HEADER TRANSPORT PROTEIN 25-APR-14 4D0A TITLE 3D EM MAP OF THE SODIUM PROTON ANTIPORTER MJNHAP1 FROM TITLE 2 METHANOCALDOCOCCUS JANNASCHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: NA(+)/H(+) ANTIPORTER 1; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: MJNHAP1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII DSM 2661; SOURCE 3 ORGANISM_TAXID: 243232; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET26B KEYWDS TRANSPORT PROTEIN, MEMBRANE PROTEIN, ANTIPORTER, TRANSPORTER, KEYWDS 2 EXCHANGER, CPA EXPDTA ELECTRON CRYSTALLOGRAPHY AUTHOR C.PAULINO,D.WOEHLERT,O.YILDIZ,W.KUHLBRANDT REVDAT 2 20-DEC-23 4D0A 1 REMARK REVDAT 1 10-DEC-14 4D0A 0 JRNL AUTH C.PAULINO,D.WOEHLERT,O.YILDIZ,W.KUHLBRANDT JRNL TITL 3D EM MAP OF THE SODIUM PROTON ANTIPORTER MJNHAP1 FROM JRNL TITL 2 METHANOCALDOCOCCUS JANNASCHII JRNL REF ELIFE V. 3 2014 JRNL REFN ESSN 2050-084X JRNL PMID 25426803 JRNL DOI 10.7554/ELIFE.03583 REMARK 2 REMARK 2 RESOLUTION. 6.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : 2DX REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 6.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3175 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4D0A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE. REMARK 100 THE DEPOSITION ID IS D_1290060466. REMARK 240 REMARK 240 EXPERIMENTAL DETAILS REMARK 240 RECONSTRUCTION METHOD : CRYSTALLOGRAPHY REMARK 240 SAMPLE TYPE : 2D ARRAY REMARK 240 SPECIMEN TYPE : VITREOUS ICE REMARK 240 DATA ACQUISITION REMARK 240 DATE OF DATA COLLECTION : 01-DEC-12 REMARK 240 TEMPERATURE (KELVIN) : 4.0 REMARK 240 PH : 4.00 REMARK 240 NUMBER OF CRYSTALS USED : NULL REMARK 240 MICROSCOPE MODEL : JEOL KYOTO-3000SFF REMARK 240 DETECTOR TYPE : KODAK SO-163 FILM REMARK 240 ACCELERATION VOLTAGE (KV) : 300 REMARK 240 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 240 RESOLUTION RANGE HIGH (A) : NULL REMARK 240 RESOLUTION RANGE LOW (A) : NULL REMARK 240 DATA SCALING SOFTWARE : NULL REMARK 240 COMPLETENESS FOR RANGE (%) : NULL REMARK 240 DATA REDUNDANCY : NULL REMARK 240 IN THE HIGHEST RESOLUTION SHELL REMARK 240 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) :NULL REMARK 240 HIGHEST RESOLUTION SHELL, RANGE LOW (A) :NULL REMARK 240 COMPLETENESS FOR SHELL (%) : NULL REMARK 240 DATA REDUNDANCY IN SHELL : NULL REMARK 240 R MERGE FOR SHELL (I) : NULL REMARK 240 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 240 SOFTWARE USED : NULL REMARK 240 STARTING MODEL : 4CZB REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 40.75000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.65000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.75000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.65000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 81.50000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR