HEADER CELL ADHESION 24-OCT-14 4D3W TITLE CRYSTAL STRUCTURE OF EPITHELIAL ADHESIN 1 A DOMAIN (EPA1A) FROM TITLE 2 CANDIDA GLABRATA IN COMPLEX WITH THE T-ANTIGEN (GALB1-3GALNAC) COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPITHELIAL ADHESIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ADHESION DOMAIN (A DOMAIN), RESIDUES 31-271; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDA GLABRATA CBS 138; SOURCE 3 ORGANISM_TAXID: 284593; SOURCE 4 STRAIN: CBS138; SOURCE 5 ATCC: 2001; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI B; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 37762; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: SHUFFLE T7 EXPRESS (C3029); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS CELL ADHESION, LECTIN, TISSUE INVASION, PATHOGENICITY EXPDTA X-RAY DIFFRACTION AUTHOR M.KOCK,M.MAESTRE-REYNA,R.DIDERRICH,H.-U.MOESCH,L.-O.ESSEN REVDAT 8 06-NOV-24 4D3W 1 REMARK REVDAT 7 20-DEC-23 4D3W 1 HETSYN REVDAT 6 29-JUL-20 4D3W 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE ATOM REVDAT 5 22-MAY-19 4D3W 1 REMARK REVDAT 4 14-JUN-17 4D3W 1 HET REVDAT 3 19-AUG-15 4D3W 1 JRNL REVDAT 2 08-JUL-15 4D3W 1 JRNL REVDAT 1 01-JUL-15 4D3W 0 JRNL AUTH R.DIDERRICH,M.KOCK,M.MAESTRE-REYNA,S.RUPP,L.-O.ESSEN, JRNL AUTH 2 H.-U.MOESCH JRNL TITL STRUCTURAL HOTSPOTS DETERMINE FUNCTIONAL DIVERSITY OF THE JRNL TITL 2 CANDIDA GLABRATA EPITHELIAL ADHESIN FAMILY JRNL REF J.BIOL.CHEM. V. 290 19597 2015 JRNL REFN ISSN 0021-9258 JRNL PMID 26105055 JRNL DOI 10.1074/JBC.M115.655654 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 33528 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1767 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2436 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1990 REMARK 3 BIN FREE R VALUE SET COUNT : 118 REMARK 3 BIN FREE R VALUE : 0.2530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1807 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 236 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.19000 REMARK 3 B22 (A**2) : -0.19000 REMARK 3 B33 (A**2) : 0.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.072 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.071 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.043 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.132 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2019 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1761 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2766 ; 1.611 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4079 ; 0.815 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 251 ; 6.405 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 97 ;29.837 ;23.608 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 295 ;13.231 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;13.127 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 287 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2328 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 504 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 950 ; 1.377 ; 1.384 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 949 ; 1.361 ; 1.380 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1201 ; 2.338 ; 2.064 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1069 ; 1.615 ; 1.511 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 4D3W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1290060892. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : KMC-1 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH MARMOSAIC 255 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35383 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 24.