HEADER OXIDOREDUCTASE 21-APR-14 4CZO TITLE CRYSTAL STRUCTURE OF THE EXTRALONG FUNGAL MANGANESE PEROXIDASE FROM TITLE 2 CERIPORIOPSIS SUBVERMISPORA IN COMPLEX WITH MANGANESE COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXTRALONG MANGANESE PEROXIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.11.1.13; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CERIPORIOPSIS SUBVERMISPORA; SOURCE 3 ORGANISM_TAXID: 42742; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 316407; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: K-12 SUBSTR. W3110; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PFLAG1-CSMNP6 KEYWDS CLASS II (FUNGAL) PEROXIDASES, PROTOPORPHYRIN IX, ELECTRON TRANSFER, KEYWDS 2 LIGNIN PEROXIDASE, LIGNIN DEGRADATION, MANGANESE PEROXIDASE, MNII KEYWDS 3 OXIDATION, PEROXIDASE, OXIDOREDUCTASE, HYDROGEN PEROXIDE, IRON, KEYWDS 4 MANGANESE, METAL-BINDING, SECRETED EXPDTA X-RAY DIFFRACTION AUTHOR F.J.MEDRANO,A.ROMERO REVDAT 3 20-DEC-23 4CZO 1 REMARK LINK REVDAT 2 17-DEC-14 4CZO 1 JRNL REVDAT 1 10-DEC-14 4CZO 0 JRNL AUTH E.FERNANDEZ-FUEYO,S.ACEBES,F.J.RUIZ-DUENAS,M.J.MARTINEZ, JRNL AUTH 2 A.ROMERO,F.J.MEDRANO,V.GUALLAR,A.T.MARTINEZ JRNL TITL STRUCTURAL IMPLICATIONS OF THE C-TERMINAL TAIL IN THE JRNL TITL 2 CATALYTIC AND STABILITY PROPERTIES OF MANGANESE PEROXIDASES JRNL TITL 3 FROM LIGNINOLYTIC FUNGI JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 3253 2014 JRNL REFN ISSN 0907-4449 JRNL PMID 25478843 JRNL DOI 10.1107/S1399004714022755 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 126815 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.140 REMARK 3 R VALUE (WORKING SET) : 0.139 REMARK 3 FREE R VALUE : 0.154 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6344 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.4745 - 3.7240 1.00 4363 229 0.1572 0.1645 REMARK 3 2 3.7240 - 2.9564 1.00 4160 220 0.1533 0.1555 REMARK 3 3 2.9564 - 2.5828 1.00 4120 217 0.1436 0.1517 REMARK 3 4 2.5828 - 2.3468 1.00 4112 217 0.1319 0.1338 REMARK 3 5 2.3468 - 2.1786 1.00 4072 214 0.1181 0.1335 REMARK 3 6 2.1786 - 2.0502 1.00 4057 213 0.1197 0.1280 REMARK 3 7 2.0502 - 1.9475 1.00 4058 213 0.1197 0.1368 REMARK 3 8 1.9475 - 1.8627 1.00 4044 214 0.1177 0.1479 REMARK 3 9 1.8627 - 1.7910 1.00 4049 213 0.1170 0.1384 REMARK 3 10 1.7910 - 1.7292 1.00 4025 211 0.1126 0.1298 REMARK 3 11 1.7292 - 1.6752 1.00 4027 212 0.1067 0.1399 REMARK 3 12 1.6752 - 1.6273 1.00 4007 212 0.1032 0.1236 REMARK 3 13 1.6273 - 1.5844 1.00 4011 211 0.1013 0.1267 REMARK 3 14 1.5844 - 1.5458 1.00 4014 210 0.1033 0.1246 REMARK 3 15 1.5458 - 1.5106 1.00 4033 212 0.1038 0.1413 REMARK 3 16 1.5106 - 1.4785 1.00 4021 211 0.1097 0.1323 REMARK 3 17 1.4785 - 1.4489 1.00 3978 210 0.1180 0.1598 REMARK 3 18 1.4489 - 1.4216 1.00 4010 211 0.1269 0.1628 REMARK 3 19 1.4216 - 1.3962 1.00 4014 210 0.1343 0.1570 REMARK 3 20 1.3962 - 1.3725 1.00 3972 210 0.1409 0.1819 REMARK 3 