HEADER SIGNALING PROTEIN 29-APR-14 4D0P TITLE CRYSTAL STRUCTURE OF HUMAN CSN4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: COP9 SIGNALOSOME COMPLEX SUBUNIT 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-363; COMPND 5 SYNONYM: SGN4, SIGNALOSOME SUBUNIT 4, JAB1-CONTAINING SIGNALOSOME COMPND 6 SUBUNIT 4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 6 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HIGH FIVE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS SIGNALING PROTEIN, PCI EXPDTA X-RAY DIFFRACTION AUTHOR R.D.BUNKER,G.M.LINGARAJU,N.H.THOMA REVDAT 6 08-MAY-24 4D0P 1 REMARK LINK REVDAT 5 03-APR-19 4D0P 1 SOURCE REVDAT 4 06-MAR-19 4D0P 1 REMARK REVDAT 3 20-AUG-14 4D0P 1 JRNL REVDAT 2 30-JUL-14 4D0P 1 JRNL REVDAT 1 23-JUL-14 4D0P 0 JRNL AUTH G.M.LINGARAJU,R.D.BUNKER,S.CAVADINI,D.HESS,U.HASSIEPEN, JRNL AUTH 2 M.RENATUS,E.S.FISCHER,N.H.THOMA JRNL TITL CRYSTAL STRUCTURE OF THE COP9 SIGNALOSOME JRNL REF NATURE V. 512 161 2014 JRNL REFN ISSN 0028-0836 JRNL PMID 25043011 JRNL DOI 10.1038/NATURE13566 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.5 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 69593 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 3564 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.64 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.98 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 5138 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2145 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4920 REMARK 3 BIN R VALUE (WORKING SET) : 0.2143 REMARK 3 BIN FREE R VALUE : 0.2192 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.24 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 218 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2949 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 336 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.72370 REMARK 3 B22 (A**2) : -0.71940 REMARK 3 B33 (A**2) : 4.44310 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.48800 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.237 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.069 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.067 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.078 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.067 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6061 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 10962 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1391 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 88 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 915 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6061 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 2 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 404 