HEADER OXIDOREDUCTASE 01-APR-14 4CW3 TITLE CRYSTAL STRUCTURE OF COFACTOR-FREE URATE OXIDASE IN COMPLEX WITH THE TITLE 2 5-PEROXO DERIVATIVE OF 9-METYL URIC ACID (X-RAY DOSE, 665 KGY) COMPND MOL_ID: 1; COMPND 2 MOLECULE: URICASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: URATE OXIDASE; COMPND 5 EC: 1.7.3.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS FLAVUS; SOURCE 3 ORGANISM_TAXID: 5059; SOURCE 4 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 5 EXPRESSION_SYSTEM_COMMON: BAKER'S YEAST; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4932 KEYWDS OXIDOREDUCTASE, COFACTOR-FREE OXIDASE EXPDTA X-RAY DIFFRACTION AUTHOR S.BUI,R.A.STEINER REVDAT 4 21-FEB-18 4CW3 1 JRNL REVDAT 3 20-DEC-17 4CW3 1 JRNL REVDAT 2 17-DEC-14 4CW3 1 JRNL REVDAT 1 29-OCT-14 4CW3 0 JRNL AUTH S.BUI,D.VON STETTEN,P.G.JAMBRINA,T.PRANGE,N.COLLOC'H, JRNL AUTH 2 D.DE SANCTIS,A.ROYANT,E.ROSTA,R.A.STEINER JRNL TITL DIRECT EVIDENCE FOR A PEROXIDE INTERMEDIATE AND A REACTIVE JRNL TITL 2 ENZYME-SUBSTRATE-DIOXYGEN CONFIGURATION IN A COFACTOR-FREE JRNL TITL 3 OXIDASE. JRNL REF ANGEW. CHEM. INT. ED. ENGL. V. 53 13710 2014 JRNL REFN ESSN 1521-3773 JRNL PMID 25314114 JRNL DOI 10.1002/ANIE.201405485 REMARK 2 REMARK 2 RESOLUTION. 1.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 84283 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.110 REMARK 3 R VALUE (WORKING SET) : 0.109 REMARK 3 FREE R VALUE : 0.134 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4451 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.34 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.38 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6175 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 339 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2409 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 617 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 7.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.50000 REMARK 3 B22 (A**2) : -0.28000 REMARK 3 B33 (A**2) : -0.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.037 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.036 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.024 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.353 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.985 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.979 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2743 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2604 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3769 ; 1.500 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6041 ; 0.807 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 420 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3235 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 629 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1295 ; 1.997 ; 1.192 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1295 ; 1.997 ; 1.192 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1635 ; 2.309 ; 1.788 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1448 ; 2.229 ; 1.436 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5347 ; 2.187 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 151 ;45.464 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5748 ;13.982 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4CW3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-APR-14. REMARK 100 THE DEPOSITION ID IS D_1290060175. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 88740 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.340 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.73000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LIKE PDB CODE 4CW2, PH 8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.74900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.57850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 52.20750 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.74900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.57850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.20750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.74900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.57850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 52.20750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.74900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.57850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 52.20750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -123.