21 1.3725 - 1.3504 1.00 4012 211 0.1504 0.1734 REMARK 3 22 1.3504 - 1.3296 1.00 4023 212 0.1632 0.1965 REMARK 3 23 1.3296 - 1.3100 1.00 3946 207 0.1705 0.1927 REMARK 3 24 1.3100 - 1.2916 1.00 3966 209 0.1710 0.1985 REMARK 3 25 1.2916 - 1.2741 0.99 3962 210 0.1915 0.1986 REMARK 3 26 1.2741 - 1.2576 0.99 3914 207 0.2066 0.2263 REMARK 3 27 1.2576 - 1.2419 0.98 3921 207 0.2273 0.2579 REMARK 3 28 1.2419 - 1.2269 0.98 3902 206 0.2473 0.2820 REMARK 3 29 1.2269 - 1.2126 0.98 3919 207 0.2742 0.2710 REMARK 3 30 1.2126 - 1.1990 0.95 3759 198 0.3082 0.3116 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2832 REMARK 3 ANGLE : 1.318 3877 REMARK 3 CHIRALITY : 0.075 440 REMARK 3 PLANARITY : 0.007 518 REMARK 3 DIHEDRAL : 12.280 996 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CZO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-APR-14. REMARK 100 THE DEPOSITION ID IS D_1290060412. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980110 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 127081 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 1.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 1.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3MQ5 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 4000, 100MM NA-ACETATE PH 4.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.26500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 54.22500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 54.22500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.39750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 54.22500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 54.22500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 17.13250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 54.22500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.22500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.39750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 54.22500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.22500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 17.13250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 34.26500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -3 REMARK 465 ALA A -2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 8 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2331 O HOH A 2332 2.07 REMARK 500 O HOH A 2071 O HOH A 2300 2.15 REMARK 500 O HOH A 2022 O HOH A 2125 2.17 REMARK 500 O HOH A 2445 O HOH A 2447 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 28 -59.73 -132.11 REMARK 500 VAL A 73 -83.68 -110.22 REMARK 500 THR A 133 -168.90 -161.76 REMARK 500 THR A 313 -0.54 80.