HEADER HYDROLASE 09-MAY-14 4D2I TITLE CRYSTAL STRUCTURE OF THE HERA HEXAMERIC DNA TRANSLOCASE FROM TITLE 2 SULFOLOBUS SOLFATARICUS BOUND TO AMP-PNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: HERA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 273057; SOURCE 4 STRAIN: P2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET-30A KEYWDS HYDROLASE, NURA, HELICASE, TRANSLOCASE, DNA, MRE11, RAD50, HOMOLOGOUS KEYWDS 2 RECOMBINATION EXPDTA X-RAY DIFFRACTION AUTHOR N.J.RZECHORZEK,J.K.BLACKWOOD,S.M.BRAY,J.D.MAMAN,L.PELLEGRINI, AUTHOR 2 N.P.ROBINSON REVDAT 2 08-MAY-24 4D2I 1 REMARK LINK REVDAT 1 03-DEC-14 4D2I 0 JRNL AUTH N.J.RZECHORZEK,J.K.BLACKWOOD,S.M.BRAY,J.D.MAMAN, JRNL AUTH 2 L.PELLEGRINI,N.P.ROBINSON JRNL TITL STRUCTURE OF THE HEXAMERIC HERA ATPASE REVEALS A MECHANISM JRNL TITL 2 OF TRANSLOCATION-COUPLED DNA-END PROCESSING IN ARCHAEA JRNL REF NAT.COMMUN. V. 5 5506 2014 JRNL REFN ESSN 2041-1723 JRNL PMID 25420454 JRNL DOI 10.1038/NCOMMS6506 REMARK 2 REMARK 2 RESOLUTION. 2.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 26775 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1330 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.7400 - 6.1179 0.94 2483 135 0.2218 0.2458 REMARK 3 2 6.1179 - 4.8575 0.95 2515 110 0.2175 0.2286 REMARK 3 3 4.8575 - 4.2439 0.95 2533 131 0.1871 0.2352 REMARK 3 4 4.2439 - 3.8561 0.95 2522 131 0.1925 0.2278 REMARK 3 5 3.8561 - 3.5798 0.97 2568 134 0.2073 0.2492 REMARK 3 6 3.5798 - 3.3688 0.98 2554 145 0.2089 0.2717 REMARK 3 7 3.3688 - 3.2001 0.98 2581 139 0.2232 0.2990 REMARK 3 8 3.2001 - 3.0608 0.97 2571 136 0.2258 0.2831 REMARK 3 9 3.0608 - 2.9430 0.98 2601 137 0.2316 0.3065 REMARK 3 10 2.9430 - 2.8415 0.94 2517 132 0.2352 0.3070 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 7465 REMARK 3 ANGLE : 0.706 10077 REMARK 3 CHIRALITY : 0.030 1178 REMARK 3 PLANARITY : 0.004 1280 REMARK 3 DIHEDRAL : 12.272 2854 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4D2I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1290060587. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26776 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.840 REMARK 200 RESOLUTION RANGE LOW (A) : 47.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.0600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.33000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.720 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED FROM 20% V/V REMARK 280 GLYCEROL ETHOXYLATE, 12.5% V/V TETRAHYDROFURAN, 100 MM TRIS-HCL REMARK 280 PH 8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 75.10500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 43.36189 