475 VAL LEU ASN LEU ASP ASP LYS ALA PHE ASP THR TRP LYS SEQRES 19 A 475 ALA ARG ALA SER GLY ARG PRO LEU LEU THR PHE SER LEU SEQRES 20 A 475 ASP ARG PRO GLN ALA ASP PHE ARG ALA ALA ASP LEU GLN SEQRES 21 A 475 ARG ASP ALA ARG GLY CYS MET GLY PHE ARG LEU GLN GLY SEQRES 22 A 475 VAL ALA GLY GLU ALA GLN VAL GLN LEU ASN LEU LEU GLY SEQRES 23 A 475 ARG HIS ASN VAL ALA ASN ALA LEU ALA ALA ALA ALA ALA SEQRES 24 A 475 ALA HIS ALA LEU GLY VAL PRO LEU ASP GLY ILE VAL ALA SEQRES 25 A 475 GLY LEU GLN ALA LEU GLN PRO VAL LYS GLY ARG ALA VAL SEQRES 26 A 475 ALA GLN LEU THR ALA SER GLY LEU ARG VAL ILE ASP ASP SEQRES 27 A 475 SER TYR ASN ALA ASN PRO ALA SER MET LEU ALA ALA ILE SEQRES 28 A 475 ASP ILE LEU SER GLY PHE SER GLY ARG THR VAL LEU VAL SEQRES 29 A 475 LEU GLY ASP MET GLY GLU LEU GLY SER TRP ALA GLU GLN SEQRES 30 A 475 ALA HIS ARG GLU VAL GLY ALA TYR ALA ALA GLY LYS VAL SEQRES 31 A 475 SER ALA LEU TYR ALA VAL GLY PRO LEU MET ALA HIS ALA SEQRES 32 A 475 VAL GLN ALA PHE GLY ALA THR GLY ARG HIS PHE ALA ASP SEQRES 33 A 475 GLN ALA SER LEU ILE GLY ALA LEU ALA THR GLU ASP PRO SEQRES 34 A 475 THR THR THR ILE LEU ILE LYS GLY SER ARG SER ALA ALA SEQRES 35 A 475 MET ASP LYS VAL VAL ALA ALA LEU CYS GLY SER SER GLU SEQRES 36 A 475 GLU SER HIS SER SER VAL ASP LYS LEU ALA ALA ALA LEU SEQRES 37 A 475 GLU HIS HIS HIS HIS HIS HIS HET ACP A1452 31 HET MG A1453 1 HET MG A1454 1 HETNAM ACP PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER HETNAM MG MAGNESIUM ION HETSYN ACP ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE FORMUL 2 ACP C11 H18 N5 O12 P3 FORMUL 3 MG 2(MG 2+) HELIX 1 1 LEU A 7 ASP A 15 1 9 HELIX 2 2 ASP A 50 ASP A 53 5 4 HELIX 3 3 TYR A 54 LYS A 61 1 8 HELIX 4 4 ASP A 84 ARG A 98 1 15 HELIX 5 5 GLY A 112 GLY A 129 1 18 HELIX 6 6 ASP A 130 GLU A 132 5 3 HELIX 7 7 LEU A 145 GLN A 153 1 9 HELIX 8 8 GLY A 171 ARG A 181 1 11 HELIX 9 9 GLY A 200 GLY A 209 1 10 HELIX 10 10 GLU A 210 LEU A 215 5 6 HELIX 11 11 ALA A 229 ALA A 237 1 9 HELIX 12 12 ARG A 287 LEU A 303 1 17 HELIX 13 13 PRO A 306 ALA A 316 1 11 HELIX 14 14 PRO A 344 GLY A 356 1 13 HELIX 15 15 ALA A 375 ALA A 387 1 13 HELIX 16 16 LEU A 399 GLY A 408 1 10 HELIX 17 17 ASP A 416 ALA A 425 1 10 HELIX 18 18 SER A 438 ALA A 442 5 5 HELIX 19 19 MET A 443 ALA A 449 1 7 SHEET 1 AA 2 LEU A 5 ARG A 6 0 SHEET 2 AA 2 VAL A 24 PHE A 25 -1 O PHE A 25 N LEU A 5 SHEET 1 AB 5 ARG A 17 ILE A 19 0 SHEET 2 AB 5 GLN A 79 LEU A 81 -1 O GLN A 79 N ILE A 19 SHEET 3 AB 5 ALA A 63 VAL A 68 1 O ALA A 66 N LEU A 80 SHEET 4 AB 5 GLU A 39 ILE A 42 1 O GLU A 39 N VAL A 64 SHEET 5 AB 5 ALA A 27 SER A 29 1 O ALA A 27 N LEU A 40 SHEET 1 AC 9 VAL A 134 ALA A 136 0 SHEET 2 AC 9 SER A 160 GLU A 164 1 O SER A 160 N LEU A 135 SHEET 3 AC 9 LEU A 104 THR A 108 1 O ALA A 105 N ILE A 163 SHEET 4 AC 9 VAL A 184 ILE A 187 1 O VAL A 184 N ALA A 106 SHEET 5 AC 9 THR A 220 ASN A 224 1 O THR A 220 N ALA A 185 SHEET 6 AC 9 LEU A 242 SER A 246 1 O LEU A 243 N LEU A 223 SHEET 7 AC 9 PHE A 254 ARG A 261 1 O PHE A 254 N SER A 246 SHEET 8 AC 9 MET A 267 GLY A 273 -1 O GLY A 268 N GLN A 260 SHEET 9 AC 9 ALA A 278 GLN A 281 -1 O ALA A 278 N LEU A 271 SHEET 1 AD 6 VAL A 325 LEU A 328 0 SHEET 2 AD 6 ARG A 334 ASP A 337 -1 O VAL A 335 N GLN A 327 SHEET 3 AD 6 THR A 432 LYS A 436 1 O ILE A 433 N ILE A 336 SHEET 4 AD 6 THR A 361 LEU A 365 1 O VAL A 362 N LEU A 434 SHEET 5 AD 6 ALA A 392 VAL A 396 1 O ALA A 392 N LEU A 363 SHEET 6 AD 6 ARG A 412 PHE A 414 1 O ARG A 412 N ALA A 395 LINK OG1 THR A 114 MG MG A1453 1555 1555 2.12 LINK OD1 ASN A 140 MG MG A1453 1555 1555 2.02 LINK OE2 GLU A 164 MG MG A1453 1555 1555 2.51 LINK O3G ACP A1452 MG MG A1453 1555 1555 1.90 LINK O2B ACP A1452 MG MG A1453 1555 1555 2.35 LINK O3G ACP A1452 MG MG A1454 1555 1555 2.41 LINK O2B ACP A1452 MG MG A1454 1555 1555 2.38 LINK O1A ACP A1452 MG MG A1454 1555 1555 2.19 SITE 1 AC1 12 SER A 110 SER A 111 GLY A 112 LYS A 113 SITE 2 AC1 12 THR A 114 THR A 115 ASN A 140 GLU A 164 SITE 3 AC1 12 ASN A 189 ASN A 292 MG A1453 MG A1454 SITE 1 AC2 5 THR A 114 ASN A 140 GLU A 164 ACP A1452 SITE 2 AC2 5 MG A1454 SITE 1 AC3 4 THR A 114 ASN A 140 ACP A1452 MG A1453 CRYST1 58.580 87.380 91.520 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017071 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011444 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010927 0.00000