HEADER HYDROLASE 07-NOV-14 4D5O TITLE HYPOCREA JECORINA CELLOBIOHYDROLASE CEL7A E212Q SOAKED WITH TITLE 2 XYLOPENTAOSE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULOSE 1,4-BETA-CELLOBIOSIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC MODULE, RESIDUES 18-451; COMPND 5 SYNONYM: CELLOBIOHYDROLASE I, 1,4-BETA-CELLOBIOHYDROLASE, CBHI, COMPND 6 CELLOBIOHYDROLASE CEL7A; COMPND 7 EC: 3.2.1.176; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 OTHER_DETAILS: COMPLEX WITH XYLOTETRAOSE LIGAND BOUND AT SUBSITES -7 COMPND 11 TO -3 IN THE SUBSTRATE BINDING TUNNEL OF THE ENZYME SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HYPOCREA JECORINA; SOURCE 3 ORGANISM_COMMON: FUNGUS; SOURCE 4 ORGANISM_TAXID: 51453; SOURCE 5 STRAIN: QM9414; SOURCE 6 VARIANT: VTT-D-93201; SOURCE 7 EXPRESSION_SYSTEM: HYPOCREA JECORINA; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 51453; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: VTT-D-93201; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PEM-F5; SOURCE 12 OTHER_DETAILS: HYPOCREA JECORINA WAS PREVIOUSLY KNOWN AS TRICHODERMA SOURCE 13 REESEI. KEYWDS HYDROLASE, GLYCOSIDE HYDROLASE, CELLOBIOHYDROLASE, CELLULASE. KEYWDS 2 INHIBITION, XYLOOLIGOSACCHARIDES EXPDTA X-RAY DIFFRACTION AUTHOR M.H.MOMENI,W.UBHAYASEKERA,J.STAHLBERG,H.HANSSON REVDAT 9 13-NOV-24 4D5O 1 REMARK REVDAT 8 20-DEC-23 4D5O 1 HETSYN REVDAT 7 29-JUL-20 4D5O 1 COMPND REMARK HET HETNAM REVDAT 7 2 1 HETSYN FORMUL LINK SITE REVDAT 7 3 1 ATOM REVDAT 6 11-MAR-20 4D5O 1 SEQRES LINK REVDAT 5 06-FEB-19 4D5O 1 REMARK REVDAT 4 30-JAN-19 4D5O 1 REMARK ATOM REVDAT 3 17-JAN-18 4D5O 1 REMARK REVDAT 2 17-JUN-15 4D5O 1 JRNL REVDAT 1 25-MAR-15 4D5O 0 JRNL AUTH M.HADDAD MOMENI,W.UBHAYASEKERA,M.SANDGREN,J.STAHLBERG, JRNL AUTH 2 H.HANSSON JRNL TITL STRUCTURAL INSIGHTS INTO THE INHIBITION OF CELLOBIOHYDROLASE JRNL TITL 2 CEL7A BY XYLOOLIGOSACCHARIDES. JRNL REF FEBS J. V. 282 2167 2015 JRNL REFN ISSN 1742-464X JRNL PMID 25765184 JRNL DOI 10.1111/FEBS.13265 REMARK 2 REMARK 2 RESOLUTION. 1.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 54465 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2910 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.52 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3126 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.8290 REMARK 3 BIN FREE R VALUE SET COUNT : 167 REMARK 3 BIN FREE R VALUE : 0.8830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3224 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 82 REMARK 3 SOLVENT ATOMS : 561 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.54000 REMARK 3 B22 (A**2) : 2.26000 REMARK 3 B33 (A**2) : -0.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.106 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.105 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.023 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3513 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4822 ; 1.390 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 474 ; 6.427 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 152 ;35.469 ;25.921 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 513 ;12.128 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;18.380 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 537 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2712 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1777 ; 0.779 ; 1.325 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2230 ; 1.232 ; 1.987 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1736 ; 1.013 ; 1.426 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT. U REMARK 3 VALUES, REFINED INDIVIDUALLY A XYLOTETRAOSE LIGAND AT SUBSITES - REMARK 3 7 TO -3 IN THE SUBSTRATE BINDING TUNNEL OF THE ENZYME IS REMARK 3 INCLUDED IN THE FINAL MODEL. REMARK 4 REMARK 4 4D5O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1290062221. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.041 REMARK 200 MONOCHROMATOR : BENT SI (111) CRYSTAL, REMARK 200 HORIZONTALLY FOCUSING REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH MAR165 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57623 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.520 REMARK 200 RESOLUTION RANGE LOW (A) : 27.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC 5 REMARK 200 STARTING MODEL: PDB ENTRY 3CEL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NA-MES (PH 6.0), 20% MONOMETHYL REMARK 280 ETHER PEG 5000, 0.01 M COCL2, 12.5% GLYCEROL, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.61600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.54650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 55.04450 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.61600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.54650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.04450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.61600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.54650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.04450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.61600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 41.54650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 55.04450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 83.23200 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 220.17800 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CO CO A1436 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2200 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2201 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2366 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2500 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2218 O HOH A 2218 3657 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 99 -131.34 -120.43 REMARK 500 SER A 379 -154.82 -137.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2113 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A2141 DISTANCE = 7.53 ANGSTROMS REMARK 525 HOH A2185 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A2236 DISTANCE = 7.11 ANGSTROMS REMARK 525 HOH A2276 DISTANCE = 6.17 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 COBALT (II) ION (CO): 10 MM COBALT CHLORIDE WAS PRESENT IN REMARK 600 CRYSTALLISATION SOLUTION REMARK 600 PYROGLUTAMIC ACID (PCA): MODIFIED N-TERMINAL GLN SIDECHAIN REMARK 600 GLYCEROL (GOL): 12.5 PERCENT GLYCEROL WAS PRESENT IN REMARK 600 CRYOPROTECTANT SOLUTION REMARK 600 N-ACETYL-D-GLUCOSAMINE (NAG): N-GLYCOSYLATION REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A1435 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 206 NE2 REMARK 620 2 GLU A 239 OE2 97.0 REMARK 620 3 HOH A2349 O 89.1 162.9 REMARK 620 4 HOH A2350 O 86.0 104.7 91.6 REMARK 620 5 HOH A2377 O 164.3 80.7 97.6 79.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A1436 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 295 OE2 REMARK 620 2 GLU A 295 OE1 59.7 REMARK 620 3 GLU A 295 OE2 125.8 173.7 REMARK 620 4 GLU A 295 OE1 174.1 115.1 59.5 REMARK 620 5 GLU A 325 OE2 96.7 88.0 88.3 85.7 REMARK 620 6 GLU A 325 OE2 88.7 86.1 96.7 88.0 168.6 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4D5I RELATED DB: PDB REMARK 900 HYPOCREA JECORINA CELLOBIOHYDROLASE CEL7A E212Q SOAKED WITH REMARK 900 XYLOTRIOSE. REMARK 900 RELATED ID: 4D5J RELATED DB: PDB REMARK 900 HYPOCREA JECORINA CELLOBIOHYDROLASE CEL7A E217Q SOAKED WITH REMARK 900 XYLOTRIOSE. REMARK 900 RELATED ID: 4D5P RELATED DB: PDB REMARK 900 HYPOCREA JECORINA CELLOBIOHYDROLASE CEL7A E217Q SOAKED WITH REMARK 900 XYLOPENTAOSE. REMARK 900 RELATED ID: 4D5Q RELATED DB: PDB REMARK 900 HYPOCREA JECORINA CