HEADER HYDROLASE 05-MAY-14 4D1Y TITLE CRYSTAL STRUCTURE OF A PUTATIVE PROTEASE FROM BACTEROIDES TITLE 2 THETAIOTAOMICRON. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE PROTEASE I; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 STRAIN: VPI-5482; SOURCE 5 ATCC: 29148; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET-28; SOURCE 11 OTHER_DETAILS: GENE GAT1 OF B. THETAIOTAOMICRON KEYWDS HYDROLASE, FLAVOPROTEIN, FLAVIN, RBF, FMN, FAD, STORAGE PROTEIN, KEYWDS 2 NUCLEOTIDE-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR T.KNAUS,M.K.UHL,S.MONSCHEIN,S.MORATTI,K.GRUBER,P.MACHEROUX REVDAT 3 20-DEC-23 4D1Y 1 REMARK LINK REVDAT 2 14-JAN-15 4D1Y 1 JRNL REVDAT 1 22-OCT-14 4D1Y 0 JRNL AUTH T.KNAUS,M.K.UHL,S.MONSCHEIN,S.MORATTI,K.GRUBER,P.MACHEROUX JRNL TITL STRUCTURE AND STABILITY OF AN UNUSUAL ZINC-BINDING PROTEIN JRNL TITL 2 FROM BACTEROIDES THETAIOTAOMICRON. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1844 2298 2014 JRNL REFN ISSN 0006-3002 JRNL PMID 25263158 JRNL DOI 10.1016/J.BBAPAP.2014.08.008 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 10476 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 486 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 58.2003 - 3.7498 0.99 3396 158 0.1798 0.2159 REMARK 3 2 3.7498 - 2.9763 0.99 3323 158 0.2366 0.2887 REMARK 3 3 2.9763 - 2.6001 0.98 3271 170 0.2863 0.3402 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.83 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 2802 REMARK 3 ANGLE : 0.593 3786 REMARK 3 CHIRALITY : 0.021 424 REMARK 3 PLANARITY : 0.004 482 REMARK 3 DIHEDRAL : 9.881 1002 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:107) REMARK 3 ORIGIN FOR THE GROUP (A): -22.1863 -4.2292 10.3188 REMARK 3 T TENSOR REMARK 3 T11: 0.2346 T22: 0.3546 REMARK 3 T33: 0.2670 T12: 0.0355 REMARK 3 T13: -0.0240 T23: -0.0525 REMARK 3 L TENSOR REMARK 3 L11: 3.4288 L22: 4.1337 REMARK 3 L33: 3.5886 L12: 0.9986 REMARK 3 L13: 0.5922 L23: 0.1218 REMARK 3 S TENSOR REMARK 3 S11: 0.1105 S12: 0.4163 S13: -0.0239 REMARK 3 S21: -0.2177 S22: -0.1266 S23: -0.1421 REMARK 3 S31: 0.0496 S32: 0.6290 S33: 0.0198 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 108:162) REMARK 3 ORIGIN FOR THE GROUP (A): -16.8819 -9.4032 25.1568 REMARK 3 T TENSOR REMARK 3 T11: 0.2550 T22: 0.3492 REMARK 3 T33: 0.2490 T12: -0.0120 REMARK 3 T13: -0.0267 T23: -0.0337 REMARK 3 L TENSOR REMARK 3 L11: 6.7781 L22: 4.2910 REMARK 3 L33: 5.7858 L12: -1.4051 REMARK 3 L13: 1.4839 L23: 0.0177 REMARK 3 S TENSOR REMARK 3 S11: -0.0321 S12: -0.2598 S13: -0.1345 REMARK 3 S21: 0.2158 S22: 0.1711 S23: -0.2750 REMARK 3 S31: 0.1767 S32: 0.5106 S33: -0.1288 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 163:175) REMARK 3 ORIGIN FOR THE GROUP (A): -26.9352 2.8786 25.9403 REMARK 3 T TENSOR REMARK 3 T11: 0.4512 T22: 0.5986 REMARK 3 T33: 0.5016 T12: 0.0787 REMARK 3 T13: 0.0065 T23: -0.0555 REMARK 3 L TENSOR REMARK 3 L11: 2.4332 L22: 2.8787 REMARK 3 L33: 8.3502 L12: 2.2417 REMARK 3 L13: -1.4690 L23: -3.7577 REMARK 3 S TENSOR REMARK 3 S11: 0.1034 S12: 0.0471 S13: 0.4865 REMARK 3 S21: 1.1314 S22: -0.1248 S23: 0.3199 REMARK 3 S31: -1.2676 S32: -0.9506 S33: 0.2075 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 1:49) REMARK 3 ORIGIN FOR THE GROUP (A): -43.0159 -10.3240 11.7198 REMARK 3 T TENSOR REMARK 3 T11: 0.1577 T22: 0.2536 REMARK 3 T33: 0.3644 T12: 0.0293 REMARK 3 T13: -0.0186 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 4.3562 L22: 5.4156 REMARK 3 L33: 6.0898 L12: 1.0716 REMARK 3 L13: -0.5643 L23: -1.0135 REMARK 3 S TENSOR REMARK 3 S11: -0.1223 S12: 0.2457 S13: -0.0870 REMARK 3 S21: -0.0292 S22: 0.1439 S23: 0.1615 REMARK 3 S31: 0.0047 S32: -0.1465 S33: -0.0503 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 50:79) REMARK 3 ORIGIN FOR THE GROUP (A): -50.4360 -10.0926 8.9586 REMARK 3 T TENSOR