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.84667 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 75.10500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 43.36189 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 46.84667 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 75.10500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 43.36189 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.84667 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 86.72378 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 93.69333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 86.72378 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 93.69333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 86.72378 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 93.69333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 44420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 94620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -133.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 261 REMARK 465 THR A 262 REMARK 465 GLN A 263 REMARK 465 GLY A 264 REMARK 465 ASN A 265 REMARK 465 SER A 266 REMARK 465 ASP A 267 REMARK 465 LYS A 268 REMARK 465 LYS A 269 REMARK 465 SER A 270 REMARK 465 SER A 271 REMARK 465 ALA A 272 REMARK 465 GLU A 477 REMARK 465 TRP A 478 REMARK 465 LYS A 479 REMARK 465 LYS A 480 REMARK 465 VAL A 481 REMARK 465 ALA A 482 REMARK 465 ALA A 483 REMARK 465 SER A 484 REMARK 465 GLU A 485 REMARK 465 LYS A 486 REMARK 465 ILE A 487 REMARK 465 ALA A 488 REMARK 465 LYS A 489 REMARK 465 GLY A 490 REMARK 465 PHE A 491 REMARK 465 ALA A 492 REMARK 465 ASP A 493 REMARK 465 PHE A 494 REMARK 465 GLY A 495 REMARK 465 THR A 496 REMARK 465 GLU A 497 REMARK 465 ILE A 498 REMARK 465 GLY A 499 REMARK 465 ASP A 500 REMARK 465 ALA B 239 REMARK 465 ALA B 240 REMARK 465 GLY B 241 REMARK 465 GLN B 242 REMARK 465 ILE B 243 REMARK 465 PRO B 244 REMARK 465 PHE B 245 REMARK 465 SER B 246 REMARK 465 THR B 247 REMARK 465 GLU B 261 REMARK 465 THR B 262 REMARK 465 GLN B 263 REMARK 465 GLY B 264 REMARK 465 ASN B 265 REMARK 465 SER B 266 REMARK 465 ASP B 267 REMARK 465 LYS B 268 REMARK 465 LYS B 269 REMARK 465 SER B 270 REMARK 465 TRP B 478 REMARK 465 LYS B 479 REMARK 465 LYS B 480 REMARK 465 VAL B 481 REMARK 465 ALA B 482 REMARK 465 ALA B 483 REMARK 465 SER B 484 REMARK 465 GLU B 485 REMARK 465 LYS B 486 REMARK 465 ILE B 487 REMARK 465 ALA B 488 REMARK 465 LYS B 489 REMARK 465 GLY B 490 REMARK 465 PHE B 491 REMARK 465 ALA B 492 REMARK 465 ASP B 493 REMARK 465 PHE B 494 REMARK 465 GLY B 495 REMARK 465 THR B 496 REMARK 465 GLU B 497 REMARK 465 ILE B 498 REMARK 465 GLY B 499 REMARK 465 ASP B 500 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 