HEADER OXIDOREDUCTASE 23-OCT-14 4D3T TITLE STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX WITH TITLE 2 N-{3-[(1S)-2-(3-{(Z)-[AMINO(THIOPHEN-2-YL)METHYLIDENE]AMINO}PHENOXY)- TITLE 3 1-HYDROXYETHYL]PHENYL}THIOPHENE-2-CARBOXIMIDAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NITRIC OXIDE SYNTHASE OXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NOSOXY-LIKE PROTEIN; COMPND 5 EC: 1.14.13.165; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 ATCC: 23857; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS OXIDOREDUCTASE, INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR J.K.HOLDEN,T.L.POULOS REVDAT 5 20-DEC-23 4D3T 1 REMARK REVDAT 4 06-FEB-19 4D3T 1 REMARK REVDAT 3 30-JAN-19 4D3T 1 REMARK REVDAT 2 04-FEB-15 4D3T 1 JRNL REVDAT 1 14-JAN-15 4D3T 0 JRNL AUTH J.K.HOLDEN,S.KANG,S.A.HOLLINGSWORTH,H.LI,N.LIM,S.CHEN, JRNL AUTH 2 H.HUANG,F.XUE,W.TANG,R.B.SILVERMAN,T.L.POULOS JRNL TITL STRUCTURE-BASED DESIGN OF BACTERIAL NITRIC OXIDE SYNTHASE JRNL TITL 2 INHIBITORS. JRNL REF J.MED.CHEM. V. 58 994 2015 JRNL REFN ISSN 0022-2623 JRNL PMID 25522110 JRNL DOI 10.1021/JM501723P REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 68910 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3514 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.0355 - 4.5296 0.98 2829 158 0.1607 0.1876 REMARK 3 2 4.5296 - 3.5962 0.96 2655 143 0.1463 0.1658 REMARK 3 3 3.5962 - 3.1419 0.98 2677 137 0.1678 0.1840 REMARK 3 4 3.1419 - 2.8548 0.99 2676 131 0.1695 0.1911 REMARK 3 5 2.8548 - 2.6502 0.97 2642 120 0.1727 0.2088 REMARK 3 6 2.6502 - 2.4940 0.98 2626 142 0.1607 0.1850 REMARK 3 7 2.4940 - 2.3691 0.98 2599 172 0.1676 0.1941 REMARK 3 8 2.3691 - 2.2660 0.98 2625 153 0.1662 0.1990 REMARK 3 9 2.2660 - 2.1788 0.97 2576 139 0.1889 0.1740 REMARK 3 10 2.1788 - 2.1036 0.97 2596 131 0.1858 0.1981 REMARK 3 11 2.1036 - 2.0378 0.97 2630 126 0.1973 0.2256 REMARK 3 12 2.0378 - 1.9796 0.98 2620 135 0.1772 0.2005 REMARK 3 13 1.9796 - 1.9275 0.99 2614 148 0.1954 0.2289 REMARK 3 14 1.9275 - 1.8805 0.98 2592 139 0.2381 0.2874 REMARK 3 15 1.8805 - 1.8377 0.99 2592 166 0.2094 0.2514 REMARK 3 16 1.8377 - 1.7986 0.99 2605 145 0.2094 0.2160 REMARK 3 17 1.7986 - 1.7626 0.99 2629 141 0.2400 0.2494 REMARK 3 18 1.7626 - 1.7294 0.98 2613 120 0.2394 0.3001 REMARK 3 19 1.7294 - 1.6985 0.98 2564 141 0.2506 0.2584 REMARK 3 20 1.6985 - 1.6697 0.99 2660 136 0.2641 0.2690 REMARK 3 21 1.6697 - 1.6428 0.99 2606 126 0.2922 0.2973 REMARK 3 22 1.6428 - 1.6175 0.99 2620 143 0.3099 0.3056 REMARK 3 23 1.6175 - 1.5937 0.99 2634 133 0.3255 0.3525 REMARK 3 24 1.5937 - 1.5712 0.97 2535 157 0.3636 0.3550 REMARK 3 25 1.5712 - 1.5500 0.90 2381 132 0.4074 0.3737 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.57 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3133 REMARK 3 ANGLE : 1.247 4248 REMARK 3 CHIRALITY : 0.070 437 REMARK 3 PLANARITY : 0.004 543 REMARK 3 DIHEDRAL : 13.766 1161 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 5.7958 19.5079 23.0066 REMARK 3 T TENSOR REMARK 3 T11: 0.2477 T22: 0.2087 REMARK 3 T33: 0.2961 T12: -0.0225 REMARK 3 T13: 0.0291 T23: -0.0214 REMARK 3 L TENSOR REMARK 3 L11: 0.8413 L22: 1.7011 REMARK 3 L33: 1.0101 L12: 0.2760 REMARK 3 L13: 0.1830 L23: -0.2899 REMARK 3 S TENSOR REMARK 3 S11: -0.0769 S12: 0.1328 S13: 0.0685 REMARK 3 S21: -0.2657 S22: 0.0816 S23: -0.0867 REMARK 3 S31: -0.1256 S32: 0.0934 S33: -0.0010 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4D3T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1290062085. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97945 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69172 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 37.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 4LWA REMARK 200 REMARK 200 REMARK: CC ONE HALF FOR FULL DATA SET AT 0.999 CC ONE HALF FOR REMARK 200 HIGH RESOLUTION SHELL AT 0.601 RMERGE FOR HIGH RESOLUTION SHELL REMARK 200 AT 2.151 REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 60 MM BIS-TRIS METHANE, 40 MM CITRIC REMARK 280 ACID, 20% PEG3350, 1.9% 1-PROPANOL, PH 7.6, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 40.21050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.45750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.21050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.45750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2283 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 117 -67.46 -95.12 REMARK 500 SER A 138 132.22 -170.11 REMARK 500 ALA A 233 70.29 -158.52 REMARK 500 ARG A 247 -68.79 -132.29 REMARK 500 ARG A 254 -126.23 -116.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 901 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 66 SG REMARK 620 2 HEM A 901 NA 98.6 REMARK 620 3 HEM A 901 NB 94.5 86.7 REMARK 620 4 HEM A 901 NC 95.3 165.6 88.4 REMARK 620 5 HEM A 901 ND 101.5 89.9 164.0 91.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RFQ A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 906 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POL A 907 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POL A 908 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 909 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 910 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 913 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4D3I RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 6,6'-((5-(AMINOMETHYL)-1,3-PHENYLENE) BIS(ETHANE-2,1-DIYL)) REMARK 900 BIS(4-METHYLPYRIDIN-2-AMINE) REMARK 900 RELATED ID: 4D3J RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 6,6'-(2,2'-(5-AMINO-1,3-PHENYLENE) BIS(ETHANE-2,1-DIYL))BIS(4- REMARK 900 METHYLPYRIDIN-2-AMINE) REMARK 900 RELATED ID: 4D3K RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 6,6'-((5-(3-AMINOPROPYL)-1,3- PHENYLENE)BIS(ETHANE-2,1-DIYL)) REMARK 900 BIS(4-METHYLPYRIDIN-2 -AMINE) REMARK 900 RELATED ID: 4D3M RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 3-(2-(6-AMINO-4-METHYLPYRIDIN-2-YL) ETHYL)-5-(2-(4-METHYL-6- REMARK 900 (METHYLAMINO)PYRIDIN-2-YL) ETHYL)BENZONITRILE REMARK 900 RELATED ID: 4D3N RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 3-(2-(6-AMINO-4-METHYLPYRIDIN-2-YL) ETHYL)-5-((2-(PYRIDIN-2-YL) REMARK 900 ETHYL)AMINO)BENZONITRILE REMARK 900 RELATED ID: 4D3O RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 6-(3-(2-(1H-PYRROLO(2,3-B)PYRIDIN- 