HEADER ELECTRON TRANSPORT 04-APR-14 4CX9 TITLE THE 5-COORDINATE PROXIMAL NO COMPLEX OF CYTOCHROME C PRIME FROM TITLE 2 SHEWANELLA FRIGIDIMARINA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C, CLASS II; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 22-149; COMPND 5 SYNONYM: CYTOCHROME C PRIME; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA FRIGIDIMARINA; SOURCE 3 ORGANISM_TAXID: 56812; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMMB503EH KEYWDS ELECTRON TRANSPORT, NITROSYL, PROXIMAL, GAS SENSOR EXPDTA X-RAY DIFFRACTION AUTHOR A.A.MANOLE,D.KEKILLI,P.S.DOBBIN,M.A.HOUGH REVDAT 3 20-DEC-23 4CX9 1 REMARK LINK REVDAT 2 03-JUN-15 4CX9 1 JRNL REVDAT 1 08-APR-15 4CX9 0 JRNL AUTH A.MANOLE,D.KEKILLI,D.A.SVISTUNENKO,M.T.WILSON,P.S.DOBBIN, JRNL AUTH 2 M.A.HOUGH JRNL TITL CONFORMATIONAL CONTROL OF THE BINDING OF DIATOMIC GASES TO JRNL TITL 2 CYTOCHROME C'. JRNL REF J.BIOL.INORG.CHEM. V. 20 675 2015 JRNL REFN ISSN 0949-8257 JRNL PMID 25792378 JRNL DOI 10.1007/S00775-015-1253-7 REMARK 2 REMARK 2 RESOLUTION. 1.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 43772 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2339 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.43 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3190 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2770 REMARK 3 BIN FREE R VALUE SET COUNT : 187 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1934 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 130 REMARK 3 SOLVENT ATOMS : 305 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.28000 REMARK 3 B22 (A**2) : 0.51000 REMARK 3 B33 (A**2) : 0.78000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.062 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.064 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.310 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2158 ; 0.016 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1989 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2934 ; 2.131 ; 2.039 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4589 ; 0.897 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 294 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2620 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 482 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1046 ; 1.253 ; 1.343 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1044 ; 1.233 ; 1.340 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1306 ; 1.865 ; 2.004 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1112 ; 1.823 ; 1.522 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 4CX9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-APR-14. REMARK 100 THE DEPOSITION ID IS D_1290060251. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : SI MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46165 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.430 REMARK 200 RESOLUTION RANGE LOW (A) : 40.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.77000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2YLI REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2M AM SULFATE, 0.1M HEPES PH7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.65000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.06850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.13950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.06850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.65000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.13950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 3 CD OE1 OE2 REMARK 480 GLU A 4 CD OE1 OE2 REMARK 480 LYS A 53 CE NZ REMARK 480 GLN A 76 OE1 NE2 REMARK 480 LYS A 108 CE NZ REMARK 480 GLU B 3 CG CD OE1 OE2 REMARK 480 LYS B 31 CG CD CE NZ REMARK 480 LYS B 116 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 116 O HOH B 2103 4555 1.55 REMARK 500 O HOH A 2073 O HOH B 2041 4455 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 53 CD LYS A 53 CE -0.159 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 103 106.44 -54.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2070 DISTANCE = 6.43 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A1129 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 NO A1130 N REMARK 620 2 HEC A1129 NA 93.8 REMARK 620 3 HEC A1129 NB 96.9 88.8 REMARK 620 4 HEC A1129 NC 98.6 167.7 89.8 REMARK 620 5 HEC A1129 ND 94.0 86.9 168.5 92.1 REMARK 620 6 NO A1130 O 20.6 107.7 111.6 84.2 79.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B1129 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 NO B1130 O REMARK 620 2 HEC B1129 NA 110.1 REMARK 620 3 HEC B1129 NB 110.8 90.6 REMARK 620 4 HEC B1129 NC 80.7 168.6 88.9 REMARK 620 5 HEC B1129 ND 80.4 87.0 168.7 91.4 REMARK 620 6 NO B1130 N 24.2 94.8 93.1 96.6 98.