450 O HOH B 2041 3555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 11 -165.68 -112.10 REMARK 500 GLN A 13 11.45 -143.92 REMARK 500 ASP A 34 -130.08 54.45 REMARK 500 THR A 43 -82.26 -110.47 REMARK 500 PHE A 68 -159.31 -85.80 REMARK 500 ASN A 88 59.42 -99.09 REMARK 500 ASN A 130 57.39 -101.28 REMARK 500 HIS A 143 155.73 74.00 REMARK 500 LEU A 248 -35.48 -132.28 REMARK 500 LEU A 411 -157.00 -93.00 REMARK 500 THR B 11 -166.98 -113.96 REMARK 500 GLN B 13 11.23 -144.52 REMARK 500 ASP B 34 -128.34 54.03 REMARK 500 THR B 43 -81.87 -110.03 REMARK 500 LEU B 52 67.28 -100.26 REMARK 500 PHE B 68 -158.51 -85.58 REMARK 500 ASN B 88 58.86 -98.41 REMARK 500 ASN B 130 57.40 -101.20 REMARK 500 HIS B 143 156.46 73.78 REMARK 500 ARG B 213 -110.64 -142.29 REMARK 500 LEU B 411 -154.45 -92.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1478 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 155 OG REMARK 620 2 ANP A1477 O2B 86.9 REMARK 620 3 ANP A1477 O2G 155.8 69.4 REMARK 620 4 HOH A2029 O 79.7 75.9 98.5 REMARK 620 5 HOH A2030 O 104.7 91.6 72.2 166.7 REMARK 620 6 HOH A2031 O 103.4 158.6 100.7 87.3 103.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1479 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 155 OG REMARK 620 2 ANP B1478 O2G 153.6 REMARK 620 3 ANP B1478 O2B 90.8 70.8 REMARK 620 4 HOH B2012 O 92.8 104.9 87.9 REMARK 620 5 HOH B2013 O 86.9 75.4 92.2 179.7 REMARK 620 6 HOH B2014 O 93.2 104.2 174.6 95.5 84.4 REMARK 620 N 1 2 3 4 5 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 1477 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP B 1478 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1478 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1479 DBREF 4D2I A 1 500 UNP Q97WG8 Q97WG8_SULSO 1 500 DBREF 4D2I B 1 500 UNP Q97WG8 Q97WG8_SULSO 1 500 SEQADV 4D2I LEU A 51 UNP Q97WG8 MET 51 ENGINEERED MUTATION SEQADV 4D2I LEU A 82 UNP Q97WG8 MET 82 ENGINEERED MUTATION SEQADV 4D2I ALA A 236 UNP Q97WG8 GLU 236 ENGINEERED MUTATION SEQADV 4D2I ALA A 237 UNP Q97WG8 LYS 237 ENGINEERED MUTATION SEQADV 4D2I ALA A 239 UNP Q97WG8 LYS 239 ENGINEERED MUTATION SEQADV 4D2I ALA A 240 UNP Q97WG8 GLU 240 ENGINEERED MUTATION SEQADV 4D2I ALA A 257 UNP Q97WG8 LYS 257 ENGINEERED MUTATION SEQADV 4D2I ALA A 259 UNP Q97WG8 GLU 259 ENGINEERED MUTATION SEQADV 4D2I ALA A 482 UNP Q97WG8 GLU 482 ENGINEERED MUTATION SEQADV 4D2I ALA A 483 UNP Q97WG8 GLU 483 ENGINEERED MUTATION SEQADV 4D2I LEU B 51 UNP Q97WG8 MET 51 ENGINEERED MUTATION SEQADV 4D2I LEU B 82 UNP Q97WG8 MET 82 ENGINEERED MUTATION SEQADV 4D2I ALA B 236 UNP Q97WG8 GLU 236 ENGINEERED MUTATION SEQADV 4D2I ALA B 237 UNP Q97WG8 LYS 237 ENGINEERED