REMARK 3 T11: 0.2679 T22: 0.3942 REMARK 3 T33: 0.4509 T12: 0.0258 REMARK 3 T13: -0.0332 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 6.3182 L22: 1.1125 REMARK 3 L33: 5.4875 L12: -1.6253 REMARK 3 L13: -2.7217 L23: -1.0409 REMARK 3 S TENSOR REMARK 3 S11: -0.0518 S12: 0.4448 S13: -0.3628 REMARK 3 S21: -0.2169 S22: 0.0635 S23: 0.1583 REMARK 3 S31: -0.1401 S32: -0.8679 S33: -0.0078 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 80:175) REMARK 3 ORIGIN FOR THE GROUP (A): -53.9275 -5.4150 21.0862 REMARK 3 T TENSOR REMARK 3 T11: 0.2617 T22: 0.6267 REMARK 3 T33: 0.6621 T12: 0.0238 REMARK 3 T13: 0.0197 T23: -0.0416 REMARK 3 L TENSOR REMARK 3 L11: 4.4737 L22: 2.7030 REMARK 3 L33: 3.3566 L12: -0.4158 REMARK 3 L13: -0.7672 L23: -0.1243 REMARK 3 S TENSOR REMARK 3 S11: -0.0817 S12: -0.3371 S13: 0.4357 REMARK 3 S21: 0.1410 S22: -0.0076 S23: 0.5545 REMARK 3 S31: -0.1716 S32: -0.7917 S33: 0.0695 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4D1Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1290060504. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : MIRROR WITH 50 NM PT-COATING REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10483 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 68.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -8.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3CNE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED FROM 11.5% REMARK 280 (W/V) PEG 4000, 92 MM CALCIUM CHLORIDE, 50 MM TRISHCL, PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 61.30050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.42550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 61.30050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.42550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -86.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -24 REMARK 465 GLY A -23 REMARK 465 SER A -22 REMARK 465 ASP A -21 REMARK 465 LYS A -20 REMARK 465 ILE A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 SER A -12 REMARK 465 SER A -11 REMARK 465 GLY A -10 REMARK 465 GLU A -9 REMARK 465 ASN A -8 REMARK 465 LEU A -7 REMARK 465 TYR A -6 REMARK 465 PHE A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 HIS A -2 REMARK 465 MET A -1 REMARK 465 ILE A 0 REMARK 465 MET B -24 REMARK 465 GLY B -23 REMARK 465 SER B -22 REMARK 465 ASP B -21 REMARK 465 LYS B -20 REMARK 465 ILE B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 SER B -12 REMARK 465 SER B -11 REMARK 465 GLY B -10 REMARK 465 GLU B -9 REMARK 465 ASN B -8 REMARK 465 LEU B -7 REMARK 465 TYR B -6 REMARK 465 PHE B -5 REMARK 465 GLN B -4 REMARK 465 GLY B -3 REMARK 465 HIS B -2 REMARK 465 MET B -1 REMARK 465 ILE B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 111 -97.23 54.82 REMARK 500 CYS B 111 -99.82 56.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2012 DISTANCE = 6.26 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1177 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 74 SG REMARK 620 2 CYS A 111 SG 105.2 REMARK 620 3 HOH A2023 O 124.7 107.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1176 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 74 SG REMARK 620 2 CYS B 111 SG 107.9 REMARK 620 3 HOH B2016 O 118.0 115.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RBF A 1176 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1177 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1176 DBREF 4D1Y A 1 175 UNP Q8A8A4 Q8A8A4_BACTN 1 175 DBREF 4D1Y B 1 175 UNP Q8A8A4 Q8A8A4_BACTN 1 175 SEQADV 4D1Y MET A -24 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y GLY A -23 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y SER A -22 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y ASP A -21 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y LYS A -20 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y