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2003 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A2029 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A2043 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A2044 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH A2064 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A2090 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A2148 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A2168 DISTANCE = 5.83 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1372 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 35 OE2 REMARK 620 2 GLU A 39 OE2 92.2 REMARK 620 3 ASP A 179 OD2 93.8 90.1 REMARK 620 4 HEM A1374 O1D 93.5 90.8 172.5 REMARK 620 5 HOH A2070 O 86.9 175.2 85.3 94.0 REMARK 620 6 HOH A2078 O 176.9 90.7 87.3 85.2 90.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1371 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 47 OD1 REMARK 620 2 ASP A 47 O 82.0 REMARK 620 3 GLY A 62 O 96.2 68.6 REMARK 620 4 ASP A 64 OD1 84.6 134.8 70.3 REMARK 620 5 SER A 66 OG 89.6 146.6 144.8 75.8 REMARK 620 6 HOH A2091 O 91.6 73.0 139.2 150.5 74.9 REMARK 620 7 HOH A2100 O 173.0 102.4 90.5 95.8 83.7 84.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1373 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 85 OD2 REMARK 620 2 HOH A2079 O 76.9 REMARK 620 3 HOH A2157 O 97.8 91.7 REMARK 620 4 HOH A2160 O 77.6 147.1 112.0 REMARK 620 5 HOH A2161 O 94.7 69.8 154.7 92.1 REMARK 620 6 HOH A2488 O 172.1 111.0 82.5 94.9 88.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A1374 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 173 NE2 REMARK 620 2 HEM A1374 NA 98.0 REMARK 620 3 HEM A1374 NB 97.0 88.3 REMARK 620 4 HEM A1374 NC 101.9 160.1 89.7 REMARK 620 5 HEM A1374 ND 103.1 87.3 159.9 87.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1370 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 174 O REMARK 620 2 THR A 174 OG1 73.2 REMARK 620 3 ASP A 191 OD1 78.0 118.4 REMARK 620 4 ASP A 191 OD2 91.8 77.5 50.2 REMARK 620 5 THR A 193 OG1 146.6 139.7 78.8 91.4 REMARK 620 6 THR A 193 O 81.0 146.4 75.4 125.2 70.1 REMARK 620 7 THR A 196 O 85.8 79.9 149.7 157.0 103.2 77.0 REMARK 620 8 ASP A 198 OD1 140.9 68.8 128.4 88.4 72.4 129.1 79.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1370 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1371 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 1372 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 1373 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 1374 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CZN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE EXTRALONG FUNGAL MANGANESE PEROXIDASE FROM REMARK 900 CERIPORIOPSIS SUBVERMISPORA REMARK 900 RELATED ID: 4CZP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE EXTRALONG FUNGAL MANGANESE PEROXIDASE FROM REMARK 900 CERIPORIOPSIS SUBVERMISPORA IN COMPLEX WITH MANGANESE (ANOMALOUS REMARK 900 DATA) REMARK 900 RELATED ID: 4CZQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE EXTRALONG FUNGAL MANGANESE PEROXIDASE FROM REMARK 900 CERIPORIOPSIS SUBVERMISPORA IN COMPLEX WITH CADMIUM REMARK 900 RELATED ID: 