MUTATION SEQADV 4D2I ALA B 239 UNP Q97WG8 LYS 239 ENGINEERED MUTATION SEQADV 4D2I ALA B 240 UNP Q97WG8 GLU 240 ENGINEERED MUTATION SEQADV 4D2I ALA B 257 UNP Q97WG8 LYS 257 ENGINEERED MUTATION SEQADV 4D2I ALA B 259 UNP Q97WG8 GLU 259 ENGINEERED MUTATION SEQADV 4D2I ALA B 482 UNP Q97WG8 GLU 482 ENGINEERED MUTATION SEQADV 4D2I ALA B 483 UNP Q97WG8 GLU 483 ENGINEERED MUTATION SEQRES 1 A 500 MET ILE ILE GLY TYR VAL ILE GLY GLN ALA THR THR GLN SEQRES 2 A 500 GLU ALA LEU ILE LEU ALA GLU ARG PRO VAL ARG LEU GLY SEQRES 3 A 500 THR TYR VAL VAL LEU GLU TYR ASP ASN VAL LYS ALA LEU SEQRES 4 A 500 GLY LEU ILE THR ASN VAL THR ARG GLY SER PRO LEU LEU SEQRES 5 A 500 ASP ASP ASN MET ASN ASP ILE GLU ILE VAL GLN ARG LEU SEQRES 6 A 500 LYS GLN PHE ASN ASN SER ILE PRO VAL TYR THR LYS ALA SEQRES 7 A 500 LYS VAL LYS LEU LEU CYS ASP MET ASN ASN HIS PHE LEU SEQRES 8 A 500 MET PRO ASP ILE PRO PRO PHE ALA GLY THR PRO ALA ARG SEQRES 9 A 500 GLU ALA GLU ASP GLU GLU LEU LYS SER ILE TYR SER GLN SEQRES 10 A 500 ASP GLY GLN ILE ARG ILE GLY SER LEU ILE GLY LYS ASN SEQRES 11 A 500 VAL GLU VAL LYS LEU ASN ILE ASN SER PHE ALA ARG HIS SEQRES 12 A 500 LEU ALA ILE LEU ALA ALA THR GLY SER GLY LYS SER ASN SEQRES 13 A 500 THR VAL ALA VAL LEU SER GLN ARG ILE SER GLU LEU GLY SEQRES 14 A 500 GLY SER VAL LEU ILE PHE ASP TYR HIS GLY GLU TYR TYR SEQRES 15 A 500 ASP SER ASP ILE LYS ASN LEU ASN ARG ILE GLU PRO LYS SEQRES 16 A 500 LEU ASN PRO LEU TYR MET THR PRO ARG GLU PHE SER THR SEQRES 17 A 500 LEU LEU GLU ILE ARG GLU ASN ALA ILE ILE GLN TYR ARG SEQRES 18 A 500 ILE LEU ARG ARG ALA PHE ILE LYS VAL THR ASN GLY ILE SEQRES 19 A 500 ARG ALA ALA LEU ALA ALA GLY GLN ILE PRO PHE SER THR SEQRES 20 A 500 LEU ASN SER GLN PHE TYR GLU LEU MET ALA ASP ALA LEU SEQRES 21 A 500 GLU THR GLN GLY ASN SER ASP LYS LYS SER SER ALA LYS SEQRES 22 A 500 ASP GLU VAL LEU ASN LYS PHE GLU GLU PHE MET ASP ARG SEQRES 23 A 500 TYR SER ASN VAL ILE ASP LEU THR SER SER ASP ILE ILE SEQRES 24 A 500 GLU LYS VAL LYS ARG GLY LYS VAL ASN VAL VAL SER LEU SEQRES 25 A 500 THR GLN LEU ASP GLU ASP SER MET ASP ALA VAL VAL SER SEQRES 26 A 500 HIS TYR LEU ARG ARG ILE LEU ASP SER ARG LYS ASP PHE SEQRES 27 A 500 LYS ARG SER LYS ASN SER GLY LEU LYS PHE PRO ILE ILE SEQRES 28 A 500 ALA VAL ILE GLU GLU ALA HIS VAL PHE LEU SER LYS ASN SEQRES 29 A 500 GLU ASN THR LEU THR LYS TYR TRP ALA SER ARG ILE ALA SEQRES 30 A 500 ARG GLU GLY ARG LYS PHE GLY VAL GLY LEU THR ILE VAL SEQRES 31 A 500 SER GLN ARG PRO LYS GLY LEU ASP GLU ASN ILE LEU SER SEQRES 32 A 500 GLN MET THR ASN LYS ILE ILE LEU LYS ILE ILE GLU PRO SEQRES 33 A 500 THR ASP LYS LYS TYR ILE LEU GLU SER SER ASP ASN LEU SEQRES 34 A 500 SER GLU ASP LEU ALA GLU GLN