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 8 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6677 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.98 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.05 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 13.32 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|-8 - 18} REMARK 3 ORIGIN FOR THE GROUP (A): -19.9205 6.4234 55.5244 REMARK 3 T TENSOR REMARK 3 T11: -0.2772 T22: 0.4966 REMARK 3 T33: -0.1892 T12: -0.1327 REMARK 3 T13: -0.0523 T23: -0.3254 REMARK 3 L TENSOR REMARK 3 L11: 10.1499 L22: 0.5517 REMARK 3 L33: -1.7275 L12: 2.1574 REMARK 3 L13: -3.1244 L23: -1.6920 REMARK 3 S TENSOR REMARK 3 S11: -0.3696 S12: 0.6210 S13: 0.0978 REMARK 3 S21: -0.0070 S22: 0.5060 S23: -0.1589 REMARK 3 S31: 0.1507 S32: 0.3080 S33: -0.1364 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|19 - 58} REMARK 3 ORIGIN FOR THE GROUP (A): -10.2168 11.2808 57.2824 REMARK 3 T TENSOR REMARK 3 T11: -0.3057 T22: 0.2819 REMARK 3 T33: -0.1775 T12: -0.0474 REMARK 3 T13: -0.0585 T23: -0.2091 REMARK 3 L TENSOR REMARK 3 L11: 7.8993 L22: 2.0820 REMARK 3 L33: 5.7616 L12: -0.7512 REMARK 3 L13: -1.0346 L23: 0.9422 REMARK 3 S TENSOR REMARK 3 S11: -0.2441 S12: 1.2080 S13: -0.0727 REMARK 3 S21: -0.1704 S22: -0.3541 S23: 0.2295 REMARK 3 S31: 0.0893 S32: -1.3656 S33: 0.5981 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|59 - 116} REMARK 3 ORIGIN FOR THE GROUP (A): -6.0354 14.2962 69.1575 REMARK 3 T TENSOR REMARK 3 T11: -0.1225 T22: 0.0156 REMARK 3 T33: -0.0705 T12: -0.0047 REMARK 3 T13: -0.0157 T23: -0.0610 REMARK 3 L TENSOR REMARK 3 L11: 2.7754 L22: 1.5331 REMARK 3 L33: 6.7653 L12: -1.2874 REMARK 3 L13: -1.8168 L23: 2.5145 REMARK 3 S TENSOR REMARK 3 S11: -0.1717 S12: 0.2992 S13: -0.1017 REMARK 3 S21: -0.0606 S22: -0.2517 S23: 0.2075 REMARK 3 S31: -0.1157 S32: -0.6950 S33: 0.4233 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|117 - 140} REMARK 3 ORIGIN FOR THE GROUP (A): -0.3907 16.3230 81.1286 REMARK 3 T TENSOR REMARK 3 T11: -0.0435 T22: -0.0652 REMARK 3 T33: -0.0866 T12: 0.0340 REMARK 3 T13: -0.0052 T23: -0.0264 REMARK 3 L TENSOR REMARK 3 L11: 4.8186 L22: 2.8657 REMARK 3 L33: 6.9981 L12: -1.3322 REMARK 3 L13: -1.1315 L23: 3.3876 REMARK 3 S TENSOR REMARK 3 S11: -0.0337 S12: 0.0542 S13: -0.2172 REMARK 3 S21: 0.0033 S22: -0.0538 S23: 0.1256 REMARK 3 S31: 0.2389 S32: -0.1083 S33: 0.0875 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|141 - 180} REMARK 3 ORIGIN FOR THE GROUP (A): 5.6218 21.9538 87.4059 REMARK 3 T TENSOR REMARK 3 T11: -0.0154 T22: -0.0249 REMARK 3 T33: -0.0407 T12: 0.0006 REMARK 3 T13: -0.0038 T23: -0.0323 REMARK 3 L TENSOR REMARK 3 L11: 1.3508 L22: 2.2145 REMARK 3 L33: 3.3501 L12: 0.2096 REMARK 3 L13: -0.0518 L23: 0.9737 REMARK 3 S TENSOR REMARK 3 S11: 0.0164 