B 420 REMARK 465 LYS B 421 REMARK 465 GLU B 422 REMARK 465 GLU B 423 REMARK 465 SER B 424 REMARK 465 HIS B 425 REMARK 465 HIS B 426 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O MET B 300 CA LEU B 301 0.53 REMARK 500 CG1 VAL B 85 CD GLU B 148 0.62 REMARK 500 O PRO B 119 CZ PHE B 175 0.69 REMARK 500 C MET B 300 CB LEU B 301 0.69 REMARK 500 SD MET B 55 CE LYS B 297 0.99 REMARK 500 CD2 LEU B 92 CZ PHE B 341 1.00 REMARK 500 OG SER B 51 CA LYS B 297 1.00 REMARK 500 CG1 VAL B 85 OE2 GLU B 148 1.01 REMARK 500 CD LYS B 336 CG LEU B 412 1.12 REMARK 500 O PRO B 119 CE1 PHE B 175 1.14 REMARK 500 CD LYS B 336 CD2 LEU B 412 1.15 REMARK 500 CE LYS B 336 CD2 LEU B 412 1.16 REMARK 500 CE2 TYR B 304 CB ASP B 381 1.17 REMARK 500 CE LYS B 336 CG LEU B 412 1.17 REMARK 500 CG2 VAL B 120 CD1 ILE B 382 1.22 REMARK 500 O GLY B 389 OG1 THR B 393 1.25 REMARK 500 CG1 VAL B 324 CB PHE B 341 1.25 REMARK 500 CG PRO B 370 NZ LYS B 375 1.26 REMARK 500 O PHE B 214 CD1 TYR B 217 1.29 REMARK 500 N PHE B 263 OH TYR B 270 1.29 REMARK 500 CB VAL B 85 OE2 GLU B 148 1.31 REMARK 500 N ASP B 132 CB ARG B 347 1.33 REMARK 500 O MET B 300 CB LEU B 301 1.34 REMARK 500 CG MET B 55 O CYS B 295 1.35 REMARK 500 CE1 TYR B 304 OD2 ASP B 381 1.35 REMARK 500 CZ TYR B 304 OD2 ASP B 381 1.36 REMARK 500 CZ TYR B 304 CB ASP B 381 1.39 REMARK 500 CZ TYR B 304 CG ASP B 381 1.39 REMARK 500 N LYS B 332 N HIS B 333 1.42 REMARK 500 C MET B 300 CA LEU B 301 1.44 REMARK 500 CD2 LEU B 82 CG1 ILE B 151 1.44 REMARK 500 CG LYS B 332 N HIS B 333 1.44 REMARK 500 NZ LYS B 336 CA LEU B 412 1.45 REMARK 500 CB ALA B 54 O ALA B 294 1.46 REMARK 500 CG2 ILE B 79 CB ASP B 260 1.46 REMARK 500 CD2 LEU B 92 CE2 PHE B 341 1.47 REMARK 500 N ASP B 132 CA ARG B 347 1.50 REMARK 500 CA LYS B 332 N HIS B 333 1.50 REMARK 500 CD1 PHE B 263 CE2 TYR B 270 1.51 REMARK 500 CG1 VAL B 85 OE1 GLU B 148 1.52 REMARK 500 O SER B 246 N GLY B 247 1.52 REMARK 500 CA PHE B 263 OH TYR B 270 1.55 REMARK 500 O ALA B 130 NE ARG B 347 1.55 REMARK 500 O LEU B 343 O GLU B 344 1.55 REMARK 500 CB LYS B 332 N HIS B 333 1.55 REMARK 500 C SER B 246 CA GLY B 247 1.56 REMARK 500 CE1 PHE B 124 CG1 VAL B 311 1.56 REMARK 500 O ALA B 342 CD1 LEU B 343 1.57 REMARK 500 CD1 LEU B 328 CE2 PHE B 341 1.57 REMARK 500 CD1 LEU B 328 CD2 PHE B 341 1.59 REMARK 500 REMARK 500 THIS ENTRY HAS 138 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD1 PHE B 45 CZ ARG B 91 4555 0.47 REMARK 500 CE LYS B 83 OE1 GLU B 302 4455 0.69 REMARK 500 CG PHE B 45 NH1 ARG B 91 4555 0.88 REMARK 500 CD2 PHE B 45 NH1 ARG B 91 4555 1.11 REMARK 500 CG PHE B 45 CZ ARG B 91 4555 1.19 REMARK 500 CD2 LEU B 19 CZ PHE B 214 2655 1.19 REMARK 500 CD1 PHE B 45 NE ARG B 91 4555 1.21 REMARK 500 CD LYS B 22 O ASP B 213 2655 1.37 REMARK 500 CD1 PHE B 45 NH2 ARG B 91 4555 1.44 REMARK 500 CE