6-YL)ETHYL)-5-(AMINOMETHYL) REMARK 900 PHENETHYL)-4-METHYLPYRIDIN- 2-AMINE REMARK 900 RELATED ID: 4D3U RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE H128S IN REMARK 900 COMPLEX WITH (S)-N-(3-(1-HYDROXY-2-(3-( THIOPHENE-2-CARBOXIMIDAMIDO) REMARK 900 PHENOXY)ETHYL)PHENYL)THIOPHENE -2-CARBOXIMIDAMIDE REMARK 900 RELATED ID: 4D3V RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE I218V IN REMARK 900 COMPLEX WITH (S)-N-(3-(1-HYDROXY-2-(3-( THIOPHENE-2-CARBOXIMIDAMIDO) REMARK 900 PHENOXY)ETHYL)PHENYL)THIOPHENE -2-CARBOXIMIDAMIDE REMARK 999 REMARK 999 SEQUENCE REMARK 999 MUTATIONS E25A, E26A, AND E316A INTRODUCED DBREF 4D3T A 1 363 UNP O34453 NOSO_BACSU 1 363 SEQADV 4D3T ALA A 25 UNP O34453 GLU 25 ENGINEERED MUTATION SEQADV 4D3T ALA A 26 UNP O34453 GLU 26 ENGINEERED MUTATION SEQADV 4D3T ALA A 316 UNP O34453 GLU 316 ENGINEERED MUTATION SEQRES 1 A 363 MET GLU GLU LYS GLU ILE LEU TRP ASN GLU ALA LYS ALA SEQRES 2 A 363 PHE ILE ALA ALA CYS TYR GLN GLU LEU GLY LYS ALA ALA SEQRES 3 A 363 GLU VAL LYS ASP ARG LEU ALA ASP ILE LYS SER GLU ILE SEQRES 4 A 363 ASP LEU THR GLY SER TYR VAL HIS THR LYS GLU GLU LEU SEQRES 5 A 363 GLU HIS GLY ALA LYS MET ALA TRP ARG ASN SER ASN ARG SEQRES 6 A 363 CYS ILE GLY ARG LEU PHE TRP ASN SER LEU ASN VAL ILE SEQRES 7 A 363 ASP ARG ARG ASP VAL ARG THR LYS GLU GLU VAL ARG ASP SEQRES 8 A 363 ALA LEU PHE HIS HIS ILE GLU THR ALA THR ASN ASN GLY SEQRES 9 A 363 LYS ILE ARG PRO THR ILE THR ILE PHE PRO PRO GLU GLU SEQRES 10 A 363 LYS GLY GLU LYS GLN VAL GLU ILE TRP ASN HIS GLN LEU SEQRES 11 A 363 ILE ARG TYR ALA GLY TYR GLU SER ASP GLY GLU ARG ILE SEQRES 12 A 363 GLY ASP PRO ALA SER CYS SER LEU THR ALA ALA CYS GLU SEQRES 13 A 363 GLU LEU GLY TRP ARG GLY GLU ARG THR ASP PHE ASP LEU SEQRES 14 A 363 LEU PRO LEU ILE PHE ARG MET LYS GLY ASP GLU GLN PRO SEQRES 15 A 363 VAL TRP TYR GLU LEU PRO ARG SER LEU VAL ILE GLU VAL SEQRES 16 A 363 PRO ILE THR HIS PRO ASP ILE GLU ALA PHE SER ASP LEU SEQRES 17 A 363 GLU LEU LYS TRP TYR GLY VAL PRO ILE ILE SER ASP MET SEQRES 18 A 363 LYS LEU GLU VAL GLY GLY ILE HIS TYR ASN ALA ALA PRO SEQRES 19 A 363 PHE ASN GLY TRP TYR MET GLY THR GLU ILE GLY ALA ARG SEQRES 20 A 363 ASN LEU ALA ASP GLU LYS ARG TYR ASP LYS LEU LYS LYS SEQRES 21 A 363 VAL ALA SER VAL ILE GLY ILE ALA ALA ASP TYR ASN THR SEQRES 22 A 363 ASP LEU TRP LYS ASP GLN ALA LEU VAL GLU LEU ASN LYS SEQRES 23 A 363 ALA VAL LEU HIS SER TYR LYS LYS GLN GLY VAL SER ILE SEQRES 24 A 363 VAL ASP HIS HIS THR ALA ALA SER GLN PHE LYS ARG PHE SEQRES 25 A 363 GLU GLU GLN ALA GLU GLU ALA GLY ARG LYS LEU THR GLY SEQRES 26 A 363 ASP TRP THR TRP LEU ILE PRO PRO ILE SER PRO ALA ALA SEQRES 27 A 363 THR HIS ILE PHE HIS ARG SER TYR ASP ASN SER ILE VAL SEQRES 28 A 363 LYS PRO ASN TYR PHE TYR GLN ASP LYS PRO TYR GLU HET HEM A 901 43 HET CL A 903 1 HET RFQ A 904 32 HET GOL A 905 6 HET GOL A 906 6 HET POL A 907 4 HET POL A 908 4 HET GOL A 909 6 HET GOL A 910 6 HET GOL A 913 6 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM CL CHLORIDE ION HETNAM RFQ N-{3-[(1S)-2-(3-{(Z)-[AMINO(THIOPHEN-2-YL) HETNAM 2 RFQ METHYLIDENE]AMINO}PHENOXY)-1- HETNAM 3 RFQ HYDROXYETHYL]PHENYL}THIOPHENE-2-CARBOXIMIDAMIDE HETNAM GOL GLYCEROL