S12: 0.0930 S13: -0.1250 REMARK 3 S21: -0.0846 S22: 0.0556 S23: -0.1368 REMARK 3 S31: -0.1355 S32: 0.1727 S33: -0.0720 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {A|181 - 218} REMARK 3 ORIGIN FOR THE GROUP (A): 9.9626 32.6874 93.8427 REMARK 3 T TENSOR REMARK 3 T11: -0.0193 T22: -0.0748 REMARK 3 T33: -0.0559 T12: 0.0081 REMARK 3 T13: 0.0103 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 2.4531 L22: 2.1249 REMARK 3 L33: 2.5632 L12: 1.7227 REMARK 3 L13: -1.4634 L23: -1.0469 REMARK 3 S TENSOR REMARK 3 S11: -0.1103 S12: 0.2045 S13: -0.1444 REMARK 3 S21: -0.1398 S22: 0.0612 S23: -0.1371 REMARK 3 S31: 0.2448 S32: 0.0217 S33: 0.0491 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: {A|219 - 268} REMARK 3 ORIGIN FOR THE GROUP (A): 9.9873 43.8118 103.8637 REMARK 3 T TENSOR REMARK 3 T11: 0.0130 T22: -0.0659 REMARK 3 T33: -0.0357 T12: -0.0194 REMARK 3 T13: 0.0119 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 1.6344 L22: 1.0566 REMARK 3 L33: 4.7554 L12: 0.0823 REMARK 3 L13: -0.8913 L23: 0.6440 REMARK 3 S TENSOR REMARK 3 S11: 0.1409 S12: -0.0739 S13: 0.1772 REMARK 3 S21: -0.0118 S22: -0.0001 S23: -0.0233 REMARK 3 S31: -0.3908 S32: 0.2084 S33: -0.1408 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: {A|269 - 315} REMARK 3 ORIGIN FOR THE GROUP (A): -0.6564 40.9426 112.3003 REMARK 3 T TENSOR REMARK 3 T11: -0.0661 T22: -0.0726 REMARK 3 T33: -0.0485 T12: 0.0084 REMARK 3 T13: 0.0562 T23: -0.0192 REMARK 3 L TENSOR REMARK 3 L11: 1.3748 L22: 1.8822 REMARK 3 L33: 5.5047 L12: 0.7866 REMARK 3 L13: 0.9275 L23: 1.0998 REMARK 3 S TENSOR REMARK 3 S11: 0.1845 S12: -0.1614 S13: 0.1904 REMARK 3 S21: 0.3097 S22: -0.1561 S23: 0.2566 REMARK 3 S31: 0.0143 S32: -0.4681 S33: -0.0285 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: {A|316 - 344} REMARK 3 ORIGIN FOR THE GROUP (A): 0.1034 36.5604 126.8592 REMARK 3 T TENSOR REMARK 3 T11: 0.0987 T22: -0.0632 REMARK 3 T33: -0.0404 T12: -0.0928 REMARK 3 T13: 0.0592 T23: -0.0533 REMARK 3 L TENSOR REMARK 3 L11: 4.0016 L22: 0.6455 REMARK 3 L33: 2.2320 L12: 1.2940 REMARK 3 L13: 0.7251 L23: 0.1960 REMARK 3 S TENSOR REMARK 3 S11: 0.1003 S12: -0.1042 S13: 0.2241 REMARK 3 S21: 0.6169 S22: -0.2138 S23: 0.1770 REMARK 3 S31: 0.6493 S32: -0.3649 S33: 0.1136 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: {A|345 - 362} REMARK 3 ORIGIN FOR THE GROUP (A): 6.0786 31.7170 130.1022 REMARK 3 T TENSOR REMARK 3 T11: 0.2597 T22: -0.0989 REMARK 3 T33: -0.0690 T12: -0.0404 REMARK 3 T13: -0.0046 T23: 0.0157 REMARK 3 L TENSOR REMARK 3 L11: 2.8970 L22: 6.8727 REMARK 3 L33: 2.2841 L12: 0.8354 REMARK 3 L13: 2.7073 L23: 3.5662 REMARK 3 S TENSOR REMARK 3 S11: 0.1660 S12: -0.5213 S13: -0.2480 REMARK 3 S21: 0.8264 S22: 0.0053 S23: -0.2823 REMARK 3 S31: 0.3164 S32: 0.0152 S33: -0.1713 