4CZR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE EXTRALONG FUNGAL MANGANESE PEROXIDASE FROM REMARK 900 CERIPORIOPSIS SUBVERMISPORA IN COMPLEX WITH CADMIUM (ANOMALOUS DATA) DBREF 4CZO A -3 365 PDB 4CZO 4CZO -3 365 SEQRES 1 A 369 MET ALA PRO THR ALA VAL CYS SER ASP GLY THR ARG VAL SEQRES 2 A 369 SER ASN ALA VAL CYS CYS ASP PHE VAL SER LEU GLY GLN SEQRES 3 A 369 ASP LEU GLN SER MET VAL LEU GLN GLY ASP CYS GLY GLU SEQRES 4 A 369 ASP ALA HIS GLU ILE ILE ARG LEU THR PHE HIS ASP ALA SEQRES 5 A 369 VAL ALA ILE SER ARG LYS LEU GLY PRO SER ALA GLY GLY SEQRES 6 A 369 GLY ALA ASP GLY SER MET LEU LEU PHE PRO LEU VAL GLU SEQRES 7 A 369 PRO GLU PHE ALA ALA SER ASN GLY ILE ASP ASP SER VAL SEQRES 8 A 369 ASN ASN LEU ILE PRO PHE LEU SER LEU HIS PRO THR ILE SEQRES 9 A 369 SER ALA GLY ASP LEU VAL GLN PHE ALA GLY ALA VAL ALA SEQRES 10 A 369 LEU SER ASN CYS PRO GLY ALA PRO ARG VAL GLN PHE LEU SEQRES 11 A 369 ALA GLY ARG PRO ASN HIS THR ILE ALA ALA ILE ASP GLY SEQRES 12 A 369 LEU ILE PRO GLU PRO GLN ASP ASN VAL THR SER ILE LEU SEQRES 13 A 369 GLU ARG PHE ASP ASP ALA GLY GLY PHE THR PRO PHE GLU SEQRES 14 A 369 VAL VAL SER LEU LEU ALA SER HIS THR ILE ALA ARG ALA SEQRES 15 A 369 ASP LYS VAL ASP PRO THR LEU ASP ALA ALA PRO PHE ASP SEQRES 16 A 369 THR THR PRO PHE THR PHE ASP SER GLN ILE PHE LEU GLU SEQRES 17 A 369 VAL LEU LEU LYS GLY VAL GLY PHE PRO GLY LEU ASP ASN SEQRES 18 A 369 ASN THR GLY GLU VAL SER SER PRO LEU PRO LEU GLY ASP SEQRES 19 A 369 THR SER THR GLY GLY LYS ASP THR GLY LEU MET ARG LEU SEQRES 20 A 369 GLN SER ASP PHE ALA LEU ALA HIS ASP PRO ARG THR ALA SEQRES 21 A 369 CYS PHE TRP GLN GLY PHE VAL ASP GLN GLN GLU PHE MET SEQRES 22 A 369 SER GLN SER PHE ALA SER ALA PHE ALA LYS LEU ALA VAL SEQRES 23 A 369 LEU GLY HIS ASN THR ASP ASP LEU ILE ASP CYS SER GLU SEQRES 24 A 369 VAL VAL PRO VAL PRO LYS PRO ALA VAL ASP LYS PRO THR SEQRES 25 A 369 THR PHE PRO ALA THR THR GLY PRO GLN ASP LEU GLU LEU SEQRES 26 A 369 SER CYS LEU ALA GLU ARG PHE PRO THR LEU SER VAL ASP SEQRES 27 A 369 PRO GLY ALA GLN GLU THR LEU ILE PRO HIS CYS SER ASP SEQRES 28 A 369 GLY LEU GLU ASN CYS THR SER VAL GLN PHE SER GLY PRO SEQRES 29 A 369 ALA THR ASP SER PRO HET CA A1370 1 HET CA A1371 1 HET MN A1372 1 HET MN A1373 1 HET HEM A1374 73 HETNAM CA CALCIUM ION HETNAM MN MANGANESE (II) ION HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 2 CA 2(CA 2+) FORMUL 4 MN 2(MN 2+) FORMUL 6 HEM C34 H32 FE N4 O4 FORMUL 7 HOH *490(H2 O) HELIX 1 1 ASN A 11 CYS A 14 5 4 HELIX 2 2 CYS A 15 VAL A 28 1 14 HELIX 3 3 GLY A 34 VAL A 49 1 16 HELIX 4 4 GLY A 56 GLY A 60 5 5 HELIX 5 5 GLY A 65 PHE A 70 1 6 HELIX 6 6 VAL A 73 PHE A 77 5 5 HELIX 7 7 PHE A 77 ASN A 81 5 5 HELIX 8 8 ILE A 83 HIS A 97 1 15 HELIX 9 9 SER A 101 ASN A 116 1 16 HELIX 10 10 ASN A 147 GLY A 160 1 14 HELIX 11 11 THR A 162 LEU A 170 1 9 HELIX 12 12 ALA A 171 ILE A 175 5 5 HELIX 13 13 SER A 199 LEU A 206 1 8 HELIX 14 14 ASP A 230 GLY A 234 5 5 