LYS B 83 CD GLU B 302 4455 1.49 REMARK 500 CD1 PHE B 45 NH1 ARG B 91 4555 1.55 REMARK 500 SD MET B 1 OH TYR B 60 2655 1.62 REMARK 500 CG PHE B 45 NE ARG B 91 4555 1.64 REMARK 500 CE1 PHE B 45 CZ ARG B 91 4555 1.71 REMARK 500 NZ LYS B 83 CG GLU B 302 4455 1.71 REMARK 500 OG SER B 18 O TYR B 217 2655 1.73 REMARK 500 CD LYS B 83 OE1 GLU B 302 4455 1.74 REMARK 500 CG LYS B 22 O PHE B 214 2655 1.77 REMARK 500 CD LYS B 22 C ASP B 213 2655 1.80 REMARK 500 CE MET B 1 CE1 TYR B 60 2655 1.80 REMARK 500 CG LYS B 22 CA PHE B 214 2655 1.81 REMARK 500 NZ LYS B 83 OE1 GLU B 302 4455 1.81 REMARK 500 CE2 PHE B 45 NH1 ARG B 91 4555 1.84 REMARK 500 CE1 PHE B 45 NH2 ARG B 91 4555 1.86 REMARK 500 CG2 ILE B 29 CD1 LEU B 184 4555 1.90 REMARK 500 CB PHE B 45 CD ARG B 91 4555 1.97 REMARK 500 CG PHE B 45 CD ARG B 91 4555 1.97 REMARK 500 CA PHE B 45 NE ARG B 91 4555 1.98 REMARK 500 NZ LYS B 83 CD GLU B 302 4455 1.98 REMARK 500 SD MET B 1 CZ TYR B 60 2655 1.99 REMARK 500 CG LYS B 22 CD1 TYR B 217 2655 1.99 REMARK 500 CG LYS B 22 C PHE B 214 2655 2.00 REMARK 500 CE LYS B 22 O ASP B 213 2655 2.02 REMARK 500 NZ LYS B 22 O ASP B 213 2655 2.04 REMARK 500 O GLY B 11 CA GLY B 224 2655 2.07 REMARK 500 CB PHE B 45 NE ARG B 91 4555 2.07 REMARK 500 CD2 LEU B 19 CE2 PHE B 214 2655 2.07 REMARK 500 CB SER B 18 CB PRO B 220 2655 2.10 REMARK 500 NZ LYS B 22 CB ASP B 213 2655 2.13 REMARK 500 CA LEU B 19 CE2 PHE B 214 2655 2.14 REMARK 500 CG2 VAL B 15 N GLY B 225 2655 2.14 REMARK 500 CD LYS B 22 CA PHE B 214 2655 2.14 REMARK 500 CE1 PHE B 45 NH1 ARG B 91 4555 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER B 80 C LEU B 81 N -0.388 REMARK 500 PRO B 133 C ALA B 134 N -0.271 REMARK 500 VAL B 143 C ARG B 144 N -0.147 REMARK 500 GLU B 148 C VAL B 149 N -0.670 REMARK 500 SER B 157 CB SER B 157 OG -0.112 REMARK 500 SER B 157 C SER B 157 O 0.138 REMARK 500 SER B 157 C ILE B 158 N -0.201 REMARK 500 ILE B 188 C THR B 189 N 0.186 REMARK 500 ILE B 195 C VAL B 196 N 0.147 REMARK 500 LEU B 201 C ALA B 202 N 0.276 REMARK 500 HIS B 215 C GLU B 216 N -0.569 REMARK 500 SER B 246 C GLY B 247 N -0.887 REMARK 500 LEU B 282 C LEU B 283 N -0.190 REMARK 500 ILE B 288 C PHE B 289 N 0.261 REMARK 500 SER B 299 C MET B 300 N 0.261 REMARK 500 LEU B 318 C ALA B 319 N 0.210 REMARK 500 PHE B 391 C MET B 392 N 0.254 REMARK 500 MET B 392 C THR B 393 N -0.243 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 50 C - N - CD ANGL. DEV. = 12.7 DEGREES REMARK 500 SER B 80 CA - C - N ANGL. DEV. = -39.9 DEGREES REMARK 500 SER B 80 O - C - N ANGL. DEV. = 38.8 DEGREES REMARK 500 LEU B 81 C - N - CA ANGL. DEV. = -38.4 DEGREES REMARK 500 PRO B 119 C - N - CD ANGL. DEV. = -16.6 DEGREES REMARK 500 PRO B 133 CA - C - N ANGL. DEV. = -22.2 DEGREES REMARK 500 PRO B 133 O - C - N ANGL. DEV. = 13.9 DEGREES REMARK 500 PRO B 147 C - N - CD