data_4D0G # _entry.id 4D0G # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4D0G pdb_00004d0g 10.2210/pdb4d0g/pdb PDBE EBI-60469 ? ? WWPDB D_1290060469 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-05-20 2 'Structure model' 1 1 2015-06-10 3 'Structure model' 1 2 2015-06-17 4 'Structure model' 1 3 2015-08-05 5 'Structure model' 1 4 2023-12-20 6 'Structure model' 1 5 2024-10-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' Other 8 5 'Structure model' 'Refinement description' 9 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 4 5 'Structure model' pdbx_database_status 5 5 'Structure model' pdbx_initial_refinement_model 6 5 'Structure model' pdbx_struct_conn_angle 7 5 'Structure model' struct_conn 8 5 'Structure model' struct_site 9 6 'Structure model' pdbx_entry_details 10 6 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_database_status.status_code_sf' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.value' 17 5 'Structure model' '_struct_conn.pdbx_dist_value' 18 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 19 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 20 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 21 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 22 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 23 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 24 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 25 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 26 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 27 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 28 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 29 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 30 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 31 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 32 5 'Structure model' '_struct_site.pdbx_auth_seq_id' 33 6 'Structure model' '_pdbx_entry_details.has_protein_modification' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4D0G _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2014-04-25 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lall, P.' 1 'Khan, A.R.' 2 # _citation.id primary _citation.title ;Structure-Function Analyses of the Interactions between Rab11 and Rab14 Small Gtpases with Their Shared Effector Rab Coupling Protein (Rcp). ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 290 _citation.page_first 18817 _citation.page_last ? _citation.year 2015 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26032412 _citation.pdbx_database_id_DOI 10.1074/JBC.M114.612366 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lall, P.' 1 ? primary 'Lindsay, A.J.' 2 ? primary 'Hanscom, S.' 3 ? primary 'Kecman, T.' 4 ? primary 'Taglauer, E.S.' 5 ? primary 'Mcveigh, U.M.' 6 ? primary 'Franklin, E.' 7 ? primary 'Mccaffrey, M.W.' 8 ? primary 'Khan, A.R.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RAS-RELATED PROTEIN RAB-14' 19773.424 1 ? YES 'RESIDUES 8-180' ? 2 polymer man 'RAB11 FAMILY-INTERACTING PROTEIN 1' 8014.319 1 ? ? 'RESIDUES 582-649' ? 3 non-polymer syn "GUANOSINE-5'-TRIPHOSPHATE" 523.180 1 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 5 water nat water 18.015 17 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'RAB11-FIP1, RAB-COUPLING PROTEIN' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MSYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGLERFRAVTRSYYRGAA GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF LEAAKKIYQNIQDGS ; ;MSYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGLERFRAVTRSYYRGAA GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF LEAAKKIYQNIQDGS ; A ? 2 'polypeptide(L)' no no MSDPAFAYAQLTHDELIQLVLKQKETISKKEFQVRELEDYIDNLLVRVMEETPNILRIPTQVGKKAGKM MSDPAFAYAQLTHDELIQLVLKQKETISKKEFQVRELEDYIDNLLVRVMEETPNILRIPTQVGKKAGKM C ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 "GUANOSINE-5'-TRIPHOSPHATE" GTP 4 'MAGNESIUM ION' MG 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 TYR n 1 4 SER n 1 5 TYR n 1 6 ILE n 1 7 PHE n 1 8 LYS n 1 9 TYR n 1 10 ILE n 1 11 ILE n 1 12 ILE n 1 13 GLY n 1 14 ASP n 1 15 MET n 1 16 GLY n 1 17 VAL n 1 18 GLY n 1 19 LYS n 1 20 SER n 1 21 CYS n 1 22 LEU n 1 23 LEU n 1 24 HIS n 1 25 GLN n 1 26 PHE n 1 27 THR n 1 28 GLU n 1 29 LYS n 1 30 LYS n 1 31 PHE n 1 32 MET n 1 33 ALA n 1 34 ASP n 1 35 CYS n 1 36 PRO n 1 37 HIS n 1 38 THR n 1 39 ILE n 1 40 GLY n 1 41 VAL n 1 42 GLU n 1 43 PHE n 1 44 GLY n 1 45 THR n 1 46 ARG n 1 47 ILE n 1 48 ILE n 1 49 GLU n 1 50 VAL n 1 51 SER n 1 52 GLY n 1 53 GLN n 1 54 LYS n 1 55 ILE n 1 56 LYS n 1 57 LEU n 1 58 GLN n 1 59 ILE n 1 60 TRP n 1 61 ASP n 1 62 THR n 1 63 ALA n 1 64 GLY n 1 65 LEU n 1 66 GLU n 1 67 ARG n 1 68 PHE n 1 69 ARG n 1 70 ALA n 1 71 VAL n 1 72 THR n 1 73 ARG n 1 74 SER n 1 75 TYR n 1 76 TYR n 1 77 ARG n 1 78 GLY n 1 79 ALA n 1 80 ALA n 1 81 GLY n 1 82 ALA n 1 83 LEU n 1 84 MET n 1 85 VAL n 1 86 TYR n 1 87 ASP n 1 88 ILE n 1 89 THR n 1 90 ARG n 1 91 ARG n 1 92 SER n 1 93 THR n 1 94 TYR n 1 95 ASN n 1 96 HIS n 1 97 LEU n 1 98 SER n 1 99 SER n 1 100 TRP n 1 101 LEU n 1 102 THR n 1 103 ASP n 1 104 ALA n 1 105 ARG n 1 106 ASN n 1 107 LEU n 1 108 THR n 1 109 ASN n 1 110 PRO n 1 111 ASN n 1 112 THR n 1 113 VAL n 1 114 ILE n 1 115 ILE n 1 116 LEU n 1 117 ILE n 1 118 GLY n 1 119 ASN n 1 120 LYS n 1 121 ALA n 1 122 ASP n 1 123 LEU n 1 124 GLU n 1 125 ALA n 1 126 GLN n 1 127 ARG n 1 128 ASP n 1 129 VAL n 1 130 THR n 1 131 TYR n 1 132 GLU n 1 133 GLU n 1 134 ALA n 1 135 LYS n 1 136 GLN n 1 137 PHE n 1 138 ALA n 1 139 GLU n 1 140 GLU n 1 141 ASN n 1 142 GLY n 1 143 LEU n 1 144 LEU n 1 145 PHE n 1 146 LEU n 1 147 GLU n 1 148 ALA n 1 149 SER n 1 150 ALA n 1 151 LYS n 1 152 THR n 1 153 GLY n 1 154 GLU n 1 155 ASN n 1 156 VAL n 1 157 GLU n 1 158 ASP n 1 