HEADER OXIDOREDUCTASE 31-MAR-14 4CW0 TITLE CRYSTAL STRUCTURE OF COFACTOR-FREE URATE OXIDASE ANAEROBICALLY TITLE 2 COMPLEXED WITH 9-METHYL URIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: URICASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: URATE OXIDASE; COMPND 5 EC: 1.7.3.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS FLAVUS; SOURCE 3 ORGANISM_TAXID: 5059; SOURCE 4 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 5 EXPRESSION_SYSTEM_COMMON: BAKER'S YEAST; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4932 KEYWDS OXIDOREDUCTASE, COFACTOR-FREE OXIDASE EXPDTA X-RAY DIFFRACTION AUTHOR S.BUI,R.A.STEINER REVDAT 4 21-FEB-18 4CW0 1 JRNL REVDAT 3 20-DEC-17 4CW0 1 JRNL REVDAT 2 17-DEC-14 4CW0 1 JRNL REVDAT 1 29-OCT-14 4CW0 0 JRNL AUTH S.BUI,D.VON STETTEN,P.G.JAMBRINA,T.PRANGE,N.COLLOC'H, JRNL AUTH 2 D.DE SANCTIS,A.ROYANT,E.ROSTA,R.A.STEINER JRNL TITL DIRECT EVIDENCE FOR A PEROXIDE INTERMEDIATE AND A REACTIVE JRNL TITL 2 ENZYME-SUBSTRATE-DIOXYGEN CONFIGURATION IN A COFACTOR-FREE JRNL TITL 3 OXIDASE. JRNL REF ANGEW. CHEM. INT. ED. ENGL. V. 53 13710 2014 JRNL REFN ESSN 1521-3773 JRNL PMID 25314114 JRNL DOI 10.1002/ANIE.201405485 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 59235 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.118 REMARK 3 R VALUE (WORKING SET) : 0.116 REMARK 3 FREE R VALUE : 0.157 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3177 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4354 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 251 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2409 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 582 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.61000 REMARK 3 B22 (A**2) : -0.57000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.059 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.057 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.040 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.486 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2734 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2615 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3758 ; 1.464 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6073 ; 0.863 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 421 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3195 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 629 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1292 ; 2.028 ; 1.218 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1290 ; 1.974 ; 1.213 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1631 ; 2.328 ; 1.832 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1631 ; 2.355 ; 1.836 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1442 ; 2.369 ; 1.451 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1443 ; 2.368 ; 1.452 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2097 ; 2.872 ; 2.084 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2750 ; 5.811 ;16.315 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2304 ; 4.210 ;13.890 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5349 ; 4.100 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 150 ;38.875 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5738 ;10.878 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 4CW0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1290060166. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.182 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62422 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.56000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MG/ML UOX IN 50 MM TRIS-HCL PH 8.0 REMARK 280 SATURATED WITH 9-METHYL URIC ACID 8% PEG 8000, 50 MM TRIS-HCL PH REMARK 280 8.0 CRYSTALS GROWN ANAEROBICALLY REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.88500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.49500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 