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.60 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4ASL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5 MM CALCL2, 5 MM T-ANTIGEN (GAL-B-1, REMARK 280 3-GALNAC), 100 MM HEPES PH 7, 20% PEG 6000, 291 K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.87500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 27.50500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 27.50500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.93750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 27.50500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 27.50500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 104.81250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 27.50500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 27.50500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 34.93750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 27.50500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 27.50500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 104.81250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 69.87500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 426 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 628 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 SER A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 SER A 20 REMARK 465 SER A 21 REMARK 465 GLY A 22 REMARK 465 LEU A 23 REMARK 465 VAL A 24 REMARK 465 PRO A 25 REMARK 465 ARG A 26 REMARK 465 GLY A 27 REMARK 465 SER A 28 REMARK 465 HIS A 29 REMARK 465 MET A 30 REMARK 465 THR A 31 REMARK 465 SER A 32 REMARK 465 SER A 33 REMARK 465 ASN A 34 REMARK 465 ASP A 35 REMARK 465 ILE A 36 REMARK 465 SER A 37 REMARK 465 LEU A 38 REMARK 465 ALA A 39 REMARK 465 ILE A 266 REMARK 465 SER A 267 REMARK 465 TYR A 268 REMARK 465 ASP A 269 REMARK 465 SER A 270 REMARK 465 SER A 271 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 146 O HOH A 401 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 80 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 LEU A 166 CA - CB - CG ANGL. DEV. = 18.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 53 65.62 -102.36 REMARK 500 ASN A 140 94.30 -162.69 REMARK 500 ALA A 176 -61.37 -90.75 REMARK 500 GLU A 227 150.61 178.58 REMARK 500 TYR A 228 -142.31 62.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 636 DISTANCE = 7.37 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 164 OD1 REMARK 620 2 ASP A 165 OD2 81.0 REMARK 620 3 ASN A 225 OD1 112.7 72.3 REMARK 620 4 GLU A 227 O 164.6 113.1 78.9 REMARK 620 5 ASP A 229 O 80.5 136.1 78.8 92.3 REMARK 620 6 GAL B 2 O3 91.5 72.5 132.9 87.1 147.2 REMARK 620 7 GAL B 2 O4 75.6 131.4 156.3 89.8 81.0 66.3 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4COU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EPITHELIAL ADHESIN 6 A DOMAIN ( EPA6A) FROM REMARK 900 CANDIDA GLABRATA IN COMPLEX WITH LACTOSE REMARK 900 RELATED ID: 4COV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EPITHELIAL ADHESIN 6 A DOMAIN ( EPA6A) FROM REMARK 900 CANDIDA GLABRATA IN COMPLEX WITH GALA1- 3GAL REMARK 900 RELATED ID: 4COW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EPITHELIAL ADHESIN 6 A DOMAIN ( EPA6A) FROM REMARK 900 CANDIDA GLABRATA IN COMPLEX WITH THE T- ANTIGEN (GALB1-3GALNAC) REMARK 900 RELATED ID: 4COY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EPITHELIAL ADHESIN 6 A DOMAIN ( EPA6A) FROM REMARK 900 CANDIDA GLABRATA IN COMPLEX WITH GALB1- 4GLCNAC REMARK 900 RELATED ID: 4COZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EPITHELIAL ADHESIN 6 A DOMAIN ( EPA6A) FROM REMARK 900 CANDIDA GLABRATA IN COMPLEX WITH GALB1- 3GLCNAC DBREF 4D3W A 31 271 UNP Q6FUW5 Q6FUW5_CANGA 31 271 SEQADV 4D3W MET A 10 UNP Q6FUW5 EXPRESSION TAG SEQADV 4D3W GLY A 11 UNP Q6FUW5 EXPRESSION TAG SEQADV 4D3W SER A 12 UNP Q6FUW5 EXPRESSION TAG SEQADV 4D3W SER A 13 UNP Q6FUW5 EXPRESSION TAG SEQADV 4D3W HIS A 14 UNP Q6FUW5 EXPRESSION TAG SEQADV 4D3W HIS A 15 UNP Q6FUW5 EXPRESSION TAG SEQADV 4D3W HIS A 16 UNP Q6FUW5 EXPRESSION TAG SEQADV 4D3W HIS A 17 UNP Q6FUW5 EXPRESSION TAG SEQADV 4D3W HIS A 18 UNP Q6FUW5 EXPRESSION TAG SEQADV 4D3W HIS A 19 UNP Q6FUW5 EXPRESSION TAG SEQADV 4D3W SER A 20 UNP Q6FUW5 EXPRESSION TAG SEQADV 4D3W SER A 21 UNP Q6FUW5 EXPRESSION TAG SEQADV 4D3W GLY A 22 UNP Q6FUW5 EXPRESSION TAG SEQADV 4D3W LEU A 23 UNP Q6FUW5 EXPRESSION TAG SEQADV 4D3W VAL A 24 UNP Q6FUW5 EXPRESSION TAG SEQADV 4D3W PRO A 25 UNP Q6FUW5 EXPRESSION TAG SEQADV 4D3W ARG A 26 UNP Q6FUW5 EXPRESSION TAG SEQADV 4D3W GLY A 27 UNP Q6FUW5 EXPRESSION TAG SEQADV 4D3W SER A 28 UNP Q6FUW5 EXPRESSION TAG SEQADV 4D3W HIS A 29 UNP Q6FUW5 EXPRESSION TAG SEQADV 4D3W MET A 30 UNP Q6FUW5 EXPRESSION