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT SETUP. REMARK 3 RESIDUE TYPES WITHOUT CCP4 ATOM TYPE IN LIBRARY=NA CL. NUMBER OF REMARK 3 ATOMS WITH PROPER CCP4 ATOM TYPE=6343. NUMBER WITH APPROX REMARK 3 DEFAULT CCP4 ATOM TYPE=0. NUMBER TREATED BY BAD NON-BONDED REMARK 3 CONTACTS=13. RESIDUES -24 TO -9 OF THE FUSION TAG AND RESIDUE REMARK 3 363 THE C-TERMINUS ARE DISORDERED REMARK 4 REMARK 4 4D0P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-APR-14. REMARK 100 THE DEPOSITION ID IS D_1290060483. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : DYNAMICALLY BENDABLE MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69613 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 32.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.50 REMARK 200 R MERGE FOR SHELL (I) : 1.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: AUTOSHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 0.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16 MG/ML PROTEIN IN 50 MM HEPES PH REMARK 280 7.4, 200 MM NACL, 2 MM DTT WAS MIXED EQUALLY WITH 100 MM HEPES REMARK 280 PH 7.5, 4.3 M NACL. CRYSTALS WERE GROWN BY VAPOR DIFFUSION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.76500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 ALA A -22 REMARK 465 SER A -21 REMARK 465 TRP A -20 REMARK 465 SER A -19 REMARK 465 HIS A -18 REMARK 465 PRO A -17 REMARK 465 GLN A -16 REMARK 465 PHE A -15 REMARK 465 GLU A -14 REMARK 465 LYS A -13 REMARK 465 VAL A -12 REMARK 465 ASP A -11 REMARK 465 GLU A -10 REMARK 465 GLU A -9 REMARK 465 THR A 363 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A -4 CG CD OE1 NE2 REMARK 470 GLN A 28 CG CD OE1 NE2 REMARK 470 GLU A 90 CG CD OE1 OE2 REMARK 470 GLU A 322 CG CD OE1 OE2 REMARK 470 GLU A 362 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH11 ARG A 193 CL CL A 506 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 119 71.42 -100.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2008 DISTANCE = 5.91 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 500 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 313 O REMARK 620 2 TYR A 316 O 96.2 REMARK 620 3 HOH A2297 O 113.8 98.1 REMARK 620 4 HOH A2299 O 149.3 88.9 95.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 509 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 340 OG REMARK 620 2 SER A 340 O 88.5 REMARK 620 3 THR A 344 OG1 164.9 79.5 REMARK 620 4 HOH A2324 O 93.1 89.4 96.0 REMARK 620 5 HOH A2325 O 91.6 93.6 80.1 174.