HEADER VIRAL PROTEIN 01-APR-14 4CW8 TITLE STRUCTURE OF THE CARBOXY-TERMINAL DOMAIN OF THE TURKEY TYPE 3 TITLE 2 SIADENOVIRUS FIBRE, VIRULENT FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBER KNOB DOMAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HEAD DOMAIN, RESIDUES 12-165; COMPND 5 SYNONYM: TURKEY ADENOVIRUS TYPE 3 FIBRE; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TURKEY ADENOVIRUS 3; SOURCE 3 ORGANISM_TAXID: 41678; SOURCE 4 STRAIN: AVIRULENT HEMORRHAGIC ENTERITIS VACCINE, LIVE VIRUS; SOURCE 5 VARIANT: VETERINARY LICENSE NO. 337, SERIAL NO. 2081; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET28A; SOURCE 11 OTHER_DETAILS: ARKO LABORATORIES, JEWELL IA KEYWDS VIRAL PROTEIN, BETA-SANDWICH EXPDTA X-RAY DIFFRACTION AUTHOR A.K.SINGH,M.J.VAN RAAIJ REVDAT 4 20-DEC-23 4CW8 1 REMARK REVDAT 3 17-JAN-18 4CW8 1 JRNL REVDAT 2 14-OCT-15 4CW8 1 JRNL REVDAT 1 08-APR-15 4CW8 0 JRNL AUTH A.K.SINGH,M.A.BERBIS,M.Z.BALLMANN,M.KILCOYNE,M.MENENDEZ, JRNL AUTH 2 T.H.NGUYEN,L.JOSHI,F.J.CANADA,J.JIMENEZ-BARBERO,M.BENKO, JRNL AUTH 3 B.HARRACH,M.J.VAN RAAIJ JRNL TITL STRUCTURE AND SIALYLLACTOSE BINDING OF THE CARBOXY-TERMINAL JRNL TITL 2 HEAD DOMAIN OF THE FIBRE FROM A SIADENOVIRUS, TURKEY JRNL TITL 3 ADENOVIRUS 3. JRNL REF PLOS ONE V. 10 39339 2015 JRNL REFN ESSN 1932-6203 JRNL PMID 26418008 JRNL DOI 10.1371/JOURNAL.PONE.0139339 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 6962 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 334 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.42 REMARK 3 REFLECTION IN BIN (WORKING SET) : 984 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 40 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1091 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 40 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.318 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.226 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.231 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.997 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1120 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1125 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1522 ; 1.553 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2576 ; 0.761 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 180 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1242 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 255 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 174 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1107 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 516 ; 0.173 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 690 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 29 ; 0.196 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.134 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.167 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 53 ; 0.171 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.106 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 551 ; 5.098 ; 6.162 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 550 ; 5.089 ; 6.147 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 687 ; 7.325 ; 9.206 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 569 ; 5.528 ; 6.819 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 835 ; 8.471 ; 9.982 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 4CW8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-APR-14. REMARK 100 THE DEPOSITION ID IS D_1290060184. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : CHANNEL-CUT DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR (CINEL), REMARK 200 CRYOCOOLED, 6MM GAP REMARK 200 OPTICS : PAIR OF KB MIRRORS FOR REMARK 200 ADJUSTABLE FOCUSING, PLANE- REMARK 200 ELLIPSOIDAL, THREE COATING REMARK 200 STRIPES (SI, RH, IR) - IRELEC REMARK 200 INSYNC REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7327 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 31.