159 ALA n 1 160 PHE n 1 161 LEU n 1 162 GLU n 1 163 ALA n 1 164 ALA n 1 165 LYS n 1 166 LYS n 1 167 ILE n 1 168 TYR n 1 169 GLN n 1 170 ASN n 1 171 ILE n 1 172 GLN n 1 173 ASP n 1 174 GLY n 1 175 SER n 2 1 MET n 2 2 SER n 2 3 ASP n 2 4 PRO n 2 5 ALA n 2 6 PHE n 2 7 ALA n 2 8 TYR n 2 9 ALA n 2 10 GLN n 2 11 LEU n 2 12 THR n 2 13 HIS n 2 14 ASP n 2 15 GLU n 2 16 LEU n 2 17 ILE n 2 18 GLN n 2 19 LEU n 2 20 VAL n 2 21 LEU n 2 22 LYS n 2 23 GLN n 2 24 LYS n 2 25 GLU n 2 26 THR n 2 27 ILE n 2 28 SER n 2 29 LYS n 2 30 LYS n 2 31 GLU n 2 32 PHE n 2 33 GLN n 2 34 VAL n 2 35 ARG n 2 36 GLU n 2 37 LEU n 2 38 GLU n 2 39 ASP n 2 40 TYR n 2 41 ILE n 2 42 ASP n 2 43 ASN n 2 44 LEU n 2 45 LEU n 2 46 VAL n 2 47 ARG n 2 48 VAL n 2 49 MET n 2 50 GLU n 2 51 GLU n 2 52 THR n 2 53 PRO n 2 54 ASN n 2 55 ILE n 2 56 LEU n 2 57 ARG n 2 58 ILE n 2 59 PRO n 2 60 THR n 2 61 GLN n 2 62 VAL n 2 63 GLY n 2 64 LYS n 2 65 LYS n 2 66 ALA n 2 67 GLY n 2 68 LYS n 2 69 MET n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? HUMAN ? ? ? ? ? ? ? ? 'HOMO SAPIENS' 9606 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? PLASMID ? ? ? PNIC28-BSA4 ? ? 2 1 sample ? ? ? HUMAN ? ? ? ? ? ? ? ? 'HOMO SAPIENS' 9606 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? PLASMID ? ? ? PNIC28-BSA4 ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 6 ? ? ? A . n A 1 2 SER 2 7 ? ? ? A . n A 1 3 TYR 3 8 8 TYR TYR A . n A 1 4 SER 4 9 9 SER SER A . n A 1 5 TYR 5 10 10 TYR TYR A . n A 1 6 ILE 6 11 11 ILE ILE A . n A 1 7 PHE 7 12 12 PHE PHE A . n A 1 8 LYS 8 13 13 LYS LYS A . n A 1 9 TYR 9 14 14 TYR TYR A . n A 1 10 ILE 10 15 15 ILE ILE A . n A 1 11 ILE 11 16 16 ILE ILE A . n A 1 12 ILE 12 17 17 ILE ILE A . n A 1 13 GLY 13 18 18 GLY GLY A . n A 1 14 ASP 14 19 19 ASP ASP A . n A 1 15 MET 15 20 20 MET MET A . n A 1 16 GLY 16 21 21 GLY GLY A . n A 1 17 VAL 17 22 22 VAL VAL A . n A 1 18 GLY 18 23 23 GLY GLY A . n A 1 19 LYS 19 24 24 LYS LYS A . n A 1 20 SER 20 25 25 SER SER A . n A 1 21 CYS 21 26 26 CYS CYS A . n A 1 22 LEU 22 27 27 LEU LEU A . n A 1 23 LEU 23 28 28 LEU LEU A . n A 1 24 HIS 24 29 29 HIS HIS A . n A 1 25 GLN 25 30 30 GLN GLN A . n A 1 26 PHE 26 31 31 PHE PHE A . n A 1 27 THR 27 32 32 THR THR A . n A 1 28 GLU 28 33 33 GLU GLU A . n A 1 29 LYS 29 34 34 LYS LYS A . n A 1 30 LYS 30 35 35 LYS LYS A . n A 1 31 PHE 31 36 36 PHE PHE A . n A 1 32 MET 32 37 37 MET MET A . n A 1 33 ALA 33 38 38 ALA ALA A . n A 1 34 ASP 34 39 39 ASP ASP A . n A 1 35 CYS 35 40 40 CYS CYS A . n A 1 36 PRO 36 41 41 PRO PRO A . n A 1 37 HIS 37 42 42 HIS HIS A . n A 1 38 THR 38 43 43 THR THR A . n A 1 39 ILE 39 44 44 ILE ILE A . n A 1 40 GLY 40 45 45 GLY GLY A . n A 1 41 VAL 41 46 46 VAL VAL A . n A 1 42 GLU 42 47 47 GLU GLU A . n A 1 43 PHE 43 48 48 PHE PHE A . n A 1 44 GLY 44 49 49 GLY GLY A . n A 1 45 THR 45 50 50 THR THR A . n A 1 46 ARG 46 51 51 ARG ARG A . n A 1 47 ILE 47 52 52 ILE ILE A . n A 1 48 ILE 48 53 53 ILE ILE A . n A 1 49 GLU 49 54 54 GLU GLU A . n A 1 50 VAL 50 55 55 VAL VAL A . n A 1 51 SER 51 56 56 SER SER A . n A 1 52 GLY 52 57 57 GLY GLY A . n A 1 53 GLN 53 58 58 GLN GLN A . n A 1 54 LYS 54 59 59 LYS LYS A . n A 1 55 ILE 55 60 60 ILE ILE A . n A 1 56 LYS 56 61 61 LYS LYS A . n A 1 57 LEU 57 62 62 LEU LEU A . n A 1 58 GLN 58 63 63 GLN GLN A . n A 1 59 ILE 59 64 64 ILE ILE A . n A 1 60 TRP 60 65 65 TRP TRP A . n A 1 61 ASP 61 66 66 ASP ASP A . n A 1 62 THR 62 67 67 THR THR A . n A 1 63 ALA 63 68 68 ALA ALA A . n A 1 64 GLY 64 69 69 GLY GLY A . n A 1 65 LEU 65 70 70 LEU LEU A . n A 1 66 GLU 66 71 71 GLU GLU A . n A 1 67 ARG 67 72 72 ARG ARG A . n A 1 68 PHE 68 73 73 PHE PHE A . n A 1 69 ARG 69 74 74 ARG ARG A . n A 1 70 ALA 70 75 75 ALA ALA A . n A 1 71 VAL 71 76 76 VAL VAL A . n A 1 72 THR 72 77 77 THR THR A . n A 1 73 ARG 73 78 78 ARG ARG A . n A 1 74 SER 74 79 79 SER SER A . n A 1 75 TYR 75 80 80 TYR TYR A . n A 1 76 TYR 76 81 81 TYR TYR A . n A 1 77 ARG 77 82 82 ARG ARG A . n A 1 78 GLY 78 83 83 GLY GLY A . n A 1 79 ALA 79 84 84 ALA ALA A . n A 1 80 ALA 80 85 85 ALA ALA A . n A 1 81 GLY 81 86 86 GLY GLY A . n A 1 82 ALA 82 87 87 ALA ALA A . n A 1 83 LEU 83 88 88 LEU LEU A . n A 1 84 MET 84 89 89 MET MET A . n A 1 85 VAL 85 90 90 VAL VAL A . n A 1 86 TYR 86 91 91 TYR TYR A . n A 1 87 ASP 87 92 92 ASP ASP A . n A 1 88 ILE 88 93 93 ILE ILE A . n A 1 89 THR 89 94 94 THR THR A . n A 1 90 ARG 90 95 95 ARG ARG A . n A 1 91 ARG 91 96 96 ARG ARG A . n A 1 92 SER 92 97 97 SER SER A . n A 1 93 THR 93 98 98 THR THR A . n A 1 94 TYR 94 99 99 TYR TYR A . n A 1 95 ASN 95 100 100 ASN ASN A . n A 1 96 HIS 96 101 101 HIS HIS A . n A 1 97 LEU 97 102 102 LEU LEU A . n A 1 98 SER 98 103 103 SER SER A . n A 1 99 SER 99 104 104 SER SER A . n A 1 100 TRP 100 105 105 TRP TRP A . n A 1 101 LEU 101 106 106 LEU LEU A . n A 1 102 THR 102 107 107 THR THR A . n A 1 103 ASP 103 108 108 ASP ASP A . n A 1 104 ALA 104 109 109 ALA ALA A . n A 1 105 ARG 105 110 110 ARG ARG A . n A 1 106 ASN 106 111 111 ASN ASN A . n A 1 107 LEU 107 112 112 LEU LEU A . n A 1 108 THR 108 113 113 THR THR A . n A 1 109 ASN 109 114 114 ASN ASN A . n A 1 110 PRO 110 115 115 PRO PRO A . n A 1 111 ASN 111 116 116 ASN ASN A . n A 1 112 THR 112 117 117 THR THR A . n A 1 113 VAL 113 118 118 VAL VAL A . n A 1 114 ILE 114 119 119 ILE ILE A . n A 1 115 ILE 115 120 120 ILE ILE A . n A 1 116 LEU 116 121 121 LEU LEU A . n A 1 117 ILE 117 122 122 ILE ILE A . n A 1 118 GLY 118 123 123 GLY GLY A . n A 1 119 ASN 119 124 124 ASN ASN A . n A 1 120 LYS 120 125 125 LYS LYS A . n A 1 121 ALA 121 126 126 ALA ALA A . n A 1 122 ASP 122 127 127 ASP ASP A . n A 1 123 LEU 123 128 128 LEU LEU A . n A 1 124 GLU 124 129 129 GLU GLU A . n A 1 125 ALA 125 130 130 ALA ALA A . n A 1 126 GLN 126 131 131 GLN GLN A . n A 1 127 ARG 127 132 132 ARG ARG