HEADER TRANSFERASE 08-APR-14 4CXQ TITLE MYCOBATERIUM TUBERCULOSIS TRANSAMINASE BIOA COMPLEXED WITH SUBSTRATE TITLE 2 KAPA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 7,8-DIAMINO-PELARGONIC ACID AMINOTRANSFERASE, DAPA AT, DAPA COMPND 5 AMINOTRANSFERASE, 7,8-DIAMINONONANOATE SYNTHASE, DANS, DIAMINOPEL COMPND 6 ARGONIC ACID SYNTHASE, MYCOBACTERIUM TUBERCULOSIS BIOA; COMPND 7 EC: 2.6.1.62; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, TRANSAMINASE, TUBERCULOSIS EXPDTA X-RAY DIFFRACTION AUTHOR R.DAI,D.J.WILSON,T.W.GEDERS,C.C.ALDRICH,B.C.FINZEL REVDAT 4 20-DEC-23 4CXQ 1 REMARK LINK REVDAT 3 06-FEB-19 4CXQ 1 REMARK REVDAT 2 30-JAN-19 4CXQ 1 REMARK REVDAT 1 23-APR-14 4CXQ 0 SPRSDE 23-APR-14 4CXQ 4MQN JRNL AUTH R.DAI,D.J.WILSON,T.W.GEDERS,C.C.ALDRICH,B.C.FINZEL JRNL TITL INHIBITION OF MYCOBACTERIUM TUBERCULOSIS TRANSAMINASE BIOA JRNL TITL 2 BY ARYL HYDRAZINES AND HYDRAZIDES. JRNL REF CHEMBIOCHEM V. 15 575 2014 JRNL REFN ISSN 1439-4227 JRNL PMID 24482078 JRNL DOI 10.1002/CBIC.201300748 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 79008 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3956 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.5599 - 5.4616 0.99 2937 150 0.1508 0.1580 REMARK 3 2 5.4616 - 4.3366 1.00 2802 137 0.1211 0.1600 REMARK 3 3 4.3366 - 3.7889 0.99 2745 150 0.1247 0.1590 REMARK 3 4 3.7889 - 3.4427 1.00 2733 153 0.1486 0.1883 REMARK 3 5 3.4427 - 3.1960 0.99 2755 123 0.1589 0.1863 REMARK 3 6 3.1960 - 3.0077 1.00 2686 142 0.1651 0.2031 REMARK 3 7 3.0077 - 2.8571 0.99 2720 138 0.1615 0.1898 REMARK 3 8 2.8571 - 2.7327 0.99 2674 152 0.1671 0.1943 REMARK 3 9 2.7327 - 2.6275 0.99 2672 156 0.1602 0.2047 REMARK 3 10 2.6275 - 2.5369 0.99 2687 138 0.1663 0.2230 REMARK 3 11 2.5369 - 2.4576 0.99 2688 142 0.1659 0.2065 REMARK 3 12 2.4576 - 2.3873 0.99 2683 127 0.1594 0.2200 REMARK 3 13 2.3873 - 2.3245 0.99 2649 150 0.1579 0.2080 REMARK 3 14 2.3245 - 2.2678 0.99 2662 152 0.1528 0.1939 REMARK 3 15 2.2678 - 2.2162 0.99 2633 149 0.1572 0.1882 REMARK 3 16 2.2162 - 2.1691 0.99 2661 143 0.1590 0.2188 REMARK 3 17 2.1691 - 2.1257 0.99 2677 140 0.1644 0.2038 REMARK 3 18 2.1257 - 2.0856 0.99 2624 146 0.1680 0.2193 REMARK 3 19 2.0856 - 2.0483 0.99 2690 125 0.1687 0.2386 REMARK 3 20 2.0483 - 2.0136 0.99 2600 146 0.1652 0.2135 REMARK 3 21 2.0136 - 1.9811 0.99 2655 137 0.1658 0.2183 REMARK 3 22 1.9811 - 1.9507 0.98 2587 172 0.1690 0.2256 REMARK 3 23 1.9507 - 1.9220 0.98 2702 113 0.1665 0.2525 REMARK 3 24 1.9220 - 1.8949 0.98 2574 136 0.1705 0.2023 REMARK 3 25 1.8949 - 1.8693 0.98 2678 141 0.1743 0.2283 