TAG SEQRES 1 A 262 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 262 LEU VAL PRO ARG GLY SER HIS MET THR SER SER ASN ASP SEQRES 3 A 262 ILE SER LEU ALA SER LYS ASP PRO THR THR PHE PRO LEU SEQRES 4 A 262 GLY CYS SER PRO ASP ILE THR THR PRO LYS LYS GLY LEU SEQRES 5 A 262 SER MET GLU LEU TYR SER TYR ASP PHE ARG LYS LYS GLY SEQRES 6 A 262 SER TYR PRO CYS TRP ASP ALA ALA TYR LEU ASP PRO ASN SEQRES 7 A 262 TYR PRO ARG THR GLY TYR LYS SER HIS ARG LEU LEU ALA SEQRES 8 A 262 LYS VAL ASP GLY VAL THR GLY ASN ILE ASN PHE TYR TYR SEQRES 9 A 262 HIS ALA THR LYS GLY CYS THR PRO GLN LEU GLY HIS LEU SEQRES 10 A 262 PRO ALA SER TYR ASN TYR PRO LYS PRO LEU THR MET THR SEQRES 11 A 262 ASN PHE THR MET LEU LEU TYR GLY TYR PHE ARG PRO LYS SEQRES 12 A 262 VAL THR GLY PHE HIS THR PHE THR ILE SER ALA ASP ASP SEQRES 13 A 262 LEU LEU PHE VAL ASN PHE GLY ALA GLY ASN ALA PHE ASP SEQRES 14 A 262 CYS CYS ARG ARG ASP SER SER ALA ASP HIS PHE GLY ASN SEQRES 15 A 262 TYR GLN ALA TYR ALA ILE TRP GLY SER LYS THR ALA LYS SEQRES 16 A 262 ASP GLU LEU THR VAL HIS LEU ASP ALA GLY VAL TYR TYR SEQRES 17 A 262 PRO ILE ARG LEU PHE TYR ASN ASN ARG GLU TYR ASP GLY SEQRES 18 A 262 ALA LEU SER PHE THR PHE LYS THR GLU SER ASN GLU ASN SEQRES 19 A 262 THR VAL SER ASP PHE SER GLU TYR PHE PHE SER LEU ASP SEQRES 20 A 262 ASP THR GLU GLU GLY CYS PRO GLY LEU ILE SER TYR ASP SEQRES 21 A 262 SER SER HET NGA B 1 15 HET A2G B 1 15 HET GAL B 2 11 HET CA A 301 1 HET GOL A 305 6 HETNAM NGA 2-ACETAMIDO-2-DEOXY-BETA-D-GALACTOPYRANOSE HETNAM A2G 2-ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN NGA N-ACETYL-BETA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NGA BETA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 NGA ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-D-GALACTOSAMINE HETSYN A2G N-ACETYL-ALPHA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 A2G ALPHA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 A2G ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-2-DEOXY-2-AMINO- HETSYN 4 A2G GALACTOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NGA C8 H15 N O6 FORMUL 2 A2G C8 H15 N O6 FORMUL 2 GAL C6 H12 O6 FORMUL 3 CA CA 2+ FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *236(H2 O) HELIX 1 AA1 ASP A 80 ASP A 85 5 6 HELIX 2 AA2 THR A 91 HIS A 96 5 6 HELIX 3 AA3 PRO A 127 ASN A 131 5 5 HELIX 4 AA4 ARG A 181 ALA A 186 1 6 HELIX 5 AA5 ASP A 187 PHE A 189 5 3 SHEET 1 AA1 5 LYS A 58 LYS A 59 0 SHEET 2 AA1 5 PHE A 252 SER A 254 -1 O SER A 254 N LYS A 58 SHEET 3 AA1 5 PHE A 141 PHE A 149 -1 N TYR A 148 O PHE A 253 SHEET 4 AA1 5 LEU A 61 SER A 67 -1 N TYR A 66 O THR A 142 SHEET 5 AA1 5 LEU A 98 VAL A 105 -1 O VAL A 102 N MET A 63 SHEET 1 AA2 6 LYS A 58 LYS A 59 0 SHEET 2 AA2 6 PHE A 252 SER A 254 -1 O SER A 254 N LYS A 58 SHEET 3 AA2 6 PHE A 141 PHE A 149 -1 N TYR A 148 O PHE A 253 SHEET 4 AA2 6 TYR A 217 ASN A 225 -1 O TYR A 223 N MET A 143 SHEET 5 AA2 6 LEU A 166 PHE A 171 -1 N PHE A 168 O PHE A 222 SHEET 6 AA2 6 ALA A 194 ILE A 197 -1 O ALA A 194 N VAL A 169 SHEET 1 AA3 4 PHE A 111 TYR A 113 0 SHEET 2 AA3 4 GLY A 230 THR A 238 -1 O GLY A 230 N TYR A 113 SHEET 3 AA3 4 GLY A 155 ASP A 164 -1 N THR A 158 O LYS A 237 SHEET 4 AA3 4 LYS A 204 LEU A 211 -1 O VAL A 209 N HIS A 157 SHEET 1 AA4 2 LEU A 123 GLY A 124 0 SHEET 2 AA4 2 LEU A 136 THR A 137 -1 O LEU A 136 N GLY A 124 SSBOND 1 CYS A 50 CYS A 179 1555 1555 2.03 SSBOND 2 CYS A 78 CYS A 119 1555 1555 2.02 SSBOND 3 CYS A 180 CYS A 262 1555 1555 2.05 LINK O3 ANGA B 1 C1 GAL B 2 1555 1555 1.42 LINK O3 BA2G B 1 C1 GAL B 2 1555 1555 1.42 LINK OD1 ASP A 164 CA CA A 301 1555 1555 2.39 LINK OD2 ASP A 165 CA CA A 301 1555 1555 2.41 LINK OD1 ASN A 225 CA CA A 301 1555 1555 2.39 LINK O GLU A 227 CA CA A 301 1555 1555 2.34 LINK O ASP A 229 CA CA A 301 1555 1555 2.37 LINK CA CA A 301 O3 GAL B 2 1555 1555 2.40 LINK CA CA A 301 O4 GAL B 2 1555 1555 2.41 CISPEP 1 TYR A 76 PRO A 77 0 -3.43 CISPEP 2 TYR A 76 PRO A 77 0 -3.37 CISPEP 3 ASP A 164 ASP A 165 0 10.79 CRYST1 55.010 55.010 139.750 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018179 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018179 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007156 0.00000