52.18000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.88500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.49500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.18000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.88500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.49500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 52.18000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.88500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.49500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 52.18000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 23900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -134.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 79.77000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 104.36000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 79.77000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 94.99000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 94.99000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 104.36000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2292 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2023 O HOH A 2074 2.08 REMARK 500 O HOH A 2007 O HOH A 2143 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2331 O HOH A 2368 4566 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 118 28.04 -152.09 REMARK 500 SER A 124 169.84 93.11 REMARK 500 ASP A 175 105.07 -163.31 REMARK 500 SER A 226 162.47 179.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2120 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A2121 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH A2129 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH A2226 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A2227 DISTANCE = 5.85 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 ACETYL GROUP (ACE): LINKED TO A1 TO GENERATE SAC REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MUA A 1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CW2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF COFACTOR-FREE URATE OXIDASE IN COMPLEX WITH REMARK 900 THE 5-PEROXO DERIVATIVE OF 9-METYL URIC ACID (X-RAY DOSE, 2.5 KGY) REMARK 900 RELATED ID: 4CW3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF COFACTOR-FREE URATE OXIDASE IN COMPLEX WITH REMARK 900 THE 5-PEROXO DERIVATIVE OF 9-METYL URIC ACID (X-RAY DOSE, 665 KGY) REMARK 900 RELATED ID: 4CW6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF COFACTOR-FREE URATE OXIDASE IN COMPLEX WITH REMARK 900 THE 5-PEROXO DERIVATIVE OF 9-METYL URIC ACID (X-RAY DOSE, 92 KGY) REMARK 999 REMARK 999 SEQUENCE REMARK 999 INITIAL MET REMOVED DBREF 4CW0 A 1 301 UNP Q00511 URIC_ASPFL 2 302 SEQRES 1 A 301 SAC ALA VAL LYS ALA ALA ARG TYR GLY LYS ASP ASN VAL SEQRES 2 A 301 ARG VAL TYR LYS VAL HIS LYS ASP GLU LYS THR GLY VAL SEQRES 3 A 301 GLN THR VAL TYR GLU MET THR VAL CYS VAL LEU LEU GLU SEQRES 4 A 301 GLY GLU ILE GLU THR SER TYR THR LYS ALA ASP ASN SER SEQRES 5 A 301 VAL ILE VAL ALA THR ASP SER ILE LYS ASN THR ILE TYR SEQRES 6 A 301 ILE THR ALA LYS GLN ASN PRO VAL THR PRO PRO GLU LEU SEQRES 7 A 301 PHE GLY SER ILE LEU GLY THR HIS PHE ILE GLU LYS TYR SEQRES 8 A 301 ASN HIS ILE HIS ALA ALA HIS VAL ASN ILE VAL CYS HIS SEQRES 9 A 301 ARG TRP THR ARG MET ASP ILE ASP GLY LYS PRO HIS PRO SEQRES 10 A 301 HIS SER PHE ILE ARG ASP SER GLU GLU LYS ARG ASN VAL SEQRES 11 A 301 GLN VAL ASP VAL VAL GLU GLY LYS GLY ILE ASP ILE LYS SEQRES 12 A 301 SER SER LEU SER GLY LEU THR VAL LEU LYS SER THR ASN SEQRES 13 A 301 SER GLN PHE TRP GLY PHE LEU ARG ASP GLU TYR THR THR SEQRES 14 A 301 LEU LYS GLU THR TRP ASP ARG ILE LEU SER THR ASP VAL SEQRES 15 A 301 ASP ALA THR TRP GLN TRP LYS ASN PHE SER GLY LEU GLN SEQRES 16 A 301 GLU VAL ARG SER HIS VAL PRO LYS PHE ASP ALA THR TRP SEQRES 17 A 301 ALA THR ALA ARG GLU VAL THR LEU LYS THR PHE ALA GLU SEQRES 18 A 301 ASP ASN SER ALA SER VAL GLN ALA THR MET TYR LYS MET SEQRES 19 A 301 ALA GLU GLN ILE LEU ALA ARG GLN GLN LEU ILE GLU THR SEQRES 20 A 301 VAL GLU TYR SER LEU PRO ASN LYS HIS TYR PHE GLU ILE SEQRES 21 A 301 ASP