REMARK 3 26 1.8693 - 1.8450 0.98 2609 136 0.1783 0.2201 REMARK 3 27 1.8450 - 1.8220 0.98 2625 134 0.1890 0.2460 REMARK 3 28 1.8220 - 1.8000 0.98 2644 128 0.1899 0.2571 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6826 REMARK 3 ANGLE : 1.104 9362 REMARK 3 CHIRALITY : 0.044 1078 REMARK 3 PLANARITY : 0.005 1205 REMARK 3 DIHEDRAL : 13.344 2433 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CXQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-APR-14. REMARK 100 THE DEPOSITION ID IS D_1290060261. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79062 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 98.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3TFT REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, HANGING DROP PROTEIN: REMARK 280 25 MM HEPES, 50 MM NACL, 0.1 MM TCEP RESERVOIR:10% PEG 8000, REMARK 280 0.1M MAGNESIUM CHLORIDE, 0.1M HEPES CRYO: 15% PEG 400 IN REMARK 280 RESERVOIR SOLUTION, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.27650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 102.64700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.07450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 102.64700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.27650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.07450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 THR A 5 REMARK 465 GLY A 6 REMARK 465 GLY A 7 REMARK 465 ALA A 32 REMARK 465 LEU A 436 REMARK 465 PRO A 437 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 465 ALA B 4 REMARK 465 THR B 5 REMARK 465 GLY B 6 REMARK 465 GLY B 7 REMARK 465 ALA B 32 REMARK 465 VAL B 33 REMARK 465 LEU B 436 REMARK 465 PRO B 437 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 GLU B 31 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3P PLP B 501 O HOH B 2070 1.93 REMARK 500 O1P PLP A 501 O HOH A 2105 1.97 REMARK 500 O HOH A 2090 O HOH A 2091 2.13 REMARK 500 O HOH B 2062 O HOH B 2063 2.14 REMARK 500 OD2 ASP A 300 O HOH A 2121 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 34 104.60 57.83 REMARK 500 TRP A 65 32.45 76.97 REMARK 500 MET A 87 107.68 -165.00 REMARK 500 VAL A 222 -48.62 71.50 REMARK 500 LYS A 283 -91.83 41.74 REMARK 500 ALA A 307 114.37 -165.49 REMARK 500 ASN A 322 118.95 -39.04 REMARK 500 ALA A 373 46.62 -90.76 REMARK 500 ARG A 403 -127.40 45.55 REMARK 500 ARG B 30 -0.61 -141.59 REMARK 500 MET B 87 107.50 -167.67 REMARK 500 HIS B 158 14.89 -142.28 REMARK 500 VAL B 222 -49.97 69.42 REMARK 500 LYS B 283 -94.30 42.34 REMARK 500 ALA B 373 47.88 -90.88 REMARK 500 ARG B 403 -126.76 47.