HEADER TRANSCRIPTION 10-APR-14 4CYC TITLE CRYSTAL STRUCTURE OF A UBX-EXD-DNA COMPLEX INCLUDING THE HEXAPEPTIDE TITLE 2 AND UBDA MOTIFS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOMEOTIC PROTEIN ULTRABITHORAX; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HOMEODOMAIN WITH HX AND UBDA, RESIDUES 233-367; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HOMEOBOX PROTEIN EXTRADENTICLE; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: HOMEODOMAIN RESIDUES 238-312; COMPND 10 SYNONYM: DPBX, HOMEOTIC PROTEIN EXTRADENTICLE; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 5'-D(*GP*TP*CP*GP*CP*CP*AP*TP*AP*AP*AP*TP*CP*AP*CP)-3'; COMPND 14 CHAIN: C; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: 5'-D(*AP*CP*GP*TP*GP*AP*TP*TP*TP*AP*TP*GP*GP*CP*GP)-3'; COMPND 18 CHAIN: D; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: UBXIVA PDEST14; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 13 ORGANISM_COMMON: FRUIT FLY; SOURCE 14 ORGANISM_TAXID: 7227; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_VARIANT: ROSETTA PLYSS; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: EXD2 PETG20A; SOURCE 20 MOL_ID: 3; SOURCE 21 SYNTHETIC: YES; SOURCE 22 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 23 ORGANISM_COMMON: FRUIT FLY; SOURCE 24 ORGANISM_TAXID: 7227; SOURCE 25 MOL_ID: 4; SOURCE 26 SYNTHETIC: YES; SOURCE 27 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 28 ORGANISM_COMMON: FRUIT FLY; SOURCE 29 ORGANISM_TAXID: 7227 KEYWDS TRANSCRIPTION, HOX, PBC, DNA PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.FOOS,M.J.MATE,M.ORTIZ-LOMBARDIA REVDAT 2 20-DEC-23 4CYC 1 REMARK REVDAT 1 18-FEB-15 4CYC 0 JRNL AUTH N.FOOS,C.MAUREL-ZAFFRAN,M.J.MATE,R.VINCENTELLI,M.HAINAUT, JRNL AUTH 2 H.BERENGER,J.PRADEL,A.J.SAURIN,M.ORTIZ-LOMBARDIA,Y.GRABA JRNL TITL A FLEXIBLE EXTENSION OF THE DROSOPHILA ULTRABITHORAX JRNL TITL 2 HOMEODOMAIN DEFINES A NOVEL HOX/PBC INTERACTION MODE. JRNL REF STRUCTURE V. 23 270 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 25651060 JRNL DOI 10.1016/J.STR.2014.12.011 REMARK 2 REMARK 2 RESOLUTION. 2.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.5 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 17038 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 863 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 9 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.36 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.50 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2720 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2487 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2579 REMARK 3 BIN R VALUE (WORKING SET) : 0.2472 REMARK 3 BIN FREE R VALUE : 0.2745 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.18 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 141 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1079 REMARK 3 NUCLEIC ACID ATOMS : 609 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 68 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 83.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 87.