LEU SER SER LEU ASP VAL SEQRES 35 A 500 GLY GLU ALA ILE ILE ILE GLY LYS ILE VAL LYS LEU PRO SEQRES 36 A 500 ALA VAL VAL LYS ILE ASP MET PHE GLU GLY LYS LEU LEU SEQRES 37 A 500 GLY SER ASP PRO ASP MET ILE GLY GLU TRP LYS LYS VAL SEQRES 38 A 500 ALA ALA SER GLU LYS ILE ALA LYS GLY PHE ALA ASP PHE SEQRES 39 A 500 GLY THR GLU ILE GLY ASP SEQRES 1 B 500 MET ILE ILE GLY TYR VAL ILE GLY GLN ALA THR THR GLN SEQRES 2 B 500 GLU ALA LEU ILE LEU ALA GLU ARG PRO VAL ARG LEU GLY SEQRES 3 B 500 THR TYR VAL VAL LEU GLU TYR ASP ASN VAL LYS ALA LEU SEQRES 4 B 500 GLY LEU ILE THR ASN VAL THR ARG GLY SER PRO LEU LEU SEQRES 5 B 500 ASP ASP ASN MET ASN ASP ILE GLU ILE VAL GLN ARG LEU SEQRES 6 B 500 LYS GLN PHE ASN ASN SER ILE PRO VAL TYR THR LYS ALA SEQRES 7 B 500 LYS VAL LYS LEU LEU CYS ASP MET ASN ASN HIS PHE LEU SEQRES 8 B 500 MET PRO ASP ILE PRO PRO PHE ALA GLY THR PRO ALA ARG SEQRES 9 B 500 GLU ALA GLU ASP GLU GLU LEU LYS SER ILE TYR SER GLN SEQRES 10 B 500 ASP GLY GLN ILE ARG ILE GLY SER LEU ILE GLY LYS ASN SEQRES 11 B 500 VAL GLU VAL LYS LEU ASN ILE ASN SER PHE ALA ARG HIS SEQRES 12 B 500 LEU ALA ILE LEU ALA ALA THR GLY SER GLY LYS SER ASN SEQRES 13 B 500 THR VAL ALA VAL LEU SER GLN ARG ILE SER GLU LEU GLY SEQRES 14 B 500 GLY SER VAL LEU ILE PHE ASP TYR HIS GLY GLU TYR TYR SEQRES 15 B 500 ASP SER ASP ILE LYS ASN LEU ASN ARG ILE GLU PRO LYS SEQRES 16 B 500 LEU ASN PRO LEU TYR MET THR PRO ARG GLU PHE SER THR SEQRES 17 B 500 LEU LEU GLU ILE ARG GLU ASN ALA ILE ILE GLN TYR ARG SEQRES 18 B 500 ILE LEU ARG ARG ALA PHE ILE LYS VAL THR ASN GLY ILE SEQRES 19 B 500 ARG ALA ALA LEU ALA ALA GLY GLN ILE PRO PHE SER THR SEQRES 20 B 500 LEU ASN SER GLN PHE TYR GLU LEU MET ALA ASP ALA LEU SEQRES 21 B 500 GLU THR GLN GLY ASN SER ASP LYS LYS SER SER ALA LYS SEQRES 22 B 500 ASP GLU VAL LEU ASN LYS PHE GLU GLU PHE MET ASP ARG SEQRES 23 B 500 TYR SER ASN VAL ILE ASP LEU THR SER SER ASP ILE ILE SEQRES 24 B 500 GLU LYS VAL LYS ARG GLY LYS VAL ASN VAL VAL SER LEU SEQRES 25 B 500 THR GLN LEU ASP GLU ASP SER MET ASP ALA VAL VAL SER SEQRES 26 B 500 HIS TYR LEU ARG ARG ILE LEU ASP SER ARG LYS ASP PHE SEQRES 27 B 500 LYS ARG SER LYS ASN SER GLY LEU LYS PHE PRO ILE ILE SEQRES 28 B 500 ALA VAL ILE GLU GLU ALA HIS VAL PHE LEU SER LYS ASN SEQRES 29 B 500 GLU ASN THR LEU THR LYS TYR TRP ALA SER ARG ILE ALA SEQRES 30 B 500 ARG GLU GLY ARG LYS PHE GLY VAL GLY LEU THR ILE VAL SEQRES 31 B 500 SER GLN ARG PRO LYS GLY LEU ASP GLU ASN ILE LEU SER SEQRES 32 B 500 GLN MET THR ASN LYS ILE ILE LEU LYS ILE ILE GLU PRO SEQRES 33 B 500 THR ASP LYS LYS TYR ILE LEU GLU SER SER ASP ASN LEU SEQRES 34 B 500 SER GLU ASP LEU ALA GLU GLN LEU SER SER LEU ASP VAL SEQRES 35 B 500 GLY