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2027 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH A2051 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A2053 DISTANCE = 7.19 ANGSTROMS REMARK 525 HOH A2060 DISTANCE = 6.77 ANGSTROMS REMARK 525 HOH B2076 DISTANCE = 6.85 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE KAP A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE KAP B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CXR RELATED DB: PDB REMARK 900 MYCOBATERIUM TUBERCULOSIS TRANSAMINASE BIOA COMPLEXED WITH 1-(1,3- REMARK 900 BENZOTHIAZOL-2-YL)METHANAMINE REMARK 900 RELATED ID: 4MQP RELATED DB: PDB REMARK 900 MYCOBATERIUM TUBERCULOSIS TRANSAMINASE BIOA COMPLEXED WITH 2- REMARK 900 HYDRAZINYLBENZO[D]THIAZOLE REMARK 900 RELATED ID: 4MQQ RELATED DB: PDB REMARK 900 MYCOBATERIUM TUBERCULOSIS TRANSAMINASE BIOA COMPLEXED WITH BENZO[D] REMARK 900 THIAZOLE-2-CARBOHYDRAZIDE REMARK 900 RELATED ID: 4MQR RELATED DB: PDB REMARK 900 MYCOBATERIUM TUBERCULOSIS TRANSAMINASE BIOA COMPLEXED WITH E)-5- REMARK 900 HYDROXY-4-(((Z)-ISONICOTINOYLDIAZENYL)METHYLENE)-6- METHYL-1,4- REMARK 900 DIHYDROPYRIDIN-3-YL)METHYL PHOSPHATE DBREF 4CXQ A 1 437 UNP P0A4X6 BIOA_MYCTU 1 437 DBREF 4CXQ B 1 437 UNP P0A4X6 BIOA_MYCTU 1 437 SEQADV 4CXQ MET A -19 UNP P0A4X6 EXPRESSION TAG SEQADV 4CXQ GLY A -18 UNP P0A4X6 EXPRESSION TAG SEQADV 4CXQ SER A -17 UNP P0A4X6 EXPRESSION TAG SEQADV 4CXQ SER A -16 UNP P0A4X6 EXPRESSION TAG SEQADV 4CXQ HIS A -15 UNP P0A4X6 EXPRESSION TAG SEQADV 4CXQ HIS A -14 UNP P0A4X6 EXPRESSION TAG SEQADV 4CXQ HIS A -13 UNP P0A4X6 EXPRESSION TAG SEQADV 4CXQ HIS A -12 UNP P0A4X6 EXPRESSION TAG SEQADV 4CXQ HIS A -11 UNP P0A4X6 EXPRESSION TAG SEQADV 4CXQ HIS A -10 UNP P0A4X6 EXPRESSION TAG SEQADV 4CXQ SER A -9 UNP P0A4X6 EXPRESSION TAG SEQADV 4CXQ SER A -8 UNP P0A4X6 EXPRESSION TAG SEQADV 4CXQ GLY A -7 UNP P0A4X6 EXPRESSION TAG SEQADV 4CXQ LEU A -6 UNP P0A4X6 EXPRESSION TAG SEQADV 4CXQ VAL A -5 UNP P0A4X6 EXPRESSION TAG SEQADV 4CXQ PRO A -4 UNP P0A4X6 EXPRESSION TAG SEQADV 4CXQ ARG A -3 UNP P0A4X6 EXPRESSION TAG SEQADV 4CXQ GLY A -2 UNP P0A4X6 EXPRESSION TAG SEQADV 4CXQ SER A -1 UNP P0A4X6 EXPRESSION TAG SEQADV 4CXQ HIS A 0 UNP P0A4X6 EXPRESSION TAG SEQADV 4CXQ MET B -19 UNP P0A4X6 EXPRESSION TAG SEQADV 4CXQ GLY B -18 UNP P0A4X6 EXPRESSION TAG SEQADV 4CXQ SER B -17 UNP P0A4X6 EXPRESSION TAG SEQADV 4CXQ SER B -16 UNP P0A4X6 EXPRESSION TAG SEQADV 4CXQ HIS B -15 UNP P0A4X6 EXPRESSION TAG SEQADV 4CXQ HIS B -14 UNP P0A4X6 EXPRESSION TAG SEQADV 4CXQ HIS B -13 UNP P0A4X6 EXPRESSION TAG SEQADV 4CXQ HIS B -12 