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 79.49800 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 104.41500 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 79.49800 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 95.15700 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 95.15700 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 104.41500 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2343 O HOH A 2381 4566 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 122 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 122 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 118 27.48 -154.98 REMARK 500 SER A 124 168.88 90.73 REMARK 500 ASP A 175 104.35 -164.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2075 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH A2129 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A2130 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH A2155 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A2231 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A2234 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A2264 DISTANCE = 7.69 ANGSTROMS REMARK 525 HOH A2498 DISTANCE = 22.57 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MUA A 1305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: Binding site for residues XDS A1302 and OXY REMARK 800 A1304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CW0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF COFACTOR-FREE URATE OXIDASE ANAEROBICALLY REMARK 900 COMPLEXED WITH 9-METHYL URIC ACID REMARK 900 RELATED ID: 4CW2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF COFACTOR-FREE URATE OXIDASE IN COMPLEX WITH REMARK 900 THE 5-PEROXO DERIVATIVE OF 9-METYL URIC ACID (X-RAY DOSE, 2.5 KGY) REMARK 900 RELATED ID: 4CW6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF COFACTOR-FREE URATE OXIDASE IN COMPLEX WITH REMARK 900 THE 5-PEROXO DERIVATIVE OF 9-METYL URIC ACID (X-RAY DOSE, 92 KGY) DBREF 4CW3 A 1 301 UNP Q00511 URIC_ASPFL 2 302 SEQRES 1 A 301 SAC ALA VAL LYS ALA ALA ARG TYR GLY LYS ASP ASN VAL SEQRES 2 A 301 ARG VAL TYR LYS VAL HIS LYS ASP GLU LYS THR GLY VAL SEQRES 3 A 301 GLN THR VAL TYR GLU MET THR VAL CYS VAL LEU LEU GLU SEQRES 4 A 301 GLY GLU ILE GLU THR SER TYR THR LYS ALA ASP ASN SER SEQRES 5 A 301 VAL ILE VAL ALA THR ASP SER ILE LYS ASN THR ILE TYR SEQRES 6 A 301 ILE THR ALA LYS GLN ASN PRO VAL THR PRO PRO GLU LEU SEQRES 7 A 301 PHE GLY SER ILE LEU GLY THR HIS PHE ILE GLU LYS TYR SEQRES 8 A 301 ASN HIS ILE HIS ALA ALA HIS VAL ASN ILE VAL CYS HIS SEQRES 9 A 301 ARG TRP THR ARG MET ASP ILE ASP GLY LYS PRO HIS PRO SEQRES 10 A 301 HIS SER PHE ILE ARG ASP SER GLU GLU LYS ARG ASN VAL SEQRES 11 A 301 GLN VAL ASP VAL VAL GLU GLY LYS GLY ILE ASP ILE LYS SEQRES 12 A 301 SER SER LEU SER GLY LEU THR VAL LEU LYS SER THR ASN SEQRES 13 A 301 SER GLN PHE TRP GLY PHE LEU ARG ASP GLU TYR THR THR SEQRES 14 A 301 LEU LYS GLU THR TRP ASP ARG ILE LEU SER THR ASP VAL SEQRES 15 A 301 ASP ALA THR TRP GLN TRP LYS ASN PHE SER GLY LEU GLN SEQRES 16 A 301 GLU VAL ARG SER HIS VAL PRO LYS PHE ASP ALA THR TRP SEQRES 17 A 301 ALA THR ALA ARG GLU VAL THR LEU LYS THR PHE ALA GLU SEQRES 18 A 301 ASP ASN SER ALA SER VAL GLN ALA THR MET TYR LYS MET SEQRES 19 A 301 ALA GLU GLN ILE LEU ALA ARG GLN GLN LEU ILE GLU THR SEQRES 20 A 301 VAL GLU TYR SER LEU PRO ASN LYS HIS TYR PHE GLU ILE SEQRES 21 A 301 ASP LEU SER TRP HIS LYS GLY LEU GLN ASN THR GLY LYS SEQRES 22 A 301 ASN ALA GLU VAL PHE ALA PRO GLN SER ASP PRO ASN GLY SEQRES 23 A 301 LEU ILE LYS CYS THR VAL GLY ARG SER SER LEU LYS SER SEQRES 24 A 301 LYS LEU MODRES 4CW3 SAC A 1 SER N-ACETYL-SERINE HET SAC A 1 18 HET XDS A1302 15 HET MPD A1303 8 HET OXY A1304 2 HET MUA A1305 13 HETNAM SAC N-ACETYL-SERINE