GLU ALA ILE ILE ILE GLY LYS ILE VAL LYS LEU PRO SEQRES 36 B 500 ALA VAL VAL LYS ILE ASP MET PHE GLU GLY LYS LEU LEU SEQRES 37 B 500 GLY SER ASP PRO ASP MET ILE GLY GLU TRP LYS LYS VAL SEQRES 38 B 500 ALA ALA SER GLU LYS ILE ALA LYS GLY PHE ALA ASP PHE SEQRES 39 B 500 GLY THR GLU ILE GLY ASP HET ANP A1477 31 HET MG A1478 1 HET ANP B1478 31 HET MG B1479 1 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MG MAGNESIUM ION FORMUL 3 ANP 2(C10 H17 N6 O12 P3) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *113(H2 O) HELIX 1 1 ASP A 58 PHE A 68 1 11 HELIX 2 2 GLU A 107 SER A 116 1 10 HELIX 3 3 ILE A 137 ARG A 142 5 6 HELIX 4 4 GLY A 153 LEU A 168 1 16 HELIX 5 5 ASN A 197 MET A 201 5 5 HELIX 6 6 THR A 202 LEU A 210 1 9 HELIX 7 7 ALA A 216 GLY A 241 1 26 HELIX 8 8 PRO A 244 THR A 247 5 4 HELIX 9 9 LEU A 248 LEU A 260 1 13 HELIX 10 10 LYS A 273 TYR A 287 1 15 HELIX 11 11 ASP A 297 VAL A 302 1 6 HELIX 12 12 ASP A 316 LYS A 342 1 27 HELIX 13 13 GLU A 356 LEU A 361 1 6 HELIX 14 14 THR A 367 GLY A 380 1 14 HELIX 15 15 ARG A 381 PHE A 383 5 3 HELIX 16 16 ARG A 393 LEU A 397 5 5 HELIX 17 17 ASP A 398 SER A 403 1 6 HELIX 18 18 GLU A 415 GLU A 424 1 10 HELIX 19 19 SER A 430 GLU A 435 1 6 HELIX 20 20 GLN A 436 LEU A 440 5 5 HELIX 21 21 ASP B 58 PHE B 68 1 11 HELIX 22 22 GLU B 107 SER B 116 1 10 HELIX 23 23 ILE B 137 ARG B 142 5 6 HELIX 24 24 GLY B 153 LEU B 168 1 16 HELIX 25 25 ASN B 197 MET B 201 5 5 HELIX 26 26 THR B 202 LEU B 210 1 9 HELIX 27 27 ALA B 216 LEU B 238 1 23 HELIX 28 28 LEU B 248 LEU B 260 1 13 HELIX 29 29 SER B 271 TYR B 287 1 17 HELIX 30 30 ASP B 297 VAL B 302 1 6 HELIX 31 31 ASP B 316 LYS B 342 1 27 HELIX 32 32 GLU B 356 PHE B 360 5 5 HELIX 33 33 THR B 367 GLY B 380 1 14 HELIX 34 34 ARG B 381 PHE B 383 5 3 HELIX 35 35 ARG B 393 LEU B 397 5 5 HELIX 36 36 ASP B 398 SER B 403 1 6 HELIX 37 37 GLU B 415 GLU B 424 1 10 HELIX 38 38 SER B 430 GLU B 435 1 6 HELIX 39 39 GLN B 436 LEU B 440 5 5 SHEET 1 AA 7 ILE A 2 ILE A 7 0 SHEET 2 AA 7 PRO A 102 GLU A 105 -1 O ALA A 103 N ILE A 3 SHEET 3 AA 7 TYR A 28 TYR A 33 -1 O VAL A 30 N ARG A 104 SHEET 4 AA 7 VAL A 36 GLY A 48 -1 O VAL A 36 N TYR A 33 SHEET 5 AA 7 TYR A 75 ASP A 85 -1 O TYR A 75 N GLY A 48 SHEET 6 AA 7 GLU A 14 ALA A 19 -1 O ALA A 15 N VAL A 80 SHEET 7 AA 7 ILE A 2 ILE A 7 -1 O TYR A 5 N LEU A 18 SHEET 1 AB11 GLU A 132 LEU A 135 0 SHEET 2 AB11 ILE A 121 LEU A 126 -1 O ILE A 121 N LEU A 135 SHEET 3 AB11 ALA A 456 ILE A 460 -1 O LYS A 459 N SER A 125 SHEET 4 AB11 GLU A 444 ILE A 448 -1 O ALA A 445 N VAL A 458 SHEET 5 AB11 ASN A 407 ILE A 410 -1 O LYS A 408 N ILE A 448 SHEET 6 AB11 LEU A 144 LEU A 147 1 O ALA A 145 N ILE A 409 SHEET 7 AB11 VAL A 385 SER A 391 1 