UNP P0A4X6 EXPRESSION TAG SEQADV 4CXQ HIS B -11 UNP P0A4X6 EXPRESSION TAG SEQADV 4CXQ HIS B -10 UNP P0A4X6 EXPRESSION TAG SEQADV 4CXQ SER B -9 UNP P0A4X6 EXPRESSION TAG SEQADV 4CXQ SER B -8 UNP P0A4X6 EXPRESSION TAG SEQADV 4CXQ GLY B -7 UNP P0A4X6 EXPRESSION TAG SEQADV 4CXQ LEU B -6 UNP P0A4X6 EXPRESSION TAG SEQADV 4CXQ VAL B -5 UNP P0A4X6 EXPRESSION TAG SEQADV 4CXQ PRO B -4 UNP P0A4X6 EXPRESSION TAG SEQADV 4CXQ ARG B -3 UNP P0A4X6 EXPRESSION TAG SEQADV 4CXQ GLY B -2 UNP P0A4X6 EXPRESSION TAG SEQADV 4CXQ SER B -1 UNP P0A4X6 EXPRESSION TAG SEQADV 4CXQ HIS B 0 UNP P0A4X6 EXPRESSION TAG SEQRES 1 A 457 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 457 LEU VAL PRO ARG GLY SER HIS MET ALA ALA ALA THR GLY SEQRES 3 A 457 GLY LEU THR PRO GLU GLN ILE ILE ALA VAL ASP GLY ALA SEQRES 4 A 457 HIS LEU TRP HIS PRO TYR SER SER ILE GLY ARG GLU ALA SEQRES 5 A 457 VAL SER PRO VAL VAL ALA VAL ALA ALA HIS GLY ALA TRP SEQRES 6 A 457 LEU THR LEU ILE ARG ASP GLY GLN PRO ILE GLU VAL LEU SEQRES 7 A 457 ASP ALA MET SER SER TRP TRP THR ALA ILE HIS GLY HIS SEQRES 8 A 457 GLY HIS PRO ALA LEU ASP GLN ALA LEU THR THR GLN LEU SEQRES 9 A 457 ARG VAL MET ASN HIS VAL MET PHE GLY GLY LEU THR HIS SEQRES 10 A 457 GLU PRO ALA ALA ARG LEU ALA LYS LEU LEU VAL ASP ILE SEQRES 11 A 457 THR PRO ALA GLY LEU ASP THR VAL PHE PHE SER ASP SER SEQRES 12 A 457 GLY SER VAL SER VAL GLU VAL ALA ALA LYS MET ALA LEU SEQRES 13 A 457 GLN TYR TRP ARG GLY ARG GLY LEU PRO GLY LYS ARG ARG SEQRES 14 A 457 LEU MET THR TRP ARG GLY GLY TYR HIS GLY ASP THR PHE SEQRES 15 A 457 LEU ALA MET SER ILE CYS ASP PRO HIS GLY GLY MET HIS SEQRES 16 A 457 SER LEU TRP THR ASP VAL LEU ALA ALA GLN VAL PHE ALA SEQRES 17 A 457 PRO GLN VAL PRO ARG ASP TYR ASP PRO ALA TYR SER ALA SEQRES 18 A 457 ALA PHE GLU ALA GLN LEU ALA GLN HIS ALA GLY GLU LEU SEQRES 19 A 457 ALA ALA VAL VAL VAL GLU PRO VAL VAL GLN GLY ALA GLY SEQRES 20 A 457 GLY MET ARG PHE HIS ASP PRO ARG TYR LEU HIS ASP LEU SEQRES 21 A 457 ARG ASP ILE CYS ARG ARG TYR GLU VAL LEU LEU ILE PHE SEQRES 22 A 457 ASP GLU ILE ALA THR GLY PHE GLY ARG THR GLY ALA LEU SEQRES 23 A 457 PHE ALA ALA ASP HIS ALA GLY VAL SER PRO ASP ILE MET SEQRES 24 A 457 CYS VAL GLY LYS ALA LEU THR GLY GLY TYR LEU SER LEU SEQRES 25 A 457 ALA ALA THR LEU CYS THR ALA ASP VAL ALA HIS THR ILE SEQRES 26 A 457 SER ALA GLY ALA ALA GLY ALA LEU MET HIS GLY PRO THR SEQRES 27 A 457 PHE MET ALA ASN PRO LEU ALA CYS ALA VAL SER VAL ALA SEQRES 28 A 457 SER VAL GLU LEU LEU LEU GLY GLN ASP TRP ARG THR ARG SEQRES 29 A 457 ILE THR GLU LEU ALA ALA GLY LEU THR ALA GLY LEU ASP SEQRES 30 A 