A . n A 1 128 ASP 128 133 133 ASP ASP A . n A 1 129 VAL 129 134 134 VAL VAL A . n A 1 130 THR 130 135 135 THR THR A . n A 1 131 TYR 131 136 136 TYR TYR A . n A 1 132 GLU 132 137 137 GLU GLU A . n A 1 133 GLU 133 138 138 GLU GLU A . n A 1 134 ALA 134 139 139 ALA ALA A . n A 1 135 LYS 135 140 140 LYS LYS A . n A 1 136 GLN 136 141 141 GLN GLN A . n A 1 137 PHE 137 142 142 PHE PHE A . n A 1 138 ALA 138 143 143 ALA ALA A . n A 1 139 GLU 139 144 144 GLU GLU A . n A 1 140 GLU 140 145 145 GLU GLU A . n A 1 141 ASN 141 146 146 ASN ASN A . n A 1 142 GLY 142 147 147 GLY GLY A . n A 1 143 LEU 143 148 148 LEU LEU A . n A 1 144 LEU 144 149 149 LEU LEU A . n A 1 145 PHE 145 150 150 PHE PHE A . n A 1 146 LEU 146 151 151 LEU LEU A . n A 1 147 GLU 147 152 152 GLU GLU A . n A 1 148 ALA 148 153 153 ALA ALA A . n A 1 149 SER 149 154 154 SER SER A . n A 1 150 ALA 150 155 155 ALA ALA A . n A 1 151 LYS 151 156 156 LYS LYS A . n A 1 152 THR 152 157 157 THR THR A . n A 1 153 GLY 153 158 158 GLY GLY A . n A 1 154 GLU 154 159 159 GLU GLU A . n A 1 155 ASN 155 160 160 ASN ASN A . n A 1 156 VAL 156 161 161 VAL VAL A . n A 1 157 GLU 157 162 162 GLU GLU A . n A 1 158 ASP 158 163 163 ASP ASP A . n A 1 159 ALA 159 164 164 ALA ALA A . n A 1 160 PHE 160 165 165 PHE PHE A . n A 1 161 LEU 161 166 166 LEU LEU A . n A 1 162 GLU 162 167 167 GLU GLU A . n A 1 163 ALA 163 168 168 ALA ALA A . n A 1 164 ALA 164 169 169 ALA ALA A . n A 1 165 LYS 165 170 170 LYS LYS A . n A 1 166 LYS 166 171 171 LYS LYS A . n A 1 167 ILE 167 172 172 ILE ILE A . n A 1 168 TYR 168 173 173 TYR TYR A . n A 1 169 GLN 169 174 174 GLN GLN A . n A 1 170 ASN 170 175 ? ? ? A . n A 1 171 ILE 171 176 ? ? ? A . n A 1 172 GLN 172 177 ? ? ? A . n A 1 173 ASP 173 178 ? ? ? A . n A 1 174 GLY 174 179 ? ? ? A . n A 1 175 SER 175 180 ? ? ? A . n B 2 1 MET 1 581 ? ? ? C . n B 2 2 SER 2 582 ? ? ? C . n B 2 3 ASP 3 583 ? ? ? C . n B 2 4 PRO 4 584 ? ? ? C . n B 2 5 ALA 5 585 ? ? ? C . n B 2 6 PHE 6 586 ? ? ? C . n B 2 7 ALA 7 587 ? ? ? C . n B 2 8 TYR 8 588 ? ? ? C . n B 2 9 ALA 9 589 ? ? ? C . n B 2 10 GLN 10 590 ? ? ? C . n B 2 11 LEU 11 591 ? ? ? C . n B 2 12 THR 12 592 ? ? ? C . n B 2 13 HIS 13 593 ? ? ? C . n B 2 14 ASP 14 594 ? ? ? C . n B 2 15 GLU 15 595 595 GLU GLU C . n B 2 16 LEU 16 596 596 LEU LEU C . n B 2 17 ILE 17 597 597 ILE ILE C . n B 2 18 GLN 18 598 598 GLN GLN C . n B 2 19 LEU 19 599 599 LEU LEU C . n B 2 20 VAL 20 600 600 VAL VAL C . n B 2 21 LEU 21 601 601 LEU LEU C . n B 2 22 LYS 22 602 602 LYS LYS C . n B 2 23 GLN 23 603 603 GLN GLN C . n B 2 24 LYS 24 604 604 LYS LYS C . n B 2 25 GLU 25 605 605 GLU GLU C . n B 2 26 THR 26 606 606 THR THR C . n B 2 27 ILE 27 607 607 ILE ILE C . n B 2 28 SER 28 608 608 SER SER C . n B 2 29 LYS 29 609 609 LYS LYS C . n B 2 30 LYS 30 610 610 LYS LYS C . n B 2 31 GLU 31 611 611 GLU GLU C . n B 2 32 PHE 32 612 612 PHE PHE C . n B 2 33 GLN 33 613 613 GLN GLN C . n B 2 34 VAL 34 614 614 VAL VAL C . n B 2 35 ARG 35 615 615 ARG ARG C . n B 2 36 GLU 36 616 616 GLU GLU C . n B 2 37 LEU 37 617 617 LEU LEU C . n B 2 38 GLU 38 618 618 GLU GLU C . n B 2 39 ASP 39 619 619 ASP ASP C . n B 2 40 TYR 40 620 620 TYR TYR C . n B 2 41 ILE 41 621 621 ILE ILE C . n B 2 42 ASP 42 622 622 ASP ASP C . n B 2 43 ASN 43 623 623 ASN ASN C . n B 2 44 LEU 44 624 624 LEU LEU C . n B 2 45 LEU 45 625 625 LEU LEU C . n B 2 46 VAL 46 626 626 VAL VAL C . n B 2 47 ARG 47 627 627 ARG ARG C . n B 2 48 VAL 48 628 628 VAL VAL C . n B 2 49 MET 49 629 629 MET MET C . n B 2 50 GLU 50 630 630 GLU GLU C . n B 2 51 GLU 51 631 631 GLU GLU C . n B 2 52 THR 52 632 632 THR THR C . n B 2 53 PRO 53 633 633 PRO PRO C . n B 2 54 ASN 54 634 634 ASN ASN C . n B 2 55 ILE 55 635 635 ILE ILE C . n B 2 56 LEU 56 636 636 LEU LEU C . n B 2 57 ARG 57 637 637 ARG ARG C . n B 2 58 ILE 58 638 638 ILE ILE C . n B 2 59 PRO 59 639 639 PRO PRO C . n B 2 60 THR 60 640 640 THR THR C . n B 2 61 GLN 61 641 ? ? ? C . n B 2 62 VAL 62 642 ? ? ? C . n B 2 63 GLY 63 643 ? ? ? C . n B 2 64 LYS 64 644 ? ? ? C . n B 2 65 LYS 65 645 ? ? ? C . n B 2 66 ALA 66 646 ? ? ? C . n B 2 67 GLY 67 647 ? ? ? C . n B 2 68 LYS 68 648 ? ? ? C . n B 2 69 MET 69 649 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GTP 1 900 900 GTP GTP A . D 4 MG 1 1175 1175 MG MG A . E 5 HOH 1 2001 2001 HOH HOH A . E 5 HOH 2 2002 2002 HOH HOH A . E 5 HOH 3 2003 2003 HOH HOH A . E 5 HOH 4 2004 2004 HOH HOH A . E 5 HOH 5 2005 2005 HOH HOH A . E 5 HOH 6 2006 2006 HOH HOH A . E 5 HOH 7 2007 2007 HOH HOH A . E 5 HOH 8 2008 2008 HOH HOH A . E 5 HOH 9 2009 2009 HOH HOH A . E 5 HOH 10 2010 2010 HOH HOH A . E 5 HOH 11 2011 2011 HOH HOH A . E 5 HOH 12 2012 2012 HOH HOH A . E 5 HOH 13 2013 2013 HOH HOH A . E 5 HOH 14 2014 2014 HOH HOH A . E 5 HOH 15 2015 2015 HOH HOH A . E 5 HOH 16 2016 2016 HOH HOH A . E 5 HOH 17 2017 2017 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A TYR 8 ? CG ? A TYR 3 CG 2 1 Y 1 A TYR 8 ? CD1 ? A TYR 3 CD1 3 1 Y 1 A TYR 8 ? CD2 ? A TYR 3 CD2 4 1 Y 1 A TYR 8 ? CE1 ? A TYR 3 CE1 5 1 Y 1 A TYR 8 ? CE2 ? A TYR 3 CE2 6 1 Y 1 A TYR 8 ? CZ ? A TYR 3 CZ 7 1 Y 1 A TYR 8 ? OH ? A TYR 3 OH 8 1 Y 1 A SER 9 ? OG ? A SER 4 OG 9 1 Y 1 A TYR 10 ? CG ? A TYR 5 CG 10 1 Y 1 A TYR 10 ? CD1 ? A TYR 5 CD1 11 1 Y 1 A TYR 10 ? CD2 ? A TYR 5 CD2 12 1 Y 1 A TYR 10 ? CE1 ? A TYR 5 CE1 13 1 Y 1 A TYR 10 ? CE2 ? A TYR 5 CE2 14 1 Y 1 A TYR 10 ? CZ ? A TYR 5 CZ 15 1 Y 1 A TYR 10 ? OH ? A TYR 5 OH 16 1 Y 1 A GLU 33 ? CG ? A GLU 28 CG 17 1 Y 1 A GLU 33 ? CD ? A GLU 28 CD 18 1 Y 1 A GLU 33 ? OE1 ? A GLU 28 OE1 19 1 Y 1 A GLU 33 ? OE2 ? A GLU 28 OE2 20 1 Y 1 A LYS 35 ? CG ? A LYS 30 CG 21 1 Y 1 A LYS 35 ? CD ? A LYS 30 CD 22 1 Y 1 A LYS 35 ? CE ? A LYS 30 CE 23 1 Y 1 A LYS 35 ? NZ ? A LYS 30 NZ 24 1 Y 1 A MET 37 ? CG ? A MET 32 CG 25 1 Y 1 A MET 37 ? SD ? A MET 32 