ANGL. DEV. = 13.3 DEGREES REMARK 500 GLU B 148 O - C - N ANGL. DEV. = -10.5 DEGREES REMARK 500 VAL B 149 C - N - CA ANGL. DEV. = 16.1 DEGREES REMARK 500 PRO B 183 C - N - CD ANGL. DEV. = 12.8 DEGREES REMARK 500 ILE B 188 O - C - N ANGL. DEV. = 10.3 DEGREES REMARK 500 ALA B 202 C - N - CA ANGL. DEV. = -16.4 DEGREES REMARK 500 SER B 246 CA - C - N ANGL. DEV. = -25.8 DEGREES REMARK 500 GLY B 247 C - N - CA ANGL. DEV. = -26.8 DEGREES REMARK 500 LEU B 282 O - C - N ANGL. DEV. = -14.9 DEGREES REMARK 500 PHE B 289 C - N - CA ANGL. DEV. = -17.8 DEGREES REMARK 500 SER B 299 O - C - N ANGL. DEV. = -23.1 DEGREES REMARK 500 PRO B 346 C - N - CD ANGL. DEV. = 12.8 DEGREES REMARK 500 PRO B 370 C - N - CD ANGL. DEV. = 12.7 DEGREES REMARK 500 PHE B 391 CA - C - N ANGL. DEV. = -16.0 DEGREES REMARK 500 PHE B 391 O - C - N ANGL. DEV. = 14.5 DEGREES REMARK 500 MET B 392 CA - C - N ANGL. DEV. = -20.2 DEGREES REMARK 500 MET B 392 O - C - N ANGL. DEV. = 15.9 DEGREES REMARK 500 THR B 393 C - N - CA ANGL. DEV. = -20.2 DEGREES REMARK 500 PRO B 418 C - N - CD ANGL. DEV. = 12.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 2 120.01 -36.14 REMARK 500 LYS B 28 -43.41 80.05 REMARK 500 ASP B 31 -57.35 -29.56 REMARK 500 MET B 77 -151.77 -134.80 REMARK 500 ARG B 78 -156.27 -151.43 REMARK 500 ILE B 79 -105.97 -135.44 REMARK 500 SER B 80 -42.60 10.33 REMARK 500 ASN B 113 8.75 84.12 REMARK 500 SER B 118 140.70 -31.15 REMARK 500 ALA B 134 -31.27 -33.86 REMARK 500 LEU B 136 -34.38 -142.12 REMARK 500 GLU B 148 -41.01 56.67 REMARK 500 LEU B 184 -40.74 -136.87 REMARK 500 ASP B 235 -60.94 -131.60 REMARK 500 CYS B 241 -37.10 -166.49 REMARK 500 SER B 246 169.97 64.98 REMARK 500 ASP B 266 -161.26 77.09 REMARK 500 ASP B 267 -178.19 85.59 REMARK 500 TYR B 272 -44.22 105.71 REMARK 500 ILE B 329 -30.27 -10.67 REMARK 500 LYS B 336 -25.54 -159.00 REMARK 500 LEU B 343 -12.74 85.99 REMARK 500 GLU B 344 -163.54 -19.50 REMARK 500 VAL B 350 -80.65 -81.37 REMARK 500 PRO B 351 -28.06 -37.71 REMARK 500 ILE B 369 96.29 -177.07 REMARK 500 PRO B 370 43.04 -100.74 REMARK 500 ALA B 371 6.41 44.74 REMARK 500 THR B 380 -38.67 -22.16 REMARK 500 LEU B 412 53.99 -108.93 REMARK 500 LEU B 413 13.46 -63.80 REMARK 500 GLU B 415 28.76 45.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO B 133 13.89 REMARK 500 SER B 246 -33.22 REMARK 500 SER B 299 -30.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-2636 RELATED DB: EMDB DBREF 4D0A B 1 426 UNP Q60362 NAH1_METJA 1 426 SEQRES 1 B 426 MET GLU LEU MET MET ALA ILE GLY TYR LEU GLY LEU ALA SEQRES 2 B 426 LEU VAL LEU GLY SER LEU VAL ALA LYS ILE ALA GLU LYS SEQRES 3 B 426 LEU LYS ILE PRO ASP ILE PRO LEU LEU LEU LEU LEU GLY SEQRES 4 B 426 LEU ILE ILE GLY PRO PHE LEU GLN ILE ILE PRO SER ASP SEQRES 5 B 426 SER ALA MET GLU ILE PHE GLU TYR ALA GLY PRO ILE GLY SEQRES 6 B 