457 THR ALA ARG ALA LEU PRO ALA VAL THR ASP VAL ARG VAL SEQRES 31 A 457 CYS GLY ALA ILE GLY VAL ILE GLU CYS ASP ARG PRO VAL SEQRES 32 A 457 ASP LEU ALA VAL ALA THR PRO ALA ALA LEU ASP ARG GLY SEQRES 33 A 457 VAL TRP LEU ARG PRO PHE ARG ASN LEU VAL TYR ALA MET SEQRES 34 A 457 PRO PRO TYR ILE CYS THR PRO ALA GLU ILE THR GLN ILE SEQRES 35 A 457 THR SER ALA MET VAL GLU VAL ALA ARG LEU VAL GLY SER SEQRES 36 A 457 LEU PRO SEQRES 1 B 457 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 457 LEU VAL PRO ARG GLY SER HIS MET ALA ALA ALA THR GLY SEQRES 3 B 457 GLY LEU THR PRO GLU GLN ILE ILE ALA VAL ASP GLY ALA SEQRES 4 B 457 HIS LEU TRP HIS PRO TYR SER SER ILE GLY ARG GLU ALA SEQRES 5 B 457 VAL SER PRO VAL VAL ALA VAL ALA ALA HIS GLY ALA TRP SEQRES 6 B 457 LEU THR LEU ILE ARG ASP GLY GLN PRO ILE GLU VAL LEU SEQRES 7 B 457 ASP ALA MET SER SER TRP TRP THR ALA ILE HIS GLY HIS SEQRES 8 B 457 GLY HIS PRO ALA LEU ASP GLN ALA LEU THR THR GLN LEU SEQRES 9 B 457 ARG VAL MET ASN HIS VAL MET PHE GLY GLY LEU THR HIS SEQRES 10 B 457 GLU PRO ALA ALA ARG LEU ALA LYS LEU LEU VAL ASP ILE SEQRES 11 B 457 THR PRO ALA GLY LEU ASP THR VAL PHE PHE SER ASP SER SEQRES 12 B 457 GLY SER VAL SER VAL GLU VAL ALA ALA LYS MET ALA LEU SEQRES 13 B 457 GLN TYR TRP ARG GLY ARG GLY LEU PRO GLY LYS ARG ARG SEQRES 14 B 457 LEU MET THR TRP ARG GLY GLY TYR HIS GLY ASP THR PHE SEQRES 15 B 457 LEU ALA MET SER ILE CYS ASP PRO HIS GLY GLY MET HIS SEQRES 16 B 457 SER LEU TRP THR ASP VAL LEU ALA ALA GLN VAL PHE ALA SEQRES 17 B 457 PRO GLN VAL PRO ARG ASP TYR ASP PRO ALA TYR SER ALA SEQRES 18 B 457 ALA PHE GLU ALA GLN LEU ALA GLN HIS ALA GLY GLU LEU SEQRES 19 B 457 ALA ALA VAL VAL VAL GLU PRO VAL VAL GLN GLY ALA GLY SEQRES 20 B 457 GLY MET ARG PHE HIS ASP PRO ARG TYR LEU HIS ASP LEU SEQRES 21 B 457 ARG ASP ILE CYS ARG ARG TYR GLU VAL LEU LEU ILE PHE SEQRES 22 B 457 ASP GLU ILE ALA THR GLY PHE GLY ARG THR GLY ALA LEU SEQRES 23 B 457 PHE ALA ALA ASP HIS ALA GLY VAL SER PRO ASP ILE MET SEQRES 24 B 457 CYS VAL GLY LYS ALA LEU THR GLY GLY TYR LEU SER LEU SEQRES 25 B 457 ALA ALA THR LEU CYS THR ALA ASP VAL ALA HIS THR ILE SEQRES 26 B 457 SER ALA GLY ALA ALA GLY ALA LEU MET HIS GLY PRO THR SEQRES 27 B 457 PHE MET ALA ASN PRO LEU ALA CYS ALA VAL SER VAL ALA SEQRES 28 B 457 SER VAL GLU LEU LEU LEU GLY GLN ASP TRP ARG THR ARG SEQRES 29 B 457 ILE THR GLU LEU ALA ALA GLY LEU THR ALA GLY LEU ASP SEQRES 30 B 457 THR ALA ARG ALA LEU PRO ALA VAL THR ASP VAL ARG VAL SEQRES 31 B 457 CYS GLY ALA ILE GLY VAL ILE GLU CYS ASP ARG PRO VAL SEQRES 32 B 457 ASP LEU ALA VAL ALA THR PRO ALA ALA