SD 26 1 Y 1 A MET 37 ? CE ? A MET 32 CE 27 1 Y 1 A LYS 140 ? CG ? A LYS 135 CG 28 1 Y 1 A LYS 140 ? CD ? A LYS 135 CD 29 1 Y 1 A LYS 140 ? CE ? A LYS 135 CE 30 1 Y 1 A LYS 140 ? NZ ? A LYS 135 NZ 31 1 Y 1 A LEU 166 ? CG ? A LEU 161 CG 32 1 Y 1 A LEU 166 ? CD1 ? A LEU 161 CD1 33 1 Y 1 A LEU 166 ? CD2 ? A LEU 161 CD2 34 1 Y 1 A GLU 167 ? CG ? A GLU 162 CG 35 1 Y 1 A GLU 167 ? CD ? A GLU 162 CD 36 1 Y 1 A GLU 167 ? OE1 ? A GLU 162 OE1 37 1 Y 1 A GLU 167 ? OE2 ? A GLU 162 OE2 38 1 Y 1 A LYS 171 ? CG ? A LYS 166 CG 39 1 Y 1 A LYS 171 ? CD ? A LYS 166 CD 40 1 Y 1 A LYS 171 ? CE ? A LYS 166 CE 41 1 Y 1 A LYS 171 ? NZ ? A LYS 166 NZ 42 1 Y 1 A GLN 174 ? CG ? A GLN 169 CG 43 1 Y 1 A GLN 174 ? CD ? A GLN 169 CD 44 1 Y 1 A GLN 174 ? OE1 ? A GLN 169 OE1 45 1 Y 1 A GLN 174 ? NE2 ? A GLN 169 NE2 46 1 Y 1 C LEU 601 ? CG ? B LEU 21 CG 47 1 Y 1 C LEU 601 ? CD1 ? B LEU 21 CD1 48 1 Y 1 C LEU 601 ? CD2 ? B LEU 21 CD2 49 1 Y 1 C LYS 604 ? CG ? B LYS 24 CG 50 1 Y 1 C LYS 604 ? CD ? B LYS 24 CD 51 1 Y 1 C LYS 604 ? CE ? B LYS 24 CE 52 1 Y 1 C LYS 604 ? NZ ? B LYS 24 NZ 53 1 Y 1 C GLU 605 ? CG ? B GLU 25 CG 54 1 Y 1 C GLU 605 ? CD ? B GLU 25 CD 55 1 Y 1 C GLU 605 ? OE1 ? B GLU 25 OE1 56 1 Y 1 C GLU 605 ? OE2 ? B GLU 25 OE2 57 1 Y 1 C ARG 615 ? CG ? B ARG 35 CG 58 1 Y 1 C ARG 615 ? CD ? B ARG 35 CD 59 1 Y 1 C ARG 615 ? NE ? B ARG 35 NE 60 1 Y 1 C ARG 615 ? CZ ? B ARG 35 CZ 61 1 Y 1 C ARG 615 ? NH1 ? B ARG 35 NH1 62 1 Y 1 C ARG 615 ? NH2 ? B ARG 35 NH2 63 1 Y 1 C THR 640 ? OG1 ? B THR 60 OG1 64 1 Y 1 C THR 640 ? CG2 ? B THR 60 CG2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.8.0069 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 MOLREP phasing . ? 4 # _cell.entry_id 4D0G _cell.length_a 95.870 _cell.length_b 148.228 _cell.length_c 38.808 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4D0G _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 # _exptl.entry_id 4D0G _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.48 _exptl_crystal.density_percent_sol 50.42 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.75 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '14% PEG 8000, 0.1 M HEPES PH 6.75' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_wavelength 0.979 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4D0G _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.00 _reflns.d_resolution_high 2.50 _reflns.number_obs 9973 _reflns.number_all ? _reflns.percent_possible_obs 96.5 _reflns.pdbx_Rmerge_I_obs 0.10 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 8.50 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 8.9 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.50 _reflns_shell.d_res_low 2.54 _reflns_shell.percent_possible_all 70.1 _reflns_shell.Rmerge_I_obs 0.80 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.72 _reflns_shell.pdbx_redundancy 5.6 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4D0G _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 8711 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 80.50 _refine.ls_d_res_high 2.50 _refine.ls_percent_reflns_obs 96.98 _refine.ls_R_factor_obs 0.23113 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.22403 _refine.ls_R_factor_R_free 0.29438 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.9 _refine.ls_number_reflns_R_free 960 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.941 _refine.correlation_coeff_Fo_to_Fc_free 0.885 _refine.B_iso_mean 61.674 _refine.aniso_B[1][1] -0.03 _refine.aniso_B[2][2] -0.08 _refine.aniso_B[3][3] 0.11 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 1.00 _refine.pdbx_solvent_shrinkage_radii 1.00 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES WITH TLS ADDED. N- AND C-TERMINI ARE DISORDERED, AND SEVERAL SIDE-CHAINS ARE MODELED ALANINE DUE TO A LACK OF ELECTRON DENSITY. ; _refine.pdbx_starting_model 'PDB ENTRY 4DRZ' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.564 _refine.pdbx_overall_ESU_R_Free 0.342 _refine.overall_SU_ML 0.276 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 25.069 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1656 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 33 _refine_hist.number_atoms_solvent 17 _refine_hist.number_atoms_total 1706 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 80.50 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.008 0.019 ? 1726 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 1662 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.302 1.976 ? 2346 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.764 3.000 ? 3803 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.063 0.200 ? 270 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 1937 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 397 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.092 4.251 ? 852 'X-RAY DIFFRACTION' ? r_mcbond_other 2.083 4.246 ? 851 'X-RAY DIFFRACTION' ? r_mcangle_it 3.393 6.364 ? 1062 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.304 4.453 ? 874 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.503 _refine_ls_shell.d_res_low 2.568 _refine_ls_shell.number_reflns_R_work 622 _refine_ls_shell.R_factor_R_work 0.306 _refine_ls_shell.percent_reflns_obs 92.90 _refine_ls_shell.R_factor_R_free 0.364 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 58 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 4D0G _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4D0G _struct.title 'Structure of Rab14 in complex with Rab-Coupling Protein (RCP)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4D0G _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'HYDROLASE, RAB14 GTPASE, ENDOSOMAL TRAFFICKING, RAB- BINDING DOMAIN (RBD), EFFECTOR RECRUITMENT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP RAB14_HUMAN 1 ? ? P61106 ? 