LEU SER TRP HIS LYS GLY LEU GLN ASN THR GLY LYS SEQRES 22 A 301 ASN ALA GLU VAL PHE ALA PRO GLN SER ASP PRO ASN GLY SEQRES 23 A 301 LEU ILE LYS CYS THR VAL GLY ARG SER SER LEU LYS SER SEQRES 24 A 301 LYS LEU MODRES 4CW0 SAC A 1 SER N-ACETYL-SERINE HET SAC A 1 18 HET MPD A1302 8 HET MUA A1303 13 HETNAM SAC N-ACETYL-SERINE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM MUA 9-METHYL URIC ACID FORMUL 1 SAC C5 H9 N O4 FORMUL 2 MPD C6 H14 O2 FORMUL 3 MUA C6 H6 N4 O3 FORMUL 4 HOH *582(H2 O) HELIX 1 1 ILE A 42 LYS A 48 1 7 HELIX 2 2 ASP A 50 ILE A 54 5 5 HELIX 3 3 ALA A 56 ASN A 71 1 16 HELIX 4 4 PRO A 75 TYR A 91 1 17 HELIX 5 5 GLY A 193 HIS A 200 1 8 HELIX 6 6 HIS A 200 ASP A 222 1 23 HELIX 7 7 SER A 226 GLN A 242 1 17 HELIX 8 8 THR A 271 ALA A 275 5 5 SHEET 1 AA 8 TYR A 8 LYS A 20 0 SHEET 2 AA 8 GLN A 27 GLY A 40 -1 O THR A 28 N HIS A 19 SHEET 3 AA 8 ILE A 94 HIS A 104 -1 N HIS A 95 O GLU A 39 SHEET 4 AA 8 LYS A 127 VAL A 135 -1 O ARG A 128 N CYS A 103 SHEET 5 AA 8 ILE A 140 LYS A 153 -1 O ASP A 141 N ASP A 133 SHEET 6 AA 8 LEU A 178 TRP A 188 -1 O LEU A 178 N LYS A 153 SHEET 7 AA 8 ILE A 245 ASN A 254 -1 N GLU A 246 O GLN A 187 SHEET 8 AA 8 GLY A 286 GLY A 293 -1 O GLY A 286 N ASN A 254 SHEET 1 AB 2 THR A 107 ILE A 111 0 SHEET 2 AB 2 LYS A 114 ILE A 121 -1 O LYS A 114 N ILE A 111 SHEET 1 AC 2 TYR A 257 GLU A 259 0 SHEET 2 AC 2 PHE A 278 PRO A 280 -1 O ALA A 279 N PHE A 258 LINK C ASAC A 1 N AALA A 2 1555 1555 1.33 LINK C BSAC A 1 N BALA A 2 1555 1555 1.33 CISPEP 1 THR A 74 PRO A 75 0 -16.76 CISPEP 2 THR A 74 PRO A 75 0 -14.80 CISPEP 3 ASP A 283 PRO A 284 0 -12.64 CISPEP 4 ASP A 283 PRO A 284 0 -12.31 SITE 1 AC1 12 ILE A 54 ALA A 56 THR A 57 ASP A 58 SITE 2 AC1 12 PHE A 159 LEU A 170 ARG A 176 SER A 226 SITE 3 AC1 12 VAL A 227 GLN A 228 ASN A 254 HOH A2547 SITE 1 AC2 6 GLN A 158 TRP A 174 SER A 192 HOH A2455 SITE 2 AC2 6 HOH A2502 HOH A2609 CRYST1 79.770 94.990 104.360 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012536 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010527 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009582 0.00000 HETATM 1 C1AASAC A 1 61.754 57.623 19.931 0.35 27.47 C ANISOU 1 C1AASAC A 1 3327 3745 3366 -157 1288 227 C HETATM 2 C1ABSAC A 1 61.923 57.555 19.923 0.35 28.06 C ANISOU 2 C1ABSAC A 1 3306 3745 3608 -162 1068 305 C HETATM 3 C2AASAC A 1 63.165 58.009 19.594 0.35 29.17 C ANISOU 3 C2AASAC A 1 3065 3936 4082 -356 477 82 C HETATM 4 C2ABSAC A 1 63.260 58.193 19.670 0.35 28.99 C ANISOU 4 C2ABSAC A 1 3252 3772 3990 -332 449 45 C HETATM 5 OACASAC A 1 61.199 56.651 19.470 0.35 25.46 O ANISOU 5 OACASAC A 1 2852 3661 3161 13 2260 -83 O HETATM 6 OACBSAC A 1 61.633 56.446 19.534 0.35 31.75 O ANISOU 6 OACBSAC A 1 4461 3755 3847 -25 1096 91 O HETATM 7 N ASAC A 1 61.114 58.423 20.768 0.50 27.49 N ANISOU 7 N ASAC A 1 3080 3581 3783 -228 990 36 N HETATM 8 N BSAC A 1 61.063 58.300 20.597 0.50 29.03 N ANISOU 8 N BSAC A 1 3193 3799 4038 -290 1052 170 N HETATM 9 CA ASAC A 1 59.782 58.017 21.307 0.50 21.79 C ANISOU 9 CA ASAC A 1 2961 2859 2457 72 761 67 C HETATM 10 CA BSAC A 1 59.708 57.808 20.984 0.50 24.20 C ANISOU 10 CA BSAC A 1 2998 3368 2829 24 831 122 C HETATM 11 C ASAC A 1 58.699 58.970 20.879 0.50 18.93 C ANISOU 11 C ASAC A 1 2919 2324 1949 -253 510 92 C HETATM 12 C BSAC A 1 58.680 58.889 20.815 0.50 19.35 C ANISOU 12 C BSAC A 1 2928 2397 2027 -399 543 141 C HETATM 13 O ASAC A 1 58.983 60.069 20.405 0.50 24.10 O ANISOU 13 O ASAC A 1 4208 2356 2592 -358 691 223 O HETATM 14 O BSAC A 1 59.006 60.029 20.485 0.50 23.17 O ANISOU 14 O BSAC A 1 4150 2407 2245 -420 772 235 O HETATM 15 CB ASAC A 1 59.842 57.901 22.824 0.50 21.57 C ANISOU 15 CB ASAC A 1 2700 2972 2523 368 -18 -62 C HETATM 16 CB BSAC A 1 59.725 57.320 22.429 0.50 25.32 C ANISOU 16 CB BSAC A 1 3406 3259 2955 -105 184 250 C HETATM 17 OG ASAC A 1 60.573 56.725 23.189 0.50 19.90 O ANISOU 17 OG ASAC A 1 2273 2648 2636 348 671 54 O HETATM 18 OG BSAC A 1 60.598 58.191 23.163 0.50 32.30 O ANISOU 18 OG BSAC A 1 3833 5965 2472 -798 146 -422 O