LEU ASP ARG GLY SEQRES 33 B 457 VAL TRP LEU ARG PRO PHE ARG ASN LEU VAL TYR ALA MET SEQRES 34 B 457 PRO PRO TYR ILE CYS THR PRO ALA GLU ILE THR GLN ILE SEQRES 35 B 457 THR SER ALA MET VAL GLU VAL ALA ARG LEU VAL GLY SER SEQRES 36 B 457 LEU PRO HET PLP A 501 15 HET KAP A 502 13 HET PEG A 503 7 HET EDO A 504 4 HET EDO A 505 4 HET PLP B 501 15 HET KAP B 502 13 HET PEG B 503 7 HET EDO B 504 4 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM KAP 7-KETO-8-AMINOPELARGONIC ACID HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETSYN PLP VITAMIN B6 PHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 PLP 2(C8 H10 N O6 P) FORMUL 4 KAP 2(C9 H17 N O3) FORMUL 5 PEG 2(C4 H10 O3) FORMUL 6 EDO 3(C2 H6 O2) FORMUL 12 HOH *526(H2 O) HELIX 1 1 THR A 9 LEU A 21 1 13 HELIX 2 2 MET A 61 THR A 66 1 6 HELIX 3 3 HIS A 73 MET A 87 1 15 HELIX 4 4 HIS A 97 THR A 111 1 15 HELIX 5 5 SER A 123 ARG A 142 1 20 HELIX 6 6 THR A 161 SER A 166 1 6 HELIX 7 7 HIS A 175 THR A 179 5 5 HELIX 8 8 ASP A 196 ALA A 211 1 16 HELIX 9 9 PRO A 234 GLU A 248 1 15 HELIX 10 10 PHE A 267 ALA A 272 5 6 HELIX 11 11 GLY A 282 GLY A 287 5 6 HELIX 12 12 ALA A 299 SER A 306 1 8 HELIX 13 13 ASN A 322 GLY A 338 1 17 HELIX 14 14 ASP A 340 ASP A 357 1 18 HELIX 15 15 THR A 358 LEU A 362 5 5 HELIX 16 16 ASP A 384 ARG A 395 1 12 HELIX 17 17 THR A 415 GLY A 434 1 20 HELIX 18 18 THR B 9 LEU B 21 1 13 HELIX 19 19 MET B 61 THR B 66 1 6 HELIX 20 20 HIS B 73 ARG B 85 1 13 HELIX 21 21 HIS B 97 THR B 111 1 15 HELIX 22 22 SER B 123 GLY B 141 1 19 HELIX 23 23 THR B 161 SER B 166 1 6 HELIX 24 24 HIS B 175 THR B 179 5 5 HELIX 25 25 ASP B 196 ALA B 211 1 16 HELIX 26 26 PRO B 234 GLU B 248 1 15 HELIX 27 27 PHE B 267 ALA B 272 5 6 HELIX 28 28 GLY B 282 GLY B 287 5 6 HELIX 29 29 ALA B 299 GLY B 308 1 10 HELIX 30 30 ASN B 322 GLY B 338 1 17 HELIX 31 31 ASP B 340 ASP B 357 1 18 HELIX 32 32 THR B 358 LEU B 362 5 5 HELIX 33 33 ASP B 384 ARG B 395 1 12 HELIX 34 34 THR B 415 GLY B 434 1 20 SHEET 1 AA 5 VAL A 397 TRP A 398 0 SHEET 2 AA 5 GLN A 53 ASP A 59 1 O LEU A 58 N TRP A 398 SHEET 3 AA 5 TRP A 45 ARG A 50 -1 O LEU A 46 N VAL A 57 SHEET 4 AA 5 VAL A 36 HIS A 42 -1 O VAL A 37 N ILE A 49 SHEET 5 AA 5 LEU B 95 THR B 96 1 O THR B 96 N ALA A 38 SHEET 1 AB 5 LEU A 95 THR A 96 0 SHEET 2 AB 5 VAL B 36 HIS B 42 1 O VAL B 36 N THR A 96 SHEET 3 AB 5 TRP B 45 ARG B 50 -1 O TRP B 45 N HIS B 42 SHEET 4 AB 5 GLN B 53 ASP B 59 -1 O GLN B 53 N ARG B 50 SHEET 5 AB 5 VAL B 397 TRP B 398 1 N TRP B 398 O LEU B 58 SHEET 1 AC 7 LEU A 115 SER A 121 0 SHEET 2 AC 7 ALA A 293 THR A 298 -1 O ALA A 293 N SER A 121 