2 UNP RFIP1_HUMAN 2 ? ? Q6WKZ4 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4D0G A 3 ? 175 ? P61106 8 ? 180 ? 8 180 2 2 4D0G C 2 ? 69 ? Q6WKZ4 582 ? 649 ? 582 649 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4D0G MET A 1 ? UNP P61106 ? ? 'expression tag' 6 1 1 4D0G SER A 2 ? UNP P61106 ? ? 'expression tag' 7 2 1 4D0G LEU A 65 ? UNP P61106 GLN 70 'engineered mutation' 70 3 2 4D0G MET C 1 ? UNP Q6WKZ4 ? ? 'expression tag' 581 4 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2160 ? 1 MORE -24.7 ? 1 'SSA (A^2)' 11450 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 18 ? LYS A 29 ? GLY A 23 LYS A 34 1 ? 12 HELX_P HELX_P2 2 VAL A 71 ? ARG A 77 ? VAL A 76 ARG A 82 1 ? 7 HELX_P HELX_P3 3 ARG A 90 ? HIS A 96 ? ARG A 95 HIS A 101 1 ? 7 HELX_P HELX_P4 4 HIS A 96 ? THR A 108 ? HIS A 101 THR A 113 1 ? 13 HELX_P HELX_P5 5 LEU A 123 ? ARG A 127 ? LEU A 128 ARG A 132 5 ? 5 HELX_P HELX_P6 6 THR A 130 ? ASN A 141 ? THR A 135 ASN A 146 1 ? 12 HELX_P HELX_P7 7 ASN A 155 ? TYR A 168 ? ASN A 160 TYR A 173 1 ? 14 HELX_P HELX_P8 8 GLN B 18 ? THR B 52 ? GLN C 598 THR C 632 1 ? 35 HELX_P HELX_P9 9 PRO B 53 ? LEU B 56 ? PRO C 633 LEU C 636 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 21 SG ? ? ? 1_555 A CYS 35 SG ? ? A CYS 26 A CYS 40 1_555 ? ? ? ? ? ? ? 2.057 ? ? metalc1 metalc ? ? A SER 20 OG ? ? ? 1_555 D MG . MG ? ? A SER 25 A MG 1175 1_555 ? ? ? ? ? ? ? 1.874 ? ? metalc2 metalc ? ? A THR 38 OG1 ? ? ? 1_555 D MG . MG ? ? A THR 43 A MG 1175 1_555 ? ? ? ? ? ? ? 2.358 ? ? metalc3 metalc ? ? C GTP . O3G ? ? ? 1_555 D MG . MG ? ? A GTP 900 A MG 1175 1_555 ? ? ? ? ? ? ? 1.999 ? ? metalc4 metalc ? ? C GTP . O2B ? ? ? 1_555 D MG . MG ? ? A GTP 900 A MG 1175 1_555 ? ? ? ? ? ? ? 1.894 ? ? metalc5 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 1175 A HOH 2005 1_555 ? ? ? ? ? ? ? 2.091 ? ? metalc6 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 1175 A HOH 2006 1_555 ? ? ? ? ? ? ? 2.268 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OG ? A SER 20 ? A SER 25 ? 1_555 MG ? D MG . ? A MG 1175 ? 1_555 OG1 ? A THR 38 ? A THR 43 ? 1_555 79.9 ? 2 OG ? A SER 20 ? A SER 25 ? 1_555 MG ? D MG . ? A MG 1175 ? 1_555 O3G ? C GTP . ? A GTP 900 ? 1_555 165.8 ? 3 OG1 ? A THR 38 ? A THR 43 ? 1_555 MG ? D MG . ? A MG 1175 ? 1_555 O3G ? C GTP . ? A GTP 900 ? 1_555 86.8 ? 4 OG ? A SER 20 ? A SER 25 ? 1_555 MG ? D MG . ? A MG 1175 ? 1_555 O2B ? C GTP . ? A GTP 900 ? 1_555 90.1 ? 5 OG1 ? A THR 38 ? A THR 43 ? 1_555 MG ? D MG . ? A MG 1175 ? 1_555 O2B ? C GTP . ? A GTP 900 ? 1_555 165.4 ? 6 O3G ? C GTP . ? A GTP 900 ? 1_555 MG ? D MG . ? A MG 1175 ? 1_555 O2B ? C GTP . ? A GTP 900 ? 1_555 101.9 ? 7 OG ? A SER 20 ? A SER 25 ? 1_555 MG ? D MG . ? A MG 1175 ? 1_555 O ? E HOH . ? A HOH 2005 ? 1_555 97.9 ? 8 OG1 ? A THR 38 ? A THR 43 ? 1_555 MG ? D MG . ? A MG 1175 ? 1_555 O ? E HOH . ? A HOH 2005 ? 1_555 88.2 ? 9 O3G ? C GTP . ? A GTP 900 ? 1_555 MG ? D MG . ? A MG 1175 ? 1_555 O ? E HOH . ? A HOH 2005 ? 1_555 86.6 ? 10 O2B ? C GTP . ? A GTP 900 ? 1_555 MG ? D MG . ? A MG 1175 ? 1_555 O ? E HOH . ? A HOH 2005 ? 1_555 103.9 ? 11 OG ? A SER 20 ? A SER 25 ? 1_555 MG ? D MG . ? A MG 1175 ? 1_555 O ? E HOH . ? A HOH 2006 ? 1_555 85.8 ? 12 OG1 ? A THR 38 ? A THR 43 ? 1_555 MG ? D MG . ? A MG 1175 ? 1_555 O ? E HOH . ? A HOH 2006 ? 1_555 77.0 ? 13 O3G ? C GTP . ? A GTP 900 ? 1_555 MG ? D MG . ? A MG 1175 ? 1_555 O ? E HOH . ? A HOH 2006 ? 1_555 86.2 ? 14 O2B ? C GTP . ? A GTP 900 ? 1_555 MG ? D MG . ? A MG 1175 ? 1_555 O ? E HOH . ? A HOH 2006 ? 1_555 91.8 ? 15 O ? E HOH . ? A HOH 2005 ? 1_555 MG ? D MG . ? A MG 1175 ? 1_555 O ? E HOH . ? A HOH 2006 ? 1_555 163.9 ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id CYS _pdbx_modification_feature.label_asym_id A _pdbx_modification_feature.label_seq_id 21 _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id CYS _pdbx_modification_feature.modified_residue_label_asym_id A _pdbx_modification_feature.modified_residue_label_seq_id 35 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id CYS _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 26 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id CYS _pdbx_modification_feature.modified_residue_auth_asym_id A _pdbx_modification_feature.modified_residue_auth_seq_id 40 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 1_555 _pdbx_modification_feature.comp_id_linking_atom SG _pdbx_modification_feature.modified_residue_id_linking_atom SG _pdbx_modification_feature.modified_residue_id . _pdbx_modification_feature.ref_pcm_id . _pdbx_modification_feature.ref_comp_id . _pdbx_modification_feature.type None _pdbx_modification_feature.category 'Disulfide bridge' # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ILE _struct_mon_prot_cis.label_seq_id 58 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ILE _struct_mon_prot_cis.auth_seq_id 638 _struct_mon_prot_cis.auth_asym_id C _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 59 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 639 _struct_mon_prot_cis.pdbx_auth_asym_id_2 C _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -3.54 # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? parallel AA 3 4 ? parallel AA 4 5 ? parallel AA 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 VAL A 41 ? VAL A 50 ? VAL A 46 VAL A 55 AA 2 GLN A 53 ? THR A 62 ? GLN A 58 THR A 67 AA 3 ILE A 6 ? ILE A 12 ? ILE A 11 ILE A 17 AA 4 GLY A 81 ? ASP A 87 ? GLY A 86 ASP A 92 AA 5 VAL A 113 ? ASN A 119 ? VAL A 118 ASN A 124 AA 6 LEU A 144 ? GLU A 147 ? LEU A 149 GLU A 152 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N VAL A 50 ? N VAL A 55 O GLN A 53 ? O GLN A 58 AA 2 3 N GLN A 58 ? N GLN A 63 O PHE A 7 ? O PHE A 12 AA 3 4 N ILE A 10 ? N ILE A 15 O GLY A 81 ? O GLY A 86 AA 4 5 N ALA A 82 ? N ALA A 87 O VAL A 113 ? O VAL A 118 AA 5 6 N LEU A 116 ? N LEU A 121 O LEU A 144 ? O LEU A 149 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GTP 900 ? 