ILE A -19 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y HIS A -18 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y HIS A -17 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y HIS A -16 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y HIS A -15 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y HIS A -14 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y HIS A -13 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y SER A -12 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y SER A -11 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y GLY A -10 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y GLU A -9 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y ASN A -8 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y LEU A -7 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y TYR A -6 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y PHE A -5 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y GLN A -4 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y GLY A -3 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y HIS A -2 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y MET A -1 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y ILE A 0 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y MET B -24 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y GLY B -23 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y SER B -22 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y ASP B -21 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y LYS B -20 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y ILE B -19 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y HIS B -18 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y HIS B -17 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y HIS B -16 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y HIS B -15 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y HIS B -14 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y HIS B -13 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y SER B -12 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y SER B -11 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y GLY B -10 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y GLU B -9 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y ASN B -8 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y LEU B -7 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y TYR B -6 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y PHE B -5 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y GLN B -4 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y GLY B -3 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y HIS B -2 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y MET B -1 UNP Q8A8A4 EXPRESSION TAG SEQADV 4D1Y ILE B 0 UNP Q8A8A4 EXPRESSION TAG SEQRES 1 A 200 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS SER SEQRES 2 A 200 SER GLY GLU ASN LEU TYR PHE GLN GLY HIS MET ILE MET SEQRES 3 A 200 ALA LYS LYS VAL ALA VAL LEU ALA VAL ASN PRO VAL ASN SEQRES 4 A 200 GLY CYS GLY LEU PHE GLN TYR LEU GLU ALA PHE PHE GLU SEQRES 5 A 200 ASN GLY ILE SER TYR LYS VAL PHE ALA VAL SER ASP THR SEQRES 6 A 200 LYS GLU ILE LYS THR ASN SER GLY MET VAL LEU ILE VAL SEQRES 7 A 200 ASP ASP VAL ILE ALA ASN LEU LYS GLY HIS GLU ASP GLU SEQRES 8 A 200 PHE ASP ALA LEU VAL PHE SER CYS GLY ASP ALA VAL PRO SEQRES 9 A 200 VAL PHE GLN GLN TYR ALA ASN GLN PRO TYR ASN VAL ASP SEQRES 10 A 200 LEU MET GLU VAL ILE LYS THR PHE GLY GLU LYS GLY LYS SEQRES 11 A 200 MET MET ILE GLY HIS CYS ALA GLY ALA MET MET PHE ASP SEQRES 12 A 200 PHE THR GLY ILE THR LYS GLY LYS LYS VAL ALA VAL HIS SEQRES 13 A 200 PRO LEU ALA LYS PRO ALA ILE GLN ASN GLY ILE ALA THR SEQRES 14 A 200 ASP GLU LYS SER GLU ILE ASP GLY ASN PHE PHE