SHEET 3 AC 7 ILE A 278 VAL A 281 -1 O MET A 279 N LEU A 296 SHEET 4 AC 7 LEU A 250 ASP A 254 1 O PHE A 253 N CYS A 280 SHEET 5 AC 7 LEU A 214 VAL A 219 1 O ALA A 215 N LEU A 250 SHEET 6 AC 7 ARG A 149 TRP A 153 1 O ARG A 149 N ALA A 215 SHEET 7 AC 7 VAL A 186 ALA A 188 1 O VAL A 186 N THR A 152 SHEET 1 AD 2 VAL A 223 GLN A 224 0 SHEET 2 AD 2 ARG A 230 PHE A 231 -1 O ARG A 230 N GLN A 224 SHEET 1 AE 3 VAL A 365 VAL A 370 0 SHEET 2 AE 3 GLY A 375 CYS A 379 -1 O VAL A 376 N ARG A 369 SHEET 3 AE 3 LEU A 405 ALA A 408 -1 O VAL A 406 N ILE A 377 SHEET 1 BA 7 LEU B 115 SER B 121 0 SHEET 2 BA 7 ALA B 293 THR B 298 -1 O ALA B 293 N SER B 121 SHEET 3 BA 7 ILE B 278 VAL B 281 -1 O MET B 279 N LEU B 296 SHEET 4 BA 7 LEU B 250 ASP B 254 1 O PHE B 253 N CYS B 280 SHEET 5 BA 7 LEU B 214 VAL B 219 1 O ALA B 215 N LEU B 250 SHEET 6 BA 7 ARG B 149 TRP B 153 1 O ARG B 149 N ALA B 215 SHEET 7 BA 7 VAL B 186 ALA B 188 1 O VAL B 186 N THR B 152 SHEET 1 BB 2 VAL B 223 GLN B 224 0 SHEET 2 BB 2 ARG B 230 PHE B 231 -1 O ARG B 230 N GLN B 224 SHEET 1 BC 3 VAL B 365 VAL B 370 0 SHEET 2 BC 3 GLY B 375 CYS B 379 -1 O VAL B 376 N ARG B 369 SHEET 3 BC 3 LEU B 405 ALA B 408 -1 O VAL B 406 N ILE B 377 LINK NZ LYS A 283 C4A PLP A 501 1555 1555 1.37 LINK NZ LYS B 283 C4A PLP B 501 1555 1555 1.39 SITE 1 AC1 19 TRP A 65 GLY A 124 SER A 125 TYR A 157 SITE 2 AC1 19 HIS A 158 GLY A 159 GLU A 220 ASP A 254 SITE 3 AC1 19 ILE A 256 ALA A 257 LYS A 283 KAP A 502 SITE 4 AC1 19 HOH A2104 HOH A2105 HOH A2107 HOH A2196 SITE 5 AC1 19 GLY B 316 PRO B 317 THR B 318 SITE 1 AC2 12 TYR A 25 TRP A 64 TYR A 157 ALA A 226 SITE 2 AC2 12 LYS A 283 ARG A 400 PLP A 501 HOH A2032 SITE 3 AC2 12 HOH A2291 HOH A2305 GLY B 316 THR B 318 SITE 1 AC3 4 ARG A 193 HIS A 232 PRO A 234 HOH A2306 SITE 1 AC4 3 VAL A 181 HOH A2307 HOH A2308 SITE 1 AC5 4 SER A 34 PRO A 35 VAL A 36 HOH A2016 SITE 1 AC6 18 PRO A 317 THR A 318 HOH A2103 HOH A2232 SITE 2 AC6 18 TRP B 65 GLY B 124 SER B 125 TYR B 157 SITE 3 AC6 18 HIS B 158 GLY B 159 GLU B 220 ASP B 254 SITE 4 AC6 18 ILE B 256 ALA B 257 LYS B 283 KAP B 502 SITE 5 AC6 18 HOH B2070 HOH B2138 SITE 1 AC7 10 GLY A 316 THR A 318 TYR B 25 TRP B 64 SITE 2 AC7 10 TYR B 157 ALA B 226 LYS B 283 ARG B 400 SITE 3 AC7 10 PLP B 501 HOH B2028 SITE 1 AC8 4 VAL B 222 HIS B 232 HOH B2216 HOH B2217 SITE 1 AC9 4 HOH A2137 HOH A2308 VAL B 181 HOH B2218 CRYST1 62.553 66.149 205.294 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015986 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015117 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004871 0.00000