426 LEU ILE PHE ILE LEU LEU GLY GLY ALA PHE THR MET ARG SEQRES 7 B 426 ILE SER LEU LEU LYS ARG VAL ILE LYS THR VAL VAL ARG SEQRES 8 B 426 LEU ASP THR ILE THR PHE LEU ILE THR LEU LEU ILE SER SEQRES 9 B 426 GLY PHE ILE PHE ASN MET VAL LEU ASN LEU PRO TYR THR SEQRES 10 B 426 SER PRO VAL GLY TYR LEU PHE GLY ALA ILE THR ALA ALA SEQRES 11 B 426 THR ASP PRO ALA THR LEU ILE PRO VAL PHE SER ARG VAL SEQRES 12 B 426 ARG THR ASN PRO GLU VAL ALA ILE THR LEU GLU ALA GLU SEQRES 13 B 426 SER ILE PHE ASN ASP PRO LEU GLY ILE VAL SER THR SER SEQRES 14 B 426 VAL ILE LEU GLY LEU PHE GLY LEU PHE SER SER SER ASN SEQRES 15 B 426 PRO LEU ILE ASP LEU ILE THR LEU ALA GLY GLY ALA ILE SEQRES 16 B 426 VAL VAL GLY LEU LEU LEU ALA LYS ILE TYR GLU LYS ILE SEQRES 17 B 426 ILE ILE HIS CYS ASP PHE HIS GLU TYR VAL ALA PRO LEU SEQRES 18 B 426 VAL LEU GLY GLY ALA MET LEU LEU LEU TYR VAL GLY ASP SEQRES 19 B 426 ASP LEU LEU PRO SER ILE CYS GLY TYR GLY PHE SER GLY SEQRES 20 B 426 TYR MET ALA VAL ALA ILE MET GLY LEU TYR LEU GLY ASP SEQRES 21 B 426 ALA LEU PHE ARG ALA ASP ASP ILE ASP TYR LYS TYR ILE SEQRES 22 B 426 VAL SER PHE CYS ASP ASP LEU SER LEU LEU ALA ARG VAL SEQRES 23 B 426 PHE ILE PHE VAL PHE LEU GLY ALA CYS ILE LYS LEU SER SEQRES 24 B 426 MET LEU GLU ASN TYR PHE ILE PRO GLY LEU LEU VAL ALA SEQRES 25 B 426 LEU GLY SER ILE PHE LEU ALA ARG PRO LEU GLY VAL PHE SEQRES 26 B 426 LEU GLY LEU ILE GLY SER LYS HIS SER PHE LYS GLU LYS SEQRES 27 B 426 LEU TYR PHE ALA LEU GLU GLY PRO ARG GLY VAL VAL PRO SEQRES 28 B 426 ALA ALA LEU ALA VAL THR VAL GLY ILE GLU ILE LEU LYS SEQRES 29 B 426 ASN ALA ASP LYS ILE PRO ALA SER ILE THR LYS TYR ILE SEQRES 30 B 426 THR PRO THR ASP ILE ALA GLY THR ILE ILE ILE GLY THR SEQRES 31 B 426 PHE MET THR ILE LEU LEU SER VAL ILE LEU GLU ALA SER SEQRES 32 B 426 TRP ALA GLY MET LEU ALA LEU LYS LEU LEU GLY GLU TYR SEQRES 33 B 426 LYS PRO LYS TYR LYS GLU GLU SER HIS HIS HELIX 1 1 GLU B 2 LYS B 26 1 25 HELIX 2 2 PRO B 30 ILE B 42 1 13 HELIX 3 3 PRO B 50 THR B 76 1 27 HELIX 4 4 ILE B 79 LYS B 83 5 5 HELIX 5 5 VAL B 85 ASN B 113 1 29 HELIX 6 6 PRO B 119 ALA B 130 1 12 HELIX 7 7 LEU B 136 SER B 141 1 6 HELIX 8 8 GLU B 148 PHE B 175 1 28 HELIX 9 9 LEU B 184 CYS B 212 1 29 HELIX 10 10 TYR B 217 ASP B 235 1 19 HELIX 11 11 ASP B 235 ILE B 240 1 6 HELIX 12 12 SER B 246 ASP B 266 1 21 HELIX 13 13 TYR B 272 ILE B 296 1 25 HELIX 14 14 TYR B 304 LEU B 318 1 15 HELIX 15 15 LEU B 318 ILE B 329 1 12 HELIX 16 16 GLU B 337 ALA B 342 1 6 HELIX 17 17 VAL B 349 ILE B 369 1 21 HELIX 18 18 PRO B 379 LEU B 410 1 32 CISPEP 1 THR B 145 ASN B 146 0 -1.61 CISPEP 2 ILE B 377 THR B 378 0 4.99 CRYST1 81.500 103.300 200.000 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012270 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009681 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005000 0.00000