THR ALA SEQRES 15 A 200 GLN ASP GLU ASN THR ILE TRP THR MET LEU PRO LYS VAL SEQRES 16 A 200 ILE GLU ALA LEU LYS SEQRES 1 B 200 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS SER SEQRES 2 B 200 SER GLY GLU ASN LEU TYR PHE GLN GLY HIS MET ILE MET SEQRES 3 B 200 ALA LYS LYS VAL ALA VAL LEU ALA VAL ASN PRO VAL ASN SEQRES 4 B 200 GLY CYS GLY LEU PHE GLN TYR LEU GLU ALA PHE PHE GLU SEQRES 5 B 200 ASN GLY ILE SER TYR LYS VAL PHE ALA VAL SER ASP THR SEQRES 6 B 200 LYS GLU ILE LYS THR ASN SER GLY MET VAL LEU ILE VAL SEQRES 7 B 200 ASP ASP VAL ILE ALA ASN LEU LYS GLY HIS GLU ASP GLU SEQRES 8 B 200 PHE ASP ALA LEU VAL PHE SER CYS GLY ASP ALA VAL PRO SEQRES 9 B 200 VAL PHE GLN GLN TYR ALA ASN GLN PRO TYR ASN VAL ASP SEQRES 10 B 200 LEU MET GLU VAL ILE LYS THR PHE GLY GLU LYS GLY LYS SEQRES 11 B 200 MET MET ILE GLY HIS CYS ALA GLY ALA MET MET PHE ASP SEQRES 12 B 200 PHE THR GLY ILE THR LYS GLY LYS LYS VAL ALA VAL HIS SEQRES 13 B 200 PRO LEU ALA LYS PRO ALA ILE GLN ASN GLY ILE ALA THR SEQRES 14 B 200 ASP GLU LYS SER GLU ILE ASP GLY ASN PHE PHE THR ALA SEQRES 15 B 200 GLN ASP GLU ASN THR ILE TRP THR MET LEU PRO LYS VAL SEQRES 16 B 200 ILE GLU ALA LEU LYS HET RBF A1176 54 HET ZN A1177 1 HET ZN B1176 1 HETNAM RBF RIBOFLAVIN HETNAM ZN ZINC ION HETSYN RBF RIBOFLAVINE; VITAMIN B2 FORMUL 3 RBF C17 H20 N4 O6 FORMUL 4 ZN 2(ZN 2+) FORMUL 6 HOH *64(H2 O) HELIX 1 1 ASN A 14 ASN A 28 1 15 HELIX 2 2 ALA A 58 LEU A 60 5 3 HELIX 3 3 HIS A 63 PHE A 67 5 5 HELIX 4 4 ALA A 77 PHE A 81 5 5 HELIX 5 5 GLN A 87 LYS A 103 1 17 HELIX 6 6 ALA A 112 PHE A 119 1 8 HELIX 7 7 ALA A 134 ILE A 138 5 5 HELIX 8 8 THR A 162 THR A 165 5 4 HELIX 9 9 MET A 166 LYS A 175 1 10 HELIX 10 10 ASN B 14 ASN B 28 1 15 HELIX 11 11 ALA B 58 LYS B 61 5 4 HELIX 12 12 HIS B 63 PHE B 67 5 5 HELIX 13 13 ALA B 77 PHE B 81 5 5 HELIX 14 14 GLN B 87 LYS B 103 1 17 HELIX 15 15 ALA B 112 PHE B 119 1 8 HELIX 16 16 ALA B 134 ILE B 138 5 5 HELIX 17 17 THR B 162 THR B 165 5 4 HELIX 18 18 MET B 166 LYS B 175 1 10 SHEET 1 AA 7 ASP A 55 VAL A 56 0 SHEET 2 AA 7 TYR A 32 ALA A 36 1 O VAL A 34 N ASP A 55 SHEET 3 AA 7 VAL A 5 ALA A 9 1 O VAL A 5 N LYS A 33 SHEET 4 AA 7 ALA A 69 SER A 73 1 O ALA A 69 N ALA A 6 SHEET 5 AA 7 MET A 106 HIS A 110 1 O MET A 106 N LEU A 70 SHEET 6 AA 7 PHE A 154 ALA A 157 1 O PHE A 155 N GLY A 109 SHEET 7 AA 7 SER A 148 ASP A 151 -1 O GLU A 149 N THR A 156 SHEET 1 AB 4 GLU A 42 LYS A 44 0 SHEET 2 AB 4 VAL A 50 ILE A 52 -1 O LEU A 51 N ILE A 43 SHEET 3 AB 4 VAL B 50 ILE B 52 -1 O VAL B 50 N ILE A 52 SHEET 4 AB 4 GLU B 42 LYS B 44 -1 O ILE B 43 N LEU B 51 SHEET 1 AC 2 LYS A 127 ALA A 129 0 SHEET 2 AC 2 ILE A 142 THR A 144 1 O ILE A 142 N VAL A 128 SHEET 1 BA 7 ASP B 55 VAL B 56 0 SHEET 2 BA 7 SER B 31 ALA B 36 1 O VAL B 34 N ASP B 55 SHEET 3 BA 7 LYS B 4 ALA B 9 1 O VAL B 5 N LYS B 33 SHEET 4 BA 7 ALA B 69 SER B 73 1 O ALA B 69 N ALA B 6 SHEET 5 BA 7 MET B 106 HIS B 110 1 O MET B 106 N LEU B 70 SHEET 6 BA 7 PHE B 154 ALA B 157 1 O PHE B 155 N GLY B 109 SHEET 7 BA 7 SER B 148 ASP B 151 -1 O GLU B 149 N THR B 156 SHEET 1 BB 2 LYS B 127 ALA B 129 0 SHEET 2 BB 2 ILE B 142 THR B 144 1 O ILE B 142 N VAL B 128 LINK SG CYS A 74 ZN ZN A1177 1555 1555 2.04 LINK SG CYS A 111 ZN ZN A1177 1555 1555 2.33 LINK ZN ZN A1177 O HOH A2023 1555 1555 2.38 LINK SG CYS B 74 ZN ZN B1176 1555 1555 2.09 LINK SG CYS B 111 ZN ZN B1176 1555 1555 2.20 LINK ZN ZN B1176 O HOH B2016 1555 1555 2.35 CISPEP 1 ASN A 11 PRO A 12 0 2.68 CISPEP 2 ASN B 11 PRO B 12 0 1.90 SITE 1 AC1 3 ASN A 161 TRP A 164 TRP B 164 SITE 1 AC2 4 CYS A 74 CYS A 111 HOH A2023 HOH A2025 SITE 1 AC3 4 CYS B 74 CYS B 111 HOH B2015 HOH B2016 CRYST1 122.601 40.851 71.645 90.00 108.34 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008157 0.000000 0.002704 0.00000 SCALE2 0.000000 0.024479 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014705 0.00000