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.20 REMARK 200 R MERGE FOR SHELL (I) : 0.53000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 3ZPE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MM [2-(N-MORPHOLINO)ETHANESULFONIC REMARK 280 ACID]-NAOH PH 6.0, 1M (NH4)2HPO4, 0.1 M IMIDAZOLE PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 49.48150 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 49.48150 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 49.48150 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 49.48150 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 49.48150 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 49.48150 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 49.48150 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 49.48150 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 49.48150 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 49.48150 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 49.48150 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 49.48150 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 49.48150 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 49.48150 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 49.48150 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 49.48150 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 49.48150 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 49.48150 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 49.48150 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 49.48150 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 49.48150 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 49.48150 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 49.48150 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 49.48150 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 49.48150 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 49.48150 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 49.48150 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 49.48150 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 49.48150 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 49.48150 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 49.48150 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 49.48150 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 49.48150 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 49.48150 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 49.48150 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 49.48150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 1.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2001 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 265 REMARK 465 GLY A 266 REMARK 465 SER A 267 REMARK 465 SER A 268 REMARK 465 HIS A 269 REMARK 465 HIS A 270 REMARK 465 HIS A 271 REMARK 465 HIS A 272 REMARK 465 HIS A 273 REMARK 465 HIS A 274 REMARK 465 SER A 275 REMARK 465 SER A 276 REMARK 465 GLY A 277 REMARK 465 LEU A 278 REMARK 465 VAL A 279 REMARK 465 PRO A 280 REMARK 465 ARG A 281 REMARK 465 GLY A 282 REMARK 465 SER A 283 REMARK 465 HIS A 284 REMARK 465 MET A 285 REMARK 465 ALA A 286 REMARK 465 SER A 287 REMARK 465 MET A 288 REMARK 465 THR A 289 REMARK 465 GLY A 290 REMARK 465 GLY A 291 REMARK 465 GLN A 292 REMARK 465 GLN A 293 REMARK 465 MET A 294 REMARK 465 GLY A 295 REMARK 465 ARG A 296 REMARK 465 GLY A 297 REMARK 465 SER A 298 REMARK 465 GLU A 299 REMARK 465 PHE A 300 REMARK 465 ALA A 301 REMARK 465 SER A 302 REMARK 465 ILE A 303 REMARK 465 GLY A 304 REMARK 465 PRO A 305 REMARK 465 PRO A 306 REMARK 465 THR A 307 REMARK 465 THR A 308 REMARK 465 MET A 309 REMARK 465 VAL A 310 REMARK 465 THR A 311 REMARK 465 GLY A 312 REMARK 465 THR A 313 REMARK 465 VAL A 314 REMARK 465 SER A 315 REMARK 465 PRO A 316 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 339 37.29 -141.12 REMARK 500 ALA A 341 -51.16 67.09 REMARK 500 PRO A 357 1.87 -55.13 REMARK 500 ASN A 422 -122.75 54.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 317 ARG A 318 -110.33 REMARK 500 TRP A 339 ASP A 340 -116.62 REMARK 500 ASP A 340 ALA A 341 -106.65 REMARK 500 SER A 364 ILE A 365 149.20 REMARK 500 ILE A 453 GLY A 454 140.