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 511 REMARK 999 REMARK 999 SEQUENCE REMARK 999 CRYSTALLIZED WITH AN N-TERMINAL STREP(II) FUSION TAG DBREF 4D0P A 1 363 UNP Q9BT78 CSN4_HUMAN 1 363 SEQADV 4D0P MET A -23 UNP Q9BT78 EXPRESSION TAG SEQADV 4D0P ALA A -22 UNP Q9BT78 EXPRESSION TAG SEQADV 4D0P SER A -21 UNP Q9BT78 EXPRESSION TAG SEQADV 4D0P TRP A -20 UNP Q9BT78 EXPRESSION TAG SEQADV 4D0P SER A -19 UNP Q9BT78 EXPRESSION TAG SEQADV 4D0P HIS A -18 UNP Q9BT78 EXPRESSION TAG SEQADV 4D0P PRO A -17 UNP Q9BT78 EXPRESSION TAG SEQADV 4D0P GLN A -16 UNP Q9BT78 EXPRESSION TAG SEQADV 4D0P PHE A -15 UNP Q9BT78 EXPRESSION TAG SEQADV 4D0P GLU A -14 UNP Q9BT78 EXPRESSION TAG SEQADV 4D0P LYS A -13 UNP Q9BT78 EXPRESSION TAG SEQADV 4D0P VAL A -12 UNP Q9BT78 EXPRESSION TAG SEQADV 4D0P ASP A -11 UNP Q9BT78 EXPRESSION TAG SEQADV 4D0P GLU A -10 UNP Q9BT78 EXPRESSION TAG SEQADV 4D0P GLU A -9 UNP Q9BT78 EXPRESSION TAG SEQADV 4D0P ASN A -8 UNP Q9BT78 EXPRESSION TAG SEQADV 4D0P LEU A -7 UNP Q9BT78 EXPRESSION TAG SEQADV 4D0P TYR A -6 UNP Q9BT78 EXPRESSION TAG SEQADV 4D0P PHE A -5 UNP Q9BT78 EXPRESSION TAG SEQADV 4D0P GLN A -4 UNP Q9BT78 EXPRESSION TAG SEQADV 4D0P GLY A -3 UNP Q9BT78 EXPRESSION TAG SEQADV 4D0P GLY A -2 UNP Q9BT78 EXPRESSION TAG SEQADV 4D0P GLY A -1 UNP Q9BT78 EXPRESSION TAG SEQADV 4D0P ARG A 0 UNP Q9BT78 EXPRESSION TAG SEQRES 1 A 387 MET ALA SER TRP SER HIS PRO GLN PHE GLU LYS VAL ASP SEQRES 2 A 387 GLU GLU ASN LEU TYR PHE GLN GLY GLY GLY ARG MET ALA SEQRES 3 A 387 ALA ALA VAL ARG GLN ASP LEU ALA GLN LEU MET ASN SER SEQRES 4 A 387 SER GLY SER HIS LYS ASP LEU ALA GLY LYS TYR ARG GLN SEQRES 5 A 387 ILE LEU GLU LYS ALA ILE GLN LEU SER GLY ALA GLU GLN SEQRES 6 A 387 LEU GLU ALA LEU LYS ALA PHE VAL GLU ALA MET VAL ASN SEQRES 7 A 387 GLU ASN VAL SER LEU VAL ILE SER ARG GLN LEU LEU THR SEQRES 8 A 387 ASP PHE CYS THR HIS LEU PRO ASN LEU PRO ASP SER THR SEQRES 9 A 387 ALA LYS GLU ILE TYR HIS PHE THR LEU GLU LYS ILE GLN SEQRES 10 A 387 PRO ARG VAL ILE SER PHE GLU GLU GLN VAL ALA SER ILE SEQRES 11 A 387 ARG GLN HIS LEU ALA SER ILE TYR GLU LYS GLU GLU ASP SEQRES 12 A 387 TRP ARG ASN ALA ALA GLN VAL LEU VAL GLY ILE PRO LEU SEQRES 13 A 387 GLU THR GLY GLN LYS GLN TYR ASN VAL ASP TYR LYS LEU SEQRES 14 A 387 GLU THR TYR LEU LYS ILE ALA ARG LEU TYR LEU GLU ASP SEQRES 15 A 387 ASP ASP PRO VAL GLN ALA GLU ALA TYR ILE ASN ARG ALA SEQRES 16 A 387 SER LEU LEU GLN ASN GLU SER THR ASN GLU GLN LEU GLN SEQRES 17 A 387 ILE HIS TYR LYS VAL CYS TYR ALA ARG VAL LEU ASP TYR SEQRES 18 A 387 ARG ARG LYS PHE ILE GLU ALA ALA GLN ARG TYR ASN GLU SEQRES 19 A 387 LEU SER TYR LYS THR ILE VAL HIS GLU SER GLU ARG LEU SEQRES 20 A 387 GLU ALA LEU LYS HIS ALA LEU HIS CYS THR ILE LEU ALA SEQRES 21 A 387 SER ALA GLY GLN GLN ARG SER ARG MET LEU ALA THR LEU SEQRES 22 A 387 PHE LYS ASP GLU ARG CYS GLN GLN LEU ALA ALA TYR GLY SEQRES 23 A 387 ILE LEU GLU LYS MET TYR LEU ASP ARG ILE ILE ARG GLY SEQRES 24 A 387 ASN GLN LEU GLN GLU PHE ALA ALA MET LEU MET PRO HIS SEQRES 25 A 387 GLN LYS ALA THR THR ALA ASP GLY SER SER ILE LEU ASP SEQRES 26 A 387 ARG ALA