O LEU A 387 N LEU A 144 SHEET 8 AB11 ILE A 350 ILE A 354 1 O ILE A 350 N GLY A 386 SHEET 9 AB11 VAL A 172 ASP A 176 1 O LEU A 173 N VAL A 353 SHEET 10 AB11 VAL A 307 SER A 311 1 O ASN A 308 N ILE A 174 SHEET 11 AB11 LEU A 189 ILE A 192 1 O ASN A 190 N VAL A 309 SHEET 1 BA 7 ILE B 2 ALA B 10 0 SHEET 2 BA 7 PRO B 102 GLU B 105 -1 O ALA B 103 N ILE B 3 SHEET 3 BA 7 TYR B 28 TYR B 33 -1 O VAL B 30 N ARG B 104 SHEET 4 BA 7 VAL B 36 GLY B 48 -1 O VAL B 36 N TYR B 33 SHEET 5 BA 7 TYR B 75 ASP B 85 -1 O TYR B 75 N GLY B 48 SHEET 6 BA 7 GLU B 14 ALA B 19 -1 O ALA B 15 N VAL B 80 SHEET 7 BA 7 ILE B 2 ALA B 10 -1 O TYR B 5 N LEU B 18 SHEET 1 BB11 GLU B 132 LEU B 135 0 SHEET 2 BB11 ILE B 121 LEU B 126 -1 O ILE B 121 N LEU B 135 SHEET 3 BB11 ALA B 456 ILE B 460 -1 O LYS B 459 N SER B 125 SHEET 4 BB11 GLU B 444 ILE B 448 -1 O ALA B 445 N VAL B 458 SHEET 5 BB11 ASN B 407 ILE B 410 -1 O LYS B 408 N ILE B 448 SHEET 6 BB11 LEU B 144 LEU B 147 1 O ALA B 145 N ILE B 409 SHEET 7 BB11 VAL B 385 SER B 391 1 O LEU B 387 N LEU B 144 SHEET 8 BB11 ILE B 350 ILE B 354 1 O ILE B 350 N GLY B 386 SHEET 9 BB11 VAL B 172 ASP B 176 1 O LEU B 173 N VAL B 353 SHEET 10 BB11 VAL B 307 SER B 311 1 O ASN B 308 N ILE B 174 SHEET 11 BB11 LEU B 189 ILE B 192 1 O ASN B 190 N VAL B 309 LINK OG SER A 155 MG MG A1478 1555 1555 2.07 LINK O2B ANP A1477 MG MG A1478 1555 1555 2.21 LINK O2G ANP A1477 MG MG A1478 1555 1555 2.15 LINK MG MG A1478 O HOH A2029 1555 1555 2.10 LINK MG MG A1478 O HOH A2030 1555 1555 2.04 LINK MG MG A1478 O HOH A2031 1555 1555 2.04 LINK OG SER B 155 MG MG B1479 1555 1555 2.22 LINK O2G ANP B1478 MG MG B1479 1555 1555 2.00 LINK O2B ANP B1478 MG MG B1479 1555 1555 2.37 LINK MG MG B1479 O HOH B2012 1555 1555 2.19 LINK MG MG B1479 O HOH B2013 1555 1555 2.10 LINK MG MG B1479 O HOH B2014 1555 1555 2.18 SITE 1 AC1 18 THR A 150 GLY A 151 SER A 152 GLY A 153 SITE 2 AC1 18 LYS A 154 SER A 155 ASN A 156 VAL A 442 SITE 3 AC1 18 GLY A 443 LYS A 459 ILE A 460 ASP A 461 SITE 4 AC1 18 MET A 462 MG A1478 HOH A2027 HOH A2029 SITE 5 AC1 18 HOH A2030 ARG B 142 SITE 1 AC2 17 ARG A 142 SER A 246 HOH A2022 THR B 150 SITE 2 AC2 17 GLY B 151 SER B 152 GLY B 153 LYS B 154 SITE 3 AC2 17 SER B 155 ASN B 156 VAL B 442 GLY B 443 SITE 4 AC2 17 ILE B 460 MET B 462 MG B1479 HOH B2012 SITE 5 AC2 17 HOH B2013 SITE 1 AC3 6 SER A 155 GLU A 180 ANP A1477 HOH A2029 SITE 2 AC3 6 HOH A2030 HOH A2031 SITE 1 AC4 5 SER B 155 ANP B1478 HOH B2012 HOH B2013 SITE 2 AC4 5 HOH B2014 CRYST1 150.210 150.210 140.540 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006657 0.003844 0.000000 0.00000 SCALE2 0.000000 0.007687 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007115 0.00000