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.83220 REMARK 3 B22 (A**2) : -3.83220 REMARK 3 B33 (A**2) : 7.66430 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.828 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.218 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.174 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.210 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.171 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1807 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 2556 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 572 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 28 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 190 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1807 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 230 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 2 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1909 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 0.88 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.02 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 21.77 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -41.3016 15.9532 8.9342 REMARK 3 T TENSOR REMARK 3 T11: 0.1030 T22: -0.4696 REMARK 3 T33: -0.1948 T12: -0.1121 REMARK 3 T13: -0.1088 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 4.6769 L22: 5.6381 REMARK 3 L33: 11.0884 L12: -0.6148 REMARK 3 L13: -1.6676 L23: -1.3876 REMARK 3 S TENSOR REMARK 3 S11: -0.1314 S12: -0.0629 S13: 0.7313 REMARK 3 S21: 0.7699 S22: 0.3419 S23: -0.2977 REMARK 3 S31: -1.4859 S32: 0.3990 S33: -0.2105 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -46.6448 5.8180 -16.1441 REMARK 3 T TENSOR REMARK 3 T11: 0.2836 T22: -0.2435 REMARK 3 T33: -0.1770 T12: -0.1484 REMARK 3 T13: -0.0454 T23: 0.0368 REMARK 3 L TENSOR REMARK 3 L11: 3.8978 L22: 3.0977 REMARK 3 L33: 16.4234 L12: -1.0262 REMARK 3 L13: 0.8795 L23: 0.2988 REMARK 3 S TENSOR REMARK 3 S11: 0.1224 S12: 0.4397 S13: -0.0097 REMARK 3 S21: -0.4562 S22: -0.1423 S23: 0.0803 REMARK 3 S31: -0.6765 S32: 0.0587 S33: 0.0199 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): -39.2996 13.2077 0.0095 REMARK 3 T TENSOR REMARK 3 T11: 0.0777 T22: -0.2972 REMARK 3 T33: -0.0396 T12: -0.2833 REMARK 3 T13: -0.1139 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 4.0814 L22: 13.6297 REMARK 3 L33: 14.6098 L12: 3.3726 REMARK 3 L13: -1.6477 L23: -4.8019 REMARK 3 S TENSOR REMARK 3 S11: -0.4335 S12: 0.0603 S13: 0.4909 REMARK 3 S21: -0.5141 S22: 0.1258 S23: -0.5250 REMARK 3 S31: -1.1238 S32: 0.5396 S33: 0.3077 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): -41.9668 7.5963 -2.0011 REMARK 3 T TENSOR REMARK 3 T11: 0.2032 T22: -0.2509 REMARK 3 T33: 0.0554 T12: -0.2147 REMARK 3 T13: -0.0137 T23: 0.0246 REMARK 3 L TENSOR REMARK 3 L11: -0.0594 L22: 4.4397 REMARK 3 L33: 12.8131 L12: -1.2302 REMARK 3 L13: -0.4757 L23: -3.3009 REMARK 3 S TENSOR REMARK 3 S11: 0.0611 S12: -0.0513 S13: -0.0593 REMARK 3 S21: -0.3246 S22: -0.2167 S23: -0.4859 REMARK 3 S31: -0.3239 S32: 0.2974 S33: 0.1556 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CYC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-APR-14. REMARK 100 THE DEPOSITION ID IS D_1290060299. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.38530 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : TRUNCATE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17094 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.360 REMARK 200 RESOLUTION RANGE LOW (A) : 84.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 41.