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2037 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH A2038 DISTANCE = 8.00 ANGSTROMS REMARK 525 HOH A2039 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A2040 DISTANCE = 7.07 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1455 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1456 REMARK 999 REMARK 999 SEQUENCE REMARK 999 N-TERMINAL HIS-TAG, METHIONINE 354 WAS MUTATED TO REMARK 999 ISOLEUCINE AND METHIONINE 376 WAS MUTATED TO THREONINE TO REMARK 999 MAKE THE SEQUENCE CONFORM TO THE VIRULENT VERSION DBREF 4CW8 A 301 454 UNP Q0GF90 Q0GF90_9ADEN 12 165 SEQADV 4CW8 MET A 265 UNP Q0GF90 EXPRESSION TAG SEQADV 4CW8 GLY A 266 UNP Q0GF90 EXPRESSION TAG SEQADV 4CW8 SER A 267 UNP Q0GF90 EXPRESSION TAG SEQADV 4CW8 SER A 268 UNP Q0GF90 EXPRESSION TAG SEQADV 4CW8 HIS A 269 UNP Q0GF90 EXPRESSION TAG SEQADV 4CW8 HIS A 270 UNP Q0GF90 EXPRESSION TAG SEQADV 4CW8 HIS A 271 UNP Q0GF90 EXPRESSION TAG SEQADV 4CW8 HIS A 272 UNP Q0GF90 EXPRESSION TAG SEQADV 4CW8 HIS A 273 UNP Q0GF90 EXPRESSION TAG SEQADV 4CW8 HIS A 274 UNP Q0GF90 EXPRESSION TAG SEQADV 4CW8 SER A 275 UNP Q0GF90 EXPRESSION TAG SEQADV 4CW8 SER A 276 UNP Q0GF90 EXPRESSION TAG SEQADV 4CW8 GLY A 277 UNP Q0GF90 EXPRESSION TAG SEQADV 4CW8 LEU A 278 UNP Q0GF90 EXPRESSION TAG SEQADV 4CW8 VAL A 279 UNP Q0GF90 EXPRESSION TAG SEQADV 4CW8 PRO A 280 UNP Q0GF90 EXPRESSION TAG SEQADV 4CW8 ARG A 281 UNP Q0GF90 EXPRESSION TAG SEQADV 4CW8 GLY A 282 UNP Q0GF90 EXPRESSION TAG SEQADV 4CW8 SER A 283 UNP Q0GF90 EXPRESSION TAG SEQADV 4CW8 HIS A 284 UNP Q0GF90 EXPRESSION TAG SEQADV 4CW8 MET A 285 UNP Q0GF90 EXPRESSION TAG SEQADV 4CW8 ALA A 286 UNP Q0GF90 EXPRESSION TAG SEQADV 4CW8 SER A 287 UNP Q0GF90 EXPRESSION TAG SEQADV 4CW8 MET A 288 UNP Q0GF90 EXPRESSION TAG SEQADV 4CW8 THR A 289 UNP Q0GF90 EXPRESSION TAG SEQADV 4CW8 GLY A 290 UNP Q0GF90 EXPRESSION TAG SEQADV 4CW8 GLY A 291 UNP Q0GF90 EXPRESSION TAG SEQADV 4CW8 GLN A 292 UNP Q0GF90 EXPRESSION TAG SEQADV 4CW8 GLN A 293 UNP Q0GF90 EXPRESSION TAG SEQADV 4CW8 MET A 294 UNP Q0GF90 EXPRESSION TAG SEQADV 4CW8 GLY A 295 UNP Q0GF90 EXPRESSION TAG SEQADV 4CW8 ARG A 296 UNP Q0GF90 EXPRESSION TAG SEQADV 4CW8 GLY A 297 UNP Q0GF90 EXPRESSION TAG SEQADV 4CW8 SER A 298 UNP Q0GF90 EXPRESSION TAG SEQADV 4CW8 GLU A 299 UNP Q0GF90 EXPRESSION TAG SEQADV 4CW8 PHE A 300 UNP Q0GF90 EXPRESSION TAG SEQADV 4CW8 ILE A 354 UNP Q0GF90 MET 65 ENGINEERED MUTATION SEQADV 4CW8 THR A 376 UNP Q0GF90 MET 87 ENGINEERED MUTATION SEQRES 1 A 190 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 190 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 A 190 GLY GLN GLN MET GLY ARG GLY SER GLU PHE ALA SER ILE SEQRES 4 A 190 GLY PRO PRO THR THR MET VAL THR GLY THR VAL SER PRO SEQRES 5 A 190 GLY ARG ALA THR ASN GLY GLN PHE VAL THR LYS THR ALA SEQRES 6 A 190 LYS VAL LEU ARG TYR LYS PHE VAL ARG TRP ASP ALA LEU SEQRES 7 A 190 LEU ILE ILE GLN PHE ILE ASP ASN ILE GLY VAL ILE GLU SEQRES 8 A 190 ASN PRO THR PHE TYR ARG ASN LYS SER ILE GLU LEU ARG SEQRES 9 A 190 SER ALA ASP PHE LEU SER PRO THR LEU ASN ASN THR TYR SEQRES 10 A 190 ILE VAL PRO LEU ASN GLY GLY VAL ARG VAL GLU SER PRO SEQRES 11 A 190 THR ILE PRO VAL GLN LEU GLU VAL ILE LEU GLU ASN ASN SEQRES 12 A 190 SER SER PHE ILE GLN VAL GLY PHE VAL ARG LEU THR VAL SEQRES 13 A 190 LYS ASN GLY ASN PRO HIS MET ILE ILE GLN CYS ASN PRO SEQRES 14 A 190 VAL PRO GLY ASN ILE LYS MET ILE LYS ILE LYS SER VAL SEQRES 15 A 190 MET LEU PHE THR CYS LEU ILE GLY HET PO4 A1455 5 HET PO4 A1456 5 HETNAM PO4 PHOSPHATE ION FORMUL 2 PO4 2(O4 P 3-) FORMUL 4 HOH *40(H2 O) HELIX 1 1 ALA A 370 PHE A 372 5 3 SHEET 1 AA10 ILE A 365 ARG A 368 0 SHEET 2 AA10 ILE A 438 ILE A 443 -1 O ILE A 441 N LEU A 367 SHEET 3 AA10 ILE A 396 LEU A 404 -1 O GLU A 401 N LYS A 442 SHEET 4 AA10 SER A 409 LYS A 421 -1 O PHE A 410 N VAL A 402 SHEET 5 AA10 ASN A 424 GLN A 430 -1 O ASN A 424 N LYS A 421 SHEET 6 AA10 THR A 380 GLY A 387 -1 O TYR A 381 N ILE A 429 SHEET 7 AA10 THR A 320 THR A 326 -1 O VAL A 325 N ASN A 386 SHEET 8 AA10 VAL A 331 ARG A 338 -1 O LEU A 332 N PHE A 324 SHEET 9 AA10 LEU A 342 PHE A 347 -1 O ILE A 344 N VAL A 337 SHEET 10 AA10 LEU A 448 LEU A 452 -1 O PHE A 449 N ILE A 345 SHEET 1 AB 2 VAL A 353 ASN A 356 0 SHEET 2 AB 2 PHE A 359 ARG A 361 -1 O PHE A 359 N ASN A 356 CISPEP 1 SER A 374 PRO A 375 0 -11.61 SITE 1 AC1 4 ARG A 368 LYS A 421 ASN A 422 LYS A 439 SITE 1 AC2 6 ASN A 362 LYS A 363 SER A 364 GLU A 366 SITE 2 AC2 6 ASN A 386 LYS A 442 CRYST1 98.963 98.963 98.963 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010105 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010105 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010105 0.00000