HELIX 15 15 GLN A 244 ASP A 252 1 9 HELIX 16 16 THR A 255 PHE A 262 1 8 HELIX 17 17 GLN A 265 VAL A 282 1 18 HELIX 18 18 ASN A 286 LEU A 290 5 5 HELIX 19 19 SER A 294 VAL A 297 5 4 HELIX 20 20 GLY A 315 ASP A 318 5 4 SHEET 1 AA 2 ALA A 1 VAL A 2 0 SHEET 2 AA 2 ARG A 8 VAL A 9 -1 O VAL A 9 N ALA A 1 SHEET 1 AB 2 LEU A 126 ALA A 127 0 SHEET 2 AB 2 ILE A 291 ASP A 292 -1 O ILE A 291 N ALA A 127 SHEET 1 AC 2 ARG A 177 ALA A 178 0 SHEET 2 AC 2 ALA A 188 PRO A 189 -1 O ALA A 188 N ALA A 178 SHEET 1 AD 2 GLU A 221 VAL A 222 0 SHEET 2 AD 2 ARG A 242 LEU A 243 -1 O ARG A 242 N VAL A 222 SSBOND 1 CYS A 3 CYS A 15 1555 1555 2.05 SSBOND 2 CYS A 14 CYS A 293 1555 1555 2.05 SSBOND 3 CYS A 33 CYS A 117 1555 1555 2.08 SSBOND 4 CYS A 257 CYS A 323 1555 1555 2.15 SSBOND 5 CYS A 345 CYS A 352 1555 1555 2.06 LINK OE2 GLU A 35 MN MN A1372 1555 1555 2.20 LINK OE2 GLU A 39 MN MN A1372 1555 1555 2.14 LINK OD1 ASP A 47 CA CA A1371 1555 1555 2.31 LINK O ASP A 47 CA CA A1371 1555 1555 2.43 LINK O GLY A 62 CA CA A1371 1555 1555 2.45 LINK OD1 ASP A 64 CA CA A1371 1555 1555 2.42 LINK OG SER A 66 CA CA A1371 1555 1555 2.50 LINK OD2 ASP A 85 MN MN A1373 1555 1555 2.17 LINK NE2 HIS A 173 FE HEM A1374 1555 1555 2.16 LINK O THR A 174 CA CA A1370 1555 1555 2.35 LINK OG1 THR A 174 CA CA A1370 1555 1555 2.46 LINK OD2 ASP A 179 MN MN A1372 1555 1555 2.20 LINK OD1 ASP A 191 CA CA A1370 1555 1555 2.69 LINK OD2 ASP A 191 CA CA A1370 1555 1555 2.46 LINK OG1 THR A 193 CA CA A1370 1555 1555 2.49 LINK O THR A 193 CA CA A1370 1555 1555 2.36 LINK O THR A 196 CA CA A1370 1555 1555 2.54 LINK OD1 ASP A 198 CA CA A1370 1555 1555 2.47 LINK CA CA A1371 O HOH A2091 1555 1555 2.41 LINK CA CA A1371 O HOH A2100 1555 1555 2.32 LINK MN MN A1372 O1D HEM A1374 1555 1555 2.14 LINK MN MN A1372 O HOH A2070 1555 1555 2.26 LINK MN MN A1372 O HOH A2078 1555 1555 2.20 LINK MN MN A1373 O HOH A2079 1555 1555 2.72 LINK MN MN A1373 O HOH A2157 1555 1555 2.46 LINK MN MN A1373 O HOH A2160 1555 1555 2.12 LINK MN MN A1373 O HOH A2161 1555 1555 1.97 LINK MN MN A1373 O HOH A2488 1555 1555 2.32 SITE 1 AC1 5 THR A 174 ASP A 191 THR A 193 THR A 196 SITE 2 AC1 5 ASP A 198 SITE 1 AC2 6 ASP A 47 GLY A 62 ASP A 64 SER A 66 SITE 2 AC2 6 HOH A2091 HOH A2100 SITE 1 AC3 6 GLU A 35 GLU A 39 ASP A 179 HEM A1374 SITE 2 AC3 6 HOH A2070 HOH A2078 SITE 1 AC4 6 ASP A 85 HOH A2079 HOH A2157 HOH A2160 SITE 2 AC4 6 HOH A2161 HOH A2488 SITE 1 AC5 22 GLU A 35 HIS A 38 GLU A 39 ARG A 42 SITE 2 AC5 22 PHE A 45 GLU A 143 PRO A 144 SER A 172 SITE 3 AC5 22 HIS A 173 ALA A 176 ARG A 177 ALA A 178 SITE 4 AC5 22 ASP A 179 LYS A 180 VAL A 181 SER A 245 SITE 5 AC5 22 MN A1372 HOH A2069 HOH A2078 HOH A2080 SITE 6 AC5 22 HOH A2092 HOH A2489 CRYST1 108.450 108.450 68.530 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009221 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009221 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014592 0.00000