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.80 REMARK 200 R MERGE FOR SHELL (I) : 0.97000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4BZL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M AMMONIUM PHOSPHATE, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.15667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.57833 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 24.57833 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 49.15667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLN A -18 REMARK 465 ALA A -17 REMARK 465 SER A -16 REMARK 465 ASN A -15 REMARK 465 HIS A -14 REMARK 465 THR A -13 REMARK 465 ILE A -6 REMARK 465 ALA A -5 REMARK 465 GLY A -4 REMARK 465 THR A -3 REMARK 465 ASN A -2 REMARK 465 GLY A -1 REMARK 465 LEU A 0 REMARK 465 ARG A 1 REMARK 465 ARG A 2 REMARK 465 ARG A 3 REMARK 465 GLY A 4 REMARK 465 GLU A 65 REMARK 465 LEU A 66 REMARK 465 ASN A 67 REMARK 465 GLU A 68 REMARK 465 GLN A 69 REMARK 465 GLU A 70 REMARK 465 LYS A 71 REMARK 465 GLN A 72 REMARK 465 ALA A 73 REMARK 465 GLY B -3 REMARK 465 ALA B -2 REMARK 465 ARG B -1 REMARK 465 ARG B 0 REMARK 465 LYS B 1 REMARK 465 ARG B 2 REMARK 465 GLY B 61 REMARK 465 LYS B 62 REMARK 465 ALA B 63 REMARK 465 GLN B 64 REMARK 465 GLU B 65 REMARK 465 GLU B 66 REMARK 465 ALA B 67 REMARK 465 ASN B 68 REMARK 465 LEU B 69 REMARK 465 TYR B 70 REMARK 465 ALA B 71 REMARK 465 ALA B 72 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG C 1 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT C 8 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DG D 20 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 59 46.55 -81.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DT D 23 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 FIRST METHIONINE FROM EXPRESSION VECTOR REMARK 999 FIRST GLYCINE FROM EXPRESSION VECTOR DBREF 4CYC A -18 73 UNP P83949 UBX_DROME 233 324 DBREF 4CYC B -2 72 UNP P40427 EXD_DROME 238 312 DBREF 4CYC C 1 15 PDB 4CYC 4CYC 1 15 DBREF 4CYC D 16 30 PDB 4CYC 4CYC 16 30 SEQADV 4CYC MET A -19 UNP P83949 EXPRESSION TAG SEQADV 4CYC GLY B -3 UNP P40427 EXPRESSION TAG SEQRES 1 A 93 MET GLN ALA SER ASN HIS THR PHE TYR PRO TRP MET ALA SEQRES 2 A 93 ILE ALA GLY THR ASN GLY LEU ARG ARG ARG GLY ARG GLN SEQRES 3 A 93 THR TYR THR ARG TYR GLN THR LEU GLU LEU GLU LYS GLU SEQRES 4 A 93 PHE HIS THR ASN HIS TYR LEU THR ARG ARG ARG ARG ILE SEQRES 5 A 93 GLU MET ALA HIS ALA LEU CYS LEU THR GLU ARG GLN ILE SEQRES 6 A 93 LYS ILE TRP PHE GLN ASN ARG ARG MET LYS LEU LYS LYS SEQRES 7 A 93 GLU ILE GLN ALA ILE LYS GLU LEU ASN GLU GLN GLU LYS SEQRES 8 A 93 GLN ALA SEQRES 1 B 76 GLY ALA ARG ARG LYS ARG ARG ASN PHE SER LYS GLN ALA SEQRES 2 B 76 SER GLU ILE LEU ASN GLU TYR PHE TYR SER HIS LEU SER SEQRES 3 B 76 ASN PRO TYR PRO SER GLU GLU ALA LYS GLU GLU LEU ALA SEQRES 4 B 76 ARG LYS CYS GLY ILE THR VAL SER GLN VAL SER ASN TRP SEQRES 5 B 76 PHE GLY ASN LYS ARG ILE ARG TYR LYS LYS ASN ILE GLY SEQRES 6 B 76 LYS ALA GLN GLU GLU ALA ASN LEU TYR ALA ALA SEQRES 1 C 15 DG DT DC DG DC DC DA DT DA DA DA DT DC SEQRES 2 C 15 DA DC SEQRES 1 D 15 DA DC DG DT DG DA DT DT DT DA DT DG DG SEQRES 2 D 15 DC DG FORMUL 5 HOH *68(H2 O) HELIX 1 1 TYR A -11 ALA A -7 5 5 HELIX 2 2 THR A 9 ASN A 23 1 15 HELIX 3 3 THR A 27 CYS A 39 1 13 HELIX 4 4 THR A 41 ALA A 62 1 22 HELIX 5 5 SER B 6 HIS B 20 1 15 HELIX 6 6 SER B 27 GLY B 39 1 13 HELIX 7 7 THR B 41 ASN B 59 1 19 CRYST1 97.707 97.707 73.735 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010235 0.005909 0.000000 0.00000 SCALE2 0.000000 0.011818 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013562 0.00000