HETNAM XDS (5S)-5-(DIOXIDANYL)-9-METHYL-7H-PURINE-2,6,8-TRIONE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM OXY OXYGEN MOLECULE HETNAM MUA 9-METHYL URIC ACID FORMUL 1 SAC C5 H9 N O4 FORMUL 2 XDS C6 H6 N4 O5 FORMUL 3 MPD C6 H14 O2 FORMUL 4 OXY O2 FORMUL 5 MUA C6 H6 N4 O3 FORMUL 6 HOH *617(H2 O) HELIX 1 1 ILE A 42 LYS A 48 1 7 HELIX 2 2 ASP A 50 ILE A 54 5 5 HELIX 3 3 ALA A 56 ASN A 71 1 16 HELIX 4 4 PRO A 75 TYR A 91 1 17 HELIX 5 5 GLY A 193 HIS A 200 1 8 HELIX 6 6 HIS A 200 ASP A 222 1 23 HELIX 7 7 SER A 226 GLN A 242 1 17 HELIX 8 8 THR A 271 ALA A 275 5 5 SHEET 1 AA 8 TYR A 8 LYS A 20 0 SHEET 2 AA 8 GLN A 27 GLY A 40 -1 O THR A 28 N HIS A 19 SHEET 3 AA 8 ILE A 94 HIS A 104 -1 N HIS A 95 O GLU A 39 SHEET 4 AA 8 LYS A 127 VAL A 135 -1 O ARG A 128 N CYS A 103 SHEET 5 AA 8 ILE A 140 LYS A 153 -1 O ASP A 141 N ASP A 133 SHEET 6 AA 8 LEU A 178 TRP A 188 -1 O LEU A 178 N LYS A 153 SHEET 7 AA 8 ILE A 245 ASN A 254 -1 N GLU A 246 O GLN A 187 SHEET 8 AA 8 GLY A 286 GLY A 293 -1 O GLY A 286 N ASN A 254 SHEET 1 AB 2 THR A 107 ILE A 111 0 SHEET 2 AB 2 LYS A 114 ILE A 121 -1 O LYS A 114 N ILE A 111 SHEET 1 AC 2 TYR A 257 GLU A 259 0 SHEET 2 AC 2 PHE A 278 PRO A 280 -1 O ALA A 279 N PHE A 258 LINK C ASAC A 1 N AALA A 2 1555 1555 1.33 LINK C BSAC A 1 N BALA A 2 1555 1555 1.32 LINK O1 XDS A1302 O2 OXY A1304 1555 1555 1.22 CISPEP 1 THR A 74 PRO A 75 0 -16.54 CISPEP 2 THR A 74 PRO A 75 0 -15.33 CISPEP 3 ASP A 283 PRO A 284 0 -11.06 CISPEP 4 ASP A 283 PRO A 284 0 -12.52 SITE 1 AC1 7 GLN A 158 TRP A 174 SER A 192 HOH A2393 SITE 2 AC1 7 HOH A2468 HOH A2515 HOH A2617 SITE 1 AC2 13 ILE A 54 ALA A 56 THR A 57 ASP A 58 SITE 2 AC2 13 PHE A 159 LEU A 170 ARG A 176 SER A 226 SITE 3 AC2 13 VAL A 227 GLN A 228 ASN A 254 XDS A1302 SITE 4 AC2 13 OXY A1304 SITE 1 AC3 15 ILE A 54 ALA A 56 THR A 57 ASP A 58 SITE 2 AC3 15 PHE A 159 LEU A 170 ARG A 176 SER A 226 SITE 3 AC3 15 VAL A 227 GLN A 228 ASN A 254 HIS A 256 SITE 4 AC3 15 GLY A 286 ILE A 288 MUA A1305 CRYST1 79.498 95.157 104.415 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012579 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010509 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009577 0.00000 HETATM 1 C1AASAC A 1 61.646 57.732 19.947 0.35 25.47 C ANISOU 1 C1AASAC A 1 2894 3301 3480 -240 982 282 C HETATM 2 C1ABSAC A 1 61.772 57.687 19.928 0.35 25.74 C ANISOU 2 C1ABSAC A 1 2909 3260 3608 -231 845 303 C HETATM 3 C2AASAC A 1 63.045 58.164 19.625 0.35 24.10 C ANISOU 3 C2AASAC A 1 2599 3202 3354 -196 362 96 C HETATM 4 C2ABSAC A 1 63.119 58.290 19.662 0.35 24.00 C ANISOU 4 C2ABSAC A 1 2681 3118 3319 -188 357 79 C HETATM 5 OACASAC A 1 61.127 56.743 19.480 0.35 25.82 O ANISOU 5 OACASAC A 1 2947 3615 3245 110 1602 -546 O HETATM 6 OACBSAC A 1 61.417 56.619 19.482 0.35 29.64 O ANISOU 6 OACBSAC A 1 3977 3552 3733 -23 1245 -323 O HETATM 7 N ASAC A 1 60.988 58.535 20.770 0.50 26.42 N ANISOU 7 N ASAC A 1 2904 3362 3769 -233 732 79 N HETATM 8 N BSAC A 1 60.969 58.426 20.674 0.50 26.95 N ANISOU 8 N BSAC A 1 2956 3456 3824 -233 749 155 N HETATM 9 CA ASAC A 1 59.673 58.118 21.341 0.50 21.26 C ANISOU 9 CA ASAC A 1 2704 2801 2571 1 540 66 C HETATM 10 CA BSAC A 1 59.605 57.919 20.996 0.50 22.74 C ANISOU 10 CA BSAC A 1 2721 2947 2970 -41 582 94 C HETATM 11 C ASAC A 1 58.582 59.050 20.898 0.50 19.19 C ANISOU 11 C ASAC A 1 2596 2418 2278 -231 645 177 C HETATM 12 C BSAC A 1 58.565 58.985 20.828 0.50 19.15 C ANISOU 12 C BSAC A 1 2593 2466 2215 -301 672 192 C HETATM 13 O ASAC A 1 58.853 60.166 20.441 0.50 22.91 O ANISOU 13 O ASAC A 1 3639 2557 2506 -512 1002 161 O HETATM 14 O BSAC A 1 58.873 60.141 20.506 0.50 22.74 O ANISOU 14 O BSAC A 1 3604 2578 2457 -531 1041 152 O HETATM 15 CB ASAC A 1 59.767 58.054 22.859 0.50 20.61 C ANISOU 15 CB ASAC A 1 2404 2816 2609 37 -133 -122 C HETATM 16 CB BSAC A 1 59.596 57.342 22.407 0.50 23.39 C ANISOU 16 CB BSAC A 1 2897 2985 3002 32 117 208 C HETATM 17 OG ASAC A 1 60.463 56.859 23.237 0.50 20.79 O ANISOU 17 OG ASAC A 1 2354 2813 2733 325 98 -345 O HETATM 18 OG BSAC A 1 60.380 58.186 23.249 0.50 30.13 O ANISOU 18 OG BSAC A 1 4089 4616 2742 -675 -90 -45 O