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 1129 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO A 1130 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC B 1129 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO B 1130 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1131 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1132 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1133 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1131 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1134 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1132 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1135 DBREF 4CX9 A 1 128 UNP Q07Z15 Q07Z15_SHEFN 22 149 DBREF 4CX9 B 1 128 UNP Q07Z15 Q07Z15_SHEFN 22 149 SEQRES 1 A 128 ASN PHE GLU GLU PRO ALA ASP ALA ILE GLU TYR ARG GLN SEQRES 2 A 128 ALA ALA PHE GLY LEU ILE ALA TYR ASN PHE GLY ASP MET SEQRES 3 A 128 GLY ALA MET LEU LYS GLY LYS LYS PRO PHE ASP ALA ALA SEQRES 4 A 128 VAL PHE SER THR ARG ALA ASP ASN VAL ALA ALA LEU SER SEQRES 5 A 128 LYS ILE PRO HIS GLU GLY PHE ILE ALA GLY SER ASP LYS SEQRES 6 A 128 GLY ASP THR GLU ALA LEU ALA LYS ILE TRP GLN ASP LYS SEQRES 7 A 128 ALA ASP PHE ASP SER LYS MET THR ALA PHE GLN ASP ASN SEQRES 8 A 128 ALA ALA ALA LEU ALA VAL ALA ALA LYS SER SER ASP GLN SEQRES 9 A 128 ASN ASN ILE LYS GLN ALA PHE ALA ASN THR GLY LYS SER SEQRES 10 A 128 CYS LYS GLY CYS HIS ASP VAL TYR LYS LYS ASP SEQRES 1 B 128 ASN PHE GLU GLU PRO ALA ASP ALA ILE GLU TYR ARG GLN SEQRES 2 B 128 ALA ALA PHE GLY LEU ILE ALA TYR ASN PHE GLY ASP MET SEQRES 3 B 128 GLY ALA MET LEU LYS GLY LYS LYS PRO PHE ASP ALA ALA SEQRES 4 B 128 VAL PHE SER THR ARG ALA ASP ASN VAL ALA ALA LEU SER SEQRES 5 B 128 LYS ILE PRO HIS GLU GLY PHE ILE ALA GLY SER ASP LYS SEQRES 6 B 128 GLY ASP THR GLU ALA LEU ALA LYS ILE TRP GLN ASP LYS SEQRES 7 B 128 ALA ASP PHE ASP SER LYS MET THR ALA PHE GLN ASP ASN SEQRES 8 B 128 ALA ALA ALA LEU ALA VAL ALA ALA LYS SER SER ASP GLN SEQRES 9 B 128 ASN ASN ILE LYS GLN ALA PHE ALA ASN THR GLY LYS SER SEQRES 10 B 128 CYS LYS GLY CYS HIS ASP VAL TYR LYS LYS ASP HET NO A1130 2 HET HEC A1129 43 HET SO4 A1131 5 HET SO4 A1132 5 HET GOL A1133 6 HET GOL A1134 6 HET GOL A1135 6 HET HEC B1129 43 HET NO B1130 2 HET GOL B1131 6 HET GOL B1132 6 HETNAM NO NITRIC OXIDE HETNAM HEC HEME C HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN NO NITROGEN MONOXIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NO 2(N O) FORMUL 4 HEC 2(C34 H34 FE N4 O4) FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 GOL 5(C3 H8 O3) FORMUL 14 HOH *305(H2 O) HELIX 1 1 GLU A 4 LYS A 31 1 28 HELIX 2 2 ASP A 37 SER A 52 1 16 HELIX 3 3 LYS A 53 PHE A 59 5 7 HELIX 4 4 ALA A 72 ASP A 77 1 6 HELIX 5 5 ASP A 77 ALA A 99 1 23 HELIX 6 6 ASP A 103 LYS A 126 1 24 HELIX 7 7 GLU B 4 LYS B 31 1 28 HELIX 8 8 ASP B 37 SER B 52 1 16 HELIX 9 9 LYS B 53 PHE B 59 5 7 HELIX 10 10 ALA B 72 ASP B 77 1 6 HELIX 11 11 ASP B 77 ALA B 99 1 23 HELIX 12 12 ASP B 103 LYS B 126 1 24 LINK SG CYS A 118 CAB HEC A1129 1555 1555 1.93 LINK SG CYS A 121 CAC HEC A1129 1555 1555 1.88 LINK SG CYS B 118 CAB HEC B1129 1555 1555 1.93 LINK SG CYS B 121 CAC HEC B1129 1555 1555 1.98 LINK FE HEC A1129 N NO A1130 1555 1555 1.77 LINK FE HEC A1129 O NO A1130 1555 1555 2.67 LINK FE HEC B1129 O NO B1130 1555 1555 2.65 LINK FE HEC B1129 N NO B1130 1555 1555 1.91 SITE 1 AC1 17 ARG A 12 GLN A 13 PHE A 16 ILE A 19 SITE 2 AC1 17 ALA A 20 PHE A 59 THR A 68 GLU A 69 SITE 3 AC1 17 MET A 85 PHE A 88 SER A 117 CYS A 118 SITE 4 AC1 17 CYS A 121 LYS A 126 NO A1130 HOH A2165 SITE 5 AC1 17 HOH A2166 SITE 1 AC2 2 HIS A 122 HEC A1129 SITE 1 AC3 17 ARG B 12 GLN B 13 PHE B 16 ALA B 20 SITE 2 AC3 17 PHE B 59 THR B 68 GLU B 69 PHE B 81 SITE 3 AC3 17 MET B 85 PHE B 88 SER B 117 CYS B 118 SITE 4 AC3 17 CYS B 121 LYS B 126 NO B1130 GOL B1131 SITE 5 AC3 17 HOH B2131 SITE 1 AC4 4 HIS B 122 LYS B 126 HEC B1129 GOL B1131 SITE 1 AC5 5 LYS A 31 LYS A 33 HOH A2055 HOH A2101 SITE 2 AC5 5 HOH A2169 SITE 1 AC6 7 ILE A 60 ALA A 61 SER A 101 SER A 102 SITE 2 AC6 7 GOL A1134 HOH A2095 HOH A2171 SITE 1 AC7 7 PHE A 36 ASP A 37 ALA A 38 GLU A 57 SITE 2 AC7 7 HOH A2090 HOH A2091 HOH A2172 SITE 1 AC8 4 LYS B 126 HEC B1129 NO B1130 HOH B2132 SITE 1 AC9 11 HIS A 56 GLU A 57 PHE A 59 ILE A 60 SITE 2 AC9 11 LYS A 78 LYS A 100 SER A 102 SO4 A1132 SITE 3 AC9 11 HOH A2092 HOH A2093 HOH A2136 SITE 1 BC1 10 THR A 43 SER A 83 THR A 86 ALA A 87 SITE 2 BC1 10 ASP A 90 GOL A1135 HOH A2075 HOH A2126 SITE 3 BC1 10 LYS B 53 GLN B 89 SITE 1 BC2 9 ALA A 87 ASP A 90 HOH A2130 HIS B 56 SITE 2 BC2 9 ASP B 82 MET B 85 THR B 86 GLN B 89 SITE 3 BC2 9 GOL B1132 CRYST1 55.300 58.279 76.137 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018083 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017159 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013134 0.00000