HETNAM POL N-PROPANOL HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN POL 1-PROPONOL FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 CL CL 1- FORMUL 4 RFQ C24 H21 N4 O2 S2 FORMUL 5 GOL 5(C3 H8 O3) FORMUL 7 POL 2(C3 H8 O) FORMUL 12 HOH *309(H2 O) HELIX 1 1 GLU A 2 LEU A 22 1 21 HELIX 2 2 LYS A 24 ALA A 26 5 3 HELIX 3 3 GLU A 27 GLY A 43 1 17 HELIX 4 4 THR A 48 ASN A 62 1 15 HELIX 5 5 GLY A 68 LEU A 75 5 8 HELIX 6 6 THR A 85 ASN A 102 1 18 HELIX 7 7 ASN A 103 LYS A 105 5 3 HELIX 8 8 SER A 148 LEU A 158 1 11 HELIX 9 9 PRO A 188 VAL A 192 5 5 HELIX 10 10 ILE A 202 GLU A 209 5 8 HELIX 11 11 GLY A 241 ALA A 246 1 6 HELIX 12 12 LYS A 257 ILE A 265 1 9 HELIX 13 13 TYR A 271 ASP A 274 5 4 HELIX 14 14 LEU A 275 GLY A 296 1 22 HELIX 15 15 ASP A 301 GLY A 320 1 20 HELIX 16 16 ASP A 326 ILE A 331 1 6 HELIX 17 17 SER A 335 THR A 339 5 5 HELIX 18 18 THR A 339 ARG A 344 5 6 SHEET 1 AA 4 ASN A 76 ASP A 79 0 SHEET 2 AA 4 THR A 109 ILE A 112 1 O ILE A 110 N ILE A 78 SHEET 3 AA 4 PHE A 235 ASN A 236 -1 O ASN A 236 N THR A 109 SHEET 4 AA 4 ILE A 217 ILE A 218 -1 O ILE A 218 N PHE A 235 SHEET 1 AB 3 VAL A 123 ILE A 125 0 SHEET 2 AB 3 LEU A 172 MET A 176 -1 O ARG A 175 N GLU A 124 SHEET 3 AB 3 VAL A 183 TYR A 185 -1 O VAL A 183 N PHE A 174 SHEET 1 AC 2 GLY A 135 SER A 138 0 SHEET 2 AC 2 GLU A 141 GLY A 144 -1 O GLU A 141 N SER A 138 SHEET 1 AD 2 GLU A 194 PRO A 196 0 SHEET 2 AD 2 LYS A 211 TYR A 213 -1 O TRP A 212 N VAL A 195 SHEET 1 AE 3 ILE A 228 TYR A 230 0 SHEET 2 AE 3 LYS A 222 VAL A 225 -1 O LEU A 223 N TYR A 230 SHEET 3 AE 3 ASN A 354 PHE A 356 -1 O ASN A 354 N GLU A 224 SHEET 1 AF 2 TYR A 239 MET A 240 0 SHEET 2 AF 2 ILE A 299 VAL A 300 1 N VAL A 300 O TYR A 239 LINK SG CYS A 66 FE HEM A 901 1555 1555 2.45 CISPEP 1 LYS A 352 PRO A 353 0 -1.84 SITE 1 AC1 17 TRP A 60 SER A 63 ARG A 65 CYS A 66 SITE 2 AC1 17 PHE A 235 ASN A 236 TRP A 238 GLU A 243 SITE 3 AC1 17 TRP A 329 TYR A 355 TYR A 357 RFQ A 904 SITE 4 AC1 17 GOL A 906 POL A 907 HOH A2300 HOH A2301 SITE 5 AC1 17 HOH A2302 SITE 1 AC2 4 GLN A 129 TYR A 239 ASN A 248 POL A 907 SITE 1 AC3 18 HIS A 128 PRO A 216 ILE A 218 PHE A 235 SITE 2 AC3 18 ASN A 236 GLY A 237 TRP A 238 GLU A 243 SITE 3 AC3 18 ARG A 247 TRP A 327 THR A 328 TRP A 329 SITE 4 AC3 18 PHE A 342 HEM A 901 POL A 907 HOH A2114 SITE 5 AC3 18 HOH A2300 HOH A2303 SITE 1 AC4 10 GLU A 156 TRP A 160 ARG A 161 TRP A 238 SITE 2 AC4 10 SER A 298 ILE A 299 HOH A2140 HOH A2142 SITE 3 AC4 10 HOH A2256 HOH A2305 SITE 1 AC5 6 MET A 221 TYR A 355 PHE A 356 TYR A 357 SITE 2 AC5 6 HEM A 901 HOH A2306 SITE 1 AC6 7 GLU A 243 ARG A 247 ASN A 248 HEM A 901 SITE 2 AC6 7 CL A 903 RFQ A 904 HOH A2302 SITE 1 AC7 3 GLY A 144 ASP A 166 LYS A 257 SITE 1 AC8 6 VAL A 183 TRP A 184 ASP A 270 ASN A 272 SITE 2 AC8 6 HOH A2160 HOH A2235 SITE 1 AC9 8 TRP A 327 THR A 328 ARG A 344 SER A 345 SITE 2 AC9 8 HOH A2040 HOH A2041 HOH A2293 HOH A2308 SITE 1 BC1 5 TYR A 136 SER A 138 GLU A 141 ILE A 143 SITE 2 BC1 5 ARG A 164 CRYST1 80.421 94.915 62.859 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012435 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010536 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015909 0.00000