25 'BINDING SITE FOR RESIDUE GTP A 900' AC2 Software A MG 1175 ? 5 'BINDING SITE FOR RESIDUE MG A 1175' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 25 ASP A 14 ? ASP A 19 . ? 1_555 ? 2 AC1 25 MET A 15 ? MET A 20 . ? 1_555 ? 3 AC1 25 GLY A 16 ? GLY A 21 . ? 1_555 ? 4 AC1 25 VAL A 17 ? VAL A 22 . ? 1_555 ? 5 AC1 25 GLY A 18 ? GLY A 23 . ? 1_555 ? 6 AC1 25 LYS A 19 ? LYS A 24 . ? 1_555 ? 7 AC1 25 SER A 20 ? SER A 25 . ? 1_555 ? 8 AC1 25 CYS A 21 ? CYS A 26 . ? 1_555 ? 9 AC1 25 PHE A 31 ? PHE A 36 . ? 1_555 ? 10 AC1 25 ALA A 33 ? ALA A 38 . ? 1_555 ? 11 AC1 25 ASP A 34 ? ASP A 39 . ? 1_555 ? 12 AC1 25 CYS A 35 ? CYS A 40 . ? 1_555 ? 13 AC1 25 HIS A 37 ? HIS A 42 . ? 1_555 ? 14 AC1 25 THR A 38 ? THR A 43 . ? 1_555 ? 15 AC1 25 GLY A 64 ? GLY A 69 . ? 1_555 ? 16 AC1 25 ASN A 119 ? ASN A 124 . ? 1_555 ? 17 AC1 25 LYS A 120 ? LYS A 125 . ? 1_555 ? 18 AC1 25 ASP A 122 ? ASP A 127 . ? 1_555 ? 19 AC1 25 LEU A 123 ? LEU A 128 . ? 1_555 ? 20 AC1 25 SER A 149 ? SER A 154 . ? 1_555 ? 21 AC1 25 ALA A 150 ? ALA A 155 . ? 1_555 ? 22 AC1 25 LYS A 151 ? LYS A 156 . ? 1_555 ? 23 AC1 25 MG D . ? MG A 1175 . ? 1_555 ? 24 AC1 25 HOH E . ? HOH A 2005 . ? 1_555 ? 25 AC1 25 HOH E . ? HOH A 2006 . ? 1_555 ? 26 AC2 5 SER A 20 ? SER A 25 . ? 1_555 ? 27 AC2 5 THR A 38 ? THR A 43 . ? 1_555 ? 28 AC2 5 GTP C . ? GTP A 900 . ? 1_555 ? 29 AC2 5 HOH E . ? HOH A 2005 . ? 1_555 ? 30 AC2 5 HOH E . ? HOH A 2006 . ? 1_555 ? # _pdbx_entry_details.entry_id 4D0G _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;NON-NATIVE RESIDUES AT N-TERMINUS DUE TO CLONING SITE. ALSO, SEVERAL RESIDUES HAVE FLEXIBLE SIDE CHAINS AND ARE MODELED AS ALANINE. FINALLY, THERE IS A SINGLE-SITE MUTATION (Q70L) IN RAB14. CHAIN C IS UNIPROT ISOFORM 3 Q6WKZ4-3. ; _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 33 ? ? -150.71 25.55 2 1 LYS A 34 ? ? 15.98 46.81 3 1 ALA A 38 ? ? -140.14 -81.40 4 1 ASP A 39 ? ? -64.84 78.07 5 1 PRO A 41 ? ? -99.32 44.04 6 1 HIS A 42 ? ? 66.75 126.53 7 1 SER A 56 ? ? 36.55 52.87 8 1 LEU A 70 ? ? 9.20 -89.62 9 1 GLU A 71 ? ? 58.47 -66.85 10 1 LYS A 125 ? ? 79.57 31.47 11 1 TYR A 173 ? ? 140.87 -173.17 12 1 LEU C 596 ? ? -161.34 87.40 13 1 THR C 632 ? ? -157.93 73.29 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 MET A 37 ? ? ALA A 38 ? ? -53.30 2 1 ILE A 44 ? ? GLY A 45 ? ? -124.72 3 1 GLY A 69 ? ? LEU A 70 ? ? 142.97 4 1 LEU A 70 ? ? GLU A 71 ? ? -149.85 5 1 ILE A 172 ? ? TYR A 173 ? ? 140.41 6 1 PRO C 639 ? ? THR C 640 ? ? -136.51 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -28.8750 -18.6420 5.3810 0.1731 0.0369 0.0612 0.0668 -0.0512 -0.0385 2.8040 4.5529 2.6481 -1.2856 0.3896 -1.3767 -0.1560 -0.1030 0.0308 0.2705 0.2472 -0.3251 0.1292 0.1012 -0.0912 'X-RAY DIFFRACTION' 2 ? refined -46.3400 -29.4390 -10.9770 0.0688 0.0197 0.1056 0.0116 0.0257 0.0177 2.2297 13.3787 2.5552 1.9941 0.7558 2.4053 -0.2639 0.0052 -0.1970 -0.5639 0.1505 0.2595 0.0281 0.0281 0.1135 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 8 ? ? A 174 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 C 595 ? ? C 640 ? ? ? ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 6 ? A MET 1 2 1 Y 1 A SER 7 ? A SER 2 3 1 Y 1 A ASN 175 ? A ASN 170 4 1 Y 1 A ILE 176 ? A ILE 171 5 1 Y 1 A GLN 177 ? A GLN 172 6 1 Y 1 A ASP 178 ? A ASP 173 7 1 Y 1 A GLY 179 ? A GLY 174 8 1 Y 1 A SER 180 ? A SER 175 9 1 Y 1 C MET 581 ? B MET 1 10 1 Y 1 C SER 582 ? B SER 2 11 1 Y 1 C ASP 583 ? B ASP 3 12 1 Y 1 C PRO 584 ? B PRO 4 13 1 Y 1 C ALA 585 ? B ALA 5 14 1 Y 1 C PHE 586 ? B PHE 6 15 1 Y 1 C ALA 587 ? B ALA 7 16 1 Y 1 C TYR 588 ? B TYR 8 17 1 Y 1 C ALA 589 ? B ALA 9 18 1 Y 1 C GLN 590 ? B GLN 10 19 1 Y 1 C LEU 591 ? B LEU 11 20 1 Y 1 C THR 592 ? B THR 12 21 1 Y 1 C HIS 593 ? B HIS 13 22 1 Y 1 C ASP 594 ? B ASP 14 23 1 Y 1 C GLN 641 ? B GLN 61 24 1 Y 1 C VAL 642 ? B VAL 62 25 1 Y 1 C GLY 643 ? B GLY 63 26 1 Y 1 C LYS 644 ? B LYS 64 27 1 Y 1 C LYS 645 ? B LYS 65 28 1 Y 1 C ALA 646 ? B ALA 66 29 1 Y 1 C GLY 647 ? B GLY 67 30 1 Y 1 C LYS 648 ? B LYS 68 31 1 Y 1 C MET 649 ? B MET 69 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 GTP PG P N N 137 GTP O1G O N N 138 GTP O2G O N N 139 GTP O3G O N N 140 GTP O3B O N N 141 GTP PB P N N 142 GTP O1B O N N 143 GTP O2B O N N 144 GTP O3A O N N 145 GTP PA P N N 146 GTP O1A O N N 147 GTP O2A O N N 148 GTP "O5'" O N N 149 GTP "C5'" C N N 150 GTP "C4'" C N R 151 GTP "O4'" O N N 152 GTP "C3'" C N S 153 GTP "O3'" O N N 154 GTP "C2'" C N R 155 GTP "O2'" O N N 156 GTP "C1'" C N R 157 GTP N9 N Y N 158 GTP C8 C Y N 159 GTP N7 N Y N 160 GTP C5 C Y N 161 GTP C6 C N N 162 GTP O6 O N N 163 GTP N1 N N N 164 GTP C2 C N N 165 GTP N2 N N N 166 GTP N3 N N N 167 GTP C4 C Y N 168 GTP HOG2 H N N 169 GTP HOG3 H N N 170 GTP HOB2 H N N 171 GTP HOA2 H N N 172 GTP "H5'" H N N 173 GTP "H5''" H N N 174 GTP "H4'" H N N 175 GTP "H3'" H N N 176 GTP "HO3'" H N N 177 GTP "H2'" H N N 178 GTP "HO2'" H N N 179 GTP "H1'" H N N 180 GTP H8 H N N 181 GTP HN1 H N N 182 GTP HN21 H N N 183 GTP HN22 H N N 184 HIS N N N N 185 HIS CA C N S 186 HIS C C N N 187 HIS O O N N 188 HIS CB C N N 189 HIS CG C Y N 190 HIS ND1 N Y N 191 HIS CD2 C Y N 192 HIS CE1 C Y N 193 HIS NE2 N Y N 194 HIS OXT O N N 195 HIS H H N N 196 HIS H2 H N N 197 HIS HA H N N 198 HIS HB2 H N N 199 HIS HB3 H N N 200 HIS HD1 H N N 201 HIS HD2 H N N 202 HIS HE1 H N N 203 HIS HE2 H N N 204 HIS HXT H N N 205 HOH O O N N 206 HOH H1 H N N 207 HOH H2 H N N 208 ILE N N N N 209 ILE CA C N S 210 ILE C C N N 211 ILE O O N N 212 ILE CB C N S 213 ILE CG1 C N N 214 ILE CG2 C N N 215 