VAL ILE GLU HIS ASN LEU LEU SER ALA SER LYS SEQRES 27 A 387 LEU TYR ASN ASN ILE THR PHE GLU GLU LEU GLY ALA LEU SEQRES 28 A 387 LEU GLU ILE PRO ALA ALA LYS ALA GLU LYS ILE ALA SER SEQRES 29 A 387 GLN MET ILE THR GLU GLY ARG MET ASN GLY PHE ILE ASP SEQRES 30 A 387 GLN ILE ASP GLY ILE VAL HIS PHE GLU THR HET NA A 500 1 HET CL A 501 1 HET CL A 502 1 HET CL A 503 1 HET CL A 505 1 HET CL A 506 1 HET EDO A 507 10 HET CL A 508 1 HET NA A 509 1 HET CL A 510 1 HET CL A 511 1 HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NA 2(NA 1+) FORMUL 3 CL 8(CL 1-) FORMUL 8 EDO C2 H6 O2 FORMUL 13 HOH *336(H2 O) HELIX 1 1 GLY A -1 MET A 13 1 15 HELIX 2 2 SER A 18 GLN A 35 1 18 HELIX 3 3 GLY A 38 ASN A 54 1 17 HELIX 4 4 SER A 58 LEU A 73 1 16 HELIX 5 5 PRO A 74 LEU A 76 5 3 HELIX 6 6 PRO A 77 GLN A 93 1 17 HELIX 7 7 PRO A 94 SER A 98 5 5 HELIX 8 8 PHE A 99 GLU A 117 1 19 HELIX 9 9 ASP A 119 GLY A 129 1 11 HELIX 10 10 ASN A 140 ASP A 158 1 19 HELIX 11 11 ASP A 160 LEU A 173 1 14 HELIX 12 12 LEU A 174 SER A 178 5 5 HELIX 13 13 ASN A 180 ARG A 198 1 19 HELIX 14 14 LYS A 200 SER A 212 1 13 HELIX 15 15 HIS A 218 ALA A 236 1 19 HELIX 16 16 GLY A 239 ASP A 252 1 14 HELIX 17 17 GLU A 253 ALA A 259 5 7 HELIX 18 18 ALA A 260 LEU A 269 1 10 HELIX 19 19 ARG A 274 GLN A 277 5 4 HELIX 20 20 LEU A 278 MET A 284 1 7 HELIX 21 21 MET A 286 ALA A 291 5 6 HELIX 22 22 SER A 298 TYR A 316 1 19 HELIX 23 23 PHE A 321 GLU A 329 1 9 HELIX 24 24 PRO A 331 GLU A 345 1 15 SHEET 1 AA 3 ASN A 318 THR A 320 0 SHEET 2 AA 3 ILE A 358 PHE A 361 -1 O VAL A 359 N ILE A 319 SHEET 3 AA 3 GLY A 350 ASP A 353 -1 O PHE A 351 N HIS A 360 LINK O SER A 313 NA NA A 500 1555 1555 2.32 LINK O TYR A 316 NA NA A 500 1555 1555 2.35 LINK OG SER A 340 NA NA A 509 1555 1555 2.24 LINK O SER A 340 NA NA A 509 1555 1555 2.50 LINK OG1 THR A 344 NA NA A 509 1555 1555 2.44 LINK NA NA A 500 O HOH A2297 1555 1555 2.24 LINK NA NA A 500 O HOH A2299 1555 1555 2.43 LINK NA NA A 509 O HOH A2324 1555 1555 2.28 LINK NA NA A 509 O HOH A2325 1555 1555 2.39 SITE 1 AC1 5 SER A 313 TYR A 316 PHE A 361 HOH A2297 SITE 2 AC1 5 HOH A2299 SITE 1 AC2 2 LYS A 214 THR A 215 SITE 1 AC3 4 ILE A 202 ALA A 236 SER A 237 HOH A2202 SITE 1 AC4 2 TYR A 167 ARG A 170 SITE 1 AC5 2 ARG A 222 ARG A 254 SITE 1 AC6 3 ARG A 153 ARG A 193 HOH A2154 SITE 1 AC7 7 ARG A 6 ALA A 10 MET A 13 ALA A 51 SITE 2 AC7 7 ASN A 54 HOH A2015 HOH A2041 SITE 1 AC8 4 HIS A 231 ALA A 259 ALA A 260 CL A 510 SITE 1 AC9 4 SER A 340 THR A 344 HOH A2324 HOH A2325 SITE 1 BC1 2 ALA A 259 CL A 508 SITE 1 BC2 3 THR A 67 SER A 105 HOH A2105 CRYST1 56.660 63.530 75.800 90.00 101.69 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017649 0.000000 0.003652 0.00000 SCALE2 0.000000 0.015741 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013472 0.00000