ILE CD1 C N N 216 ILE OXT O N N 217 ILE H H N N 218 ILE H2 H N N 219 ILE HA H N N 220 ILE HB H N N 221 ILE HG12 H N N 222 ILE HG13 H N N 223 ILE HG21 H N N 224 ILE HG22 H N N 225 ILE HG23 H N N 226 ILE HD11 H N N 227 ILE HD12 H N N 228 ILE HD13 H N N 229 ILE HXT H N N 230 LEU N N N N 231 LEU CA C N S 232 LEU C C N N 233 LEU O O N N 234 LEU CB C N N 235 LEU CG C N N 236 LEU CD1 C N N 237 LEU CD2 C N N 238 LEU OXT O N N 239 LEU H H N N 240 LEU H2 H N N 241 LEU HA H N N 242 LEU HB2 H N N 243 LEU HB3 H N N 244 LEU HG H N N 245 LEU HD11 H N N 246 LEU HD12 H N N 247 LEU HD13 H N N 248 LEU HD21 H N N 249 LEU HD22 H N N 250 LEU HD23 H N N 251 LEU HXT H N N 252 LYS N N N N 253 LYS CA C N S 254 LYS C C N N 255 LYS O O N N 256 LYS CB C N N 257 LYS CG C N N 258 LYS CD C N N 259 LYS CE C N N 260 LYS NZ N N N 261 LYS OXT O N N 262 LYS H H N N 263 LYS H2 H N N 264 LYS HA H N N 265 LYS HB2 H N N 266 LYS HB3 H N N 267 LYS HG2 H N N 268 LYS HG3 H N N 269 LYS HD2 H N N 270 LYS HD3 H N N 271 LYS HE2 H N N 272 LYS HE3 H N N 273 LYS HZ1 H N N 274 LYS HZ2 H N N 275 LYS HZ3 H N N 276 LYS HXT H N N 277 MET N N N N 278 MET CA C N S 279 MET C C N N 280 MET O O N N 281 MET CB C N N 282 MET CG C N N 283 MET SD S N N 284 MET CE C N N 285 MET OXT O N N 286 MET H H N N 287 MET H2 H N N 288 MET HA H N N 289 MET HB2 H N N 290 MET HB3 H N N 291 MET HG2 H N N 292 MET HG3 H N N 293 MET HE1 H N N 294 MET HE2 H N N 295 MET HE3 H N N 296 MET HXT H N N 297 MG MG MG N N 298 PHE N N N N 299 PHE CA C N S 300 PHE C C N N 301 PHE O O N N 302 PHE CB C N N 303 PHE CG C Y N 304 PHE CD1 C Y N 305 PHE CD2 C Y N 306 PHE CE1 C Y N 307 PHE CE2 C Y N 308 PHE CZ C Y N 309 PHE OXT O N N 310 PHE H H N N 311 PHE H2 H N N 312 PHE HA H N N 313 PHE HB2 H N N 314 PHE HB3 H N N 315 PHE HD1 H N N 316 PHE HD2 H N N 317 PHE HE1 H N N 318 PHE HE2 H N N 319 PHE HZ H N N 320 PHE HXT H N N 321 PRO N N N N 322 PRO CA C N S 323 PRO C C N N 324 PRO O O N N 325 PRO CB C N N 326 PRO CG C N N 327 PRO CD C N N 328 PRO OXT O N N 329 PRO H H N N 330 PRO HA H N N 331 PRO HB2 H N N 332 PRO HB3 H N N 333 PRO HG2 H N N 334 PRO HG3 H N N 335 PRO HD2 H N N 336 PRO HD3 H N N 337 PRO HXT H N N 338 SER N N N N 339 SER CA C N S 340 SER C C N N 341 SER O O N N 342 SER CB C N N 343 SER OG O N N 344 SER OXT O N N 345 SER H H N N 346 SER H2 H N N 347 SER HA H N N 348 SER HB2 H N N 349 SER HB3 H N N 350 SER HG H N N 351 SER HXT H N N 352 THR N N N N 353 THR CA C N S 354 THR C C N N 355 THR O O N N 356 THR CB C N R 357 THR OG1 O N N 358 THR CG2 C N N 359 THR OXT O N N 360 THR H H N N 361 THR H2 H N N 362 THR HA H N N 363 THR HB H N N 364 THR HG1 H N N 365 THR HG21 H N N 366 THR HG22 H N N 367 THR HG23 H N N 368 THR HXT H N N 369 TRP N N N N 370 TRP CA C N S 371 TRP C C N N 372 TRP O O N N 373 TRP CB C N N 374 TRP CG C Y N 375 TRP CD1 C Y N 376 TRP CD2 C Y N 377 TRP NE1 N Y N 378 TRP CE2 C Y N 379 TRP CE3 C Y N 380 TRP CZ2 C Y N 381 TRP CZ3 C Y N 382 TRP CH2 C Y N 383 TRP OXT O N N 384 TRP H H N N 385 TRP H2 H N N 386 TRP HA H N N 387 TRP HB2 H N N 388 TRP HB3 H N N 389 TRP HD1 H N N 390 TRP HE1 H N N 391 TRP HE3 H N N 392 TRP HZ2 H N N 393 TRP HZ3 H N N 394 TRP HH2 H N N 395 TRP HXT H N N 396 TYR N N N N 397 TYR CA C N S 398 TYR C C N N 399 TYR O O N N 400 TYR CB C N N 401 TYR CG C Y N 402 TYR CD1 C Y N 403 TYR CD2 C Y N 404 TYR CE1 C Y N 405 TYR CE2 C Y N 406 TYR CZ C Y N 407 TYR OH O N N 408 TYR OXT O N N 409 TYR H H N N 410 TYR H2 H N N 411 TYR HA H N N 412 TYR HB2 H N N 413 TYR HB3 H N N 414 TYR HD1 H N N 415 TYR HD2 H N N 416 TYR HE1 H N N 417 TYR HE2 H N N 418 TYR HH H N N 419 TYR HXT H N N 420 VAL N N N N 421 VAL CA C N S 422 VAL C C N N 423 VAL O O N N 424 VAL CB C N N 425 VAL CG1 C N N 426 VAL CG2 C N N 427 VAL OXT O N N 428 VAL H H N N 429 VAL H2 H N N 430 VAL HA H N N 431 VAL HB H N N 432 VAL HG11 H N N 433 VAL HG12 H N N 434 VAL HG13 H N N 435 VAL HG21 H N N 436 VAL HG22 H N N 437 VAL HG23 H N N 438 VAL HXT H N N 439 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GTP PG O1G doub N N 129 GTP PG O2G sing N N 130 GTP PG O3G sing N N 131 GTP PG O3B sing N N 132 GTP O2G HOG2 sing N N 133 GTP O3G HOG3 sing N N 134 GTP O3B PB sing N N 135 GTP PB O1B doub N N 136 GTP PB O2B sing N N 137 GTP PB O3A sing N N 138 GTP O2B HOB2 sing N N 139 GTP O3A PA sing N N 140 GTP PA O1A doub N N 141 GTP PA O2A sing N N 142 GTP PA "O5'" sing N N 143 GTP O2A HOA2 sing N N 144 GTP "O5'" "C5'" sing N N 145 GTP "C5'" "C4'" sing N N 146 GTP "C5'" "H5'" sing N N 147 GTP "C5'" "H5''" sing N N 148 GTP "C4'" "O4'" sing N N 149 GTP "C4'" "C3'" sing N N 150 GTP "C4'" "H4'" sing N N 151 GTP "O4'" "C1'" sing N N 152 GTP "C3'" "O3'" sing N N 153 GTP "C3'" "C2'" sing N N 154 GTP "C3'" "H3'" sing N N 155 GTP "O3'" "HO3'" sing N N 156 GTP "C2'" "O2'" sing N N 157 GTP "C2'" "C1'" sing N N 158 GTP "C2'" "H2'" sing N N 159 GTP "O2'" "HO2'" sing N N 160 GTP "C1'" N9 sing N N 161 GTP "C1'" "H1'" sing N N 162 GTP N9 C8 sing Y N 163 GTP N9 C4 sing Y N 164 GTP C8 N7 doub Y N 165 GTP C8 H8 sing N N 166 GTP N7 C5 sing Y N 167 GTP C5 C6 sing N N 168 GTP C5 C4 doub Y N 169 GTP C6 O6 doub N N 170 GTP C6 N1 sing N N 171 GTP N1 C2 sing N N 172 GTP N1 HN1 sing N N 173 GTP C2 N2 sing N N 174 GTP C2 N3 doub N N 175 GTP N2 HN21 sing N N 176 GTP N2 HN22 sing N N 177 GTP N3 C4 sing N N 178 HIS N CA sing N N 179 HIS N H sing N N 180 HIS N H2 sing N N 181 HIS CA C sing N N 182 HIS CA CB sing N N 183 HIS CA HA sing N N 184 HIS C O doub N N 185 HIS C OXT sing N N 186 HIS CB CG sing N N 187 HIS CB HB2 sing N N 188 HIS CB HB3 sing N N 189 HIS CG ND1 sing Y N 190 HIS CG CD2 doub Y N 191 HIS ND1 CE1 doub Y N 192 HIS ND1 HD1 sing N N 193 HIS CD2 NE2 sing Y N 194 HIS CD2 HD2 sing N N 195 HIS CE1 NE2 sing Y N 196 HIS CE1 HE1 sing N N 197 HIS NE2 HE2 sing N N 198 HIS OXT HXT sing N N 199 HOH O H1 sing N N 200 HOH O H2 sing N N 201 ILE N CA sing N N 202 ILE N H sing N N 203 ILE N H2 sing N N 204 ILE CA C sing N N 205 ILE CA CB sing N N 206 ILE CA HA sing N N 207 ILE C O doub N N 208 ILE C OXT sing N N 209 ILE CB CG1 sing N N 210 ILE CB CG2 sing N N 211 ILE CB HB sing N N 212 ILE CG1 CD1 sing N N 213 ILE CG1 HG12 sing N N 214 ILE CG1 HG13 sing N N 215 ILE CG2 HG21 sing N N 216 ILE CG2 HG22 sing N N 217 ILE CG2 HG23 sing N N 218 ILE CD1 HD11 sing N N 219 ILE CD1 HD12 sing N N 220 ILE CD1 HD13 sing N N 221 ILE OXT HXT sing N N 222 LEU N CA sing N N 223 LEU N H sing N N 224 LEU N H2 sing N N 225 LEU CA C sing N N 226 LEU CA CB sing N N 227 LEU CA HA sing N N 228 LEU C O doub N N 229 LEU C OXT sing N N 230 LEU CB CG sing N N 231 LEU CB HB2 sing N N 232 LEU CB HB3 sing N N 233 LEU CG CD1 sing N N 234 LEU CG CD2 sing N N 235 LEU CG HG sing N N 236 LEU CD1 HD11 sing N N 237 LEU CD1 HD12 sing N N 238 LEU CD1 HD13 sing N N 239 LEU CD2 HD21 sing N N 240 LEU CD2 HD22 sing N N 241 LEU CD2 HD23 sing N N 242 LEU OXT HXT sing N N 243 LYS N CA sing N N 244 LYS N H sing N N 245 LYS N H2 sing N N 246 LYS CA C sing N N 247 LYS CA CB sing N N 248 LYS CA HA sing N N 249 LYS C O doub N N 250 LYS C OXT sing N N 251 LYS CB CG sing N N 252 LYS CB HB2 sing N N 253 LYS CB HB3 sing N N 254 LYS CG CD sing N N 255 LYS CG HG2 sing N N 256 LYS CG HG3 sing N N 257 LYS CD CE sing N N 258 LYS CD HD2 sing N N 259 LYS CD HD3 sing N N 260 LYS CE NZ sing N N 261 LYS CE HE2 sing N N 262 LYS CE HE3 sing N N 263 LYS NZ HZ1 sing N N 264 LYS NZ HZ2 sing N N 265 LYS NZ HZ3 sing N N 266 LYS OXT HXT sing N N 267 MET N CA sing N N 268 MET N H sing N N 269 MET N H2 sing N N 270 MET CA C sing N N 271 MET CA CB sing N N 272 MET CA HA sing N N 273 MET C O doub N N 274 MET C OXT sing N N 275 MET CB CG sing N N 276 MET CB HB2 sing N N 277 MET CB HB3 sing N N 278 MET CG SD sing N N 279 MET CG HG2 sing N N 280 MET CG HG3 sing N N 281 MET SD CE sing N N 282 MET CE HE1 sing N N 283 MET CE HE2 sing N N 284 MET CE HE3 sing N N 285 MET OXT HXT sing N N 286 PHE N CA sing N N 287 PHE N H sing N N 288 PHE N H2 sing N N 289 PHE CA C sing N N 290 PHE CA CB sing N N 291 PHE CA HA sing N N 292 PHE C O doub N N 293 PHE C OXT sing N N 294 PHE CB CG sing N N 295 PHE CB HB2 sing N N 296 PHE CB HB3 sing N N 297 PHE CG CD1 doub Y N 298 PHE CG CD2 sing Y N 299 PHE CD1 CE1 sing Y N 300 PHE CD1 HD1 sing N N 301 PHE CD2 CE2 doub Y N 302 PHE CD2 HD2 sing N N 303 PHE CE1 CZ doub Y N 304 PHE CE1 HE1 sing N N 305 PHE CE2 CZ sing Y N 306 PHE CE2 HE2 sing N N 307 PHE CZ HZ sing N N 308 PHE OXT HXT sing N N 309 PRO N CA sing N N 310 PRO N CD sing N N 311 PRO N H sing N N 312 PRO CA C sing N N 313 PRO CA CB sing N N 314 PRO CA HA sing N N 315 PRO C O doub N N 316 PRO C OXT sing N N 317 PRO CB CG sing N N 318 PRO CB HB2 sing N N 319 PRO CB HB3 sing N N 320 PRO CG CD sing N N 321 PRO CG HG2 sing N N 322 PRO CG HG3 sing N N 323 PRO CD HD2 sing N N 324 PRO CD HD3 sing N N 325 PRO OXT HXT sing N N 326 SER N CA sing N N 327 SER N H sing N N 328 SER N H2 sing N N 329 SER CA C sing N N 330 SER CA CB sing N N 331 SER CA HA sing N N 332 SER C O doub N N 333 SER C OXT sing N N 334 SER CB OG sing N N 335 SER CB HB2 sing N N 336 SER CB HB3 sing N N 337 SER OG HG sing N N 338 SER OXT HXT sing N N 339 THR N CA sing N N 340 THR N H sing N N 341 THR N H2 sing N N 342 THR CA C sing N N 343 THR CA CB sing N N 344 THR CA HA sing N N 345 THR C O doub N N 346 THR C OXT sing N N 347 THR CB OG1 sing N N 348 THR CB CG2 sing N N 349 THR CB HB sing N N 350 THR OG1 HG1 sing N N 351 THR CG2 HG21 sing N N 352 THR CG2 HG22 sing N N 353 THR CG2 HG23 sing N N 354 THR OXT HXT sing N N 355 TRP N CA sing N N 356 TRP N H sing N N 357 TRP N H2 sing N N 358 TRP CA C sing N N 359 TRP CA CB sing N N 360 TRP CA HA sing N N 361 TRP C O doub N N 362 TRP C OXT sing N N 363 TRP CB CG sing N N 364 TRP CB HB2 sing N N 365 TRP CB HB3 sing N N 366 TRP CG CD1 doub Y N 367 TRP CG CD2 sing Y N 368 TRP CD1 NE1 sing Y N 369 TRP CD1 HD1 sing N N 370 TRP CD2 CE2 doub Y N 371 TRP CD2 CE3 sing Y N 372 TRP NE1 CE2 sing Y N 373 TRP NE1 HE1 sing N N 374 TRP CE2 CZ2 sing Y N 375 TRP CE3 CZ3 doub Y N 376 TRP CE3 HE3 sing N N 377 TRP CZ2 CH2 doub Y N 378 TRP CZ2 HZ2 sing N N 379 TRP CZ3 CH2 sing Y N 380 TRP CZ3 HZ3 sing N N 381 TRP CH2 HH2 sing N N 382 TRP OXT HXT sing N N 383 TYR N CA sing N N 384 TYR N H sing N N 385 TYR N H2 sing N N 386 TYR CA C sing N N 387 TYR CA CB sing N N 388 TYR CA HA sing N N 389 TYR C O doub N N 390 TYR C OXT sing N N 391 TYR CB CG sing N N 392 TYR CB HB2 sing N N 393 TYR CB HB3 sing N N 394 TYR CG CD1 doub Y N 395 TYR CG CD2 sing Y N 396 TYR CD1 CE1 sing Y N 397 TYR CD1 HD1 sing N N 398 TYR CD2 CE2 doub Y N 399 TYR CD2 HD2 sing N N 400 TYR CE1 CZ doub Y N 401 TYR CE1 HE1 sing N N 402 TYR CE2 CZ sing Y N 403 TYR CE2 HE2 sing N N 404 TYR CZ OH sing N N 405 TYR OH HH sing N N 406 TYR OXT HXT sing N N 407 VAL N CA sing N N 408 VAL N H sing N N 409 VAL N H2 sing N N 410 VAL CA C sing N N 411 VAL CA CB sing N N 412 VAL CA HA sing N N 413 VAL C O doub N N 414 VAL C OXT sing N N 415 VAL CB CG1 sing N N 416 VAL CB CG2 sing N N 417 VAL CB HB sing N N 418 VAL CG1 HG11 sing N N 419 VAL CG1 HG12 sing N N 420 VAL CG1 HG13 sing N N 421 VAL CG2 HG21 sing N N 422 VAL CG2 HG22 sing N N 423 VAL CG2 HG23 sing N N 424 VAL OXT HXT sing N N 425 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4DRZ _pdbx_initial_refinement_model.details 'PDB ENTRY 4DRZ' # _atom_sites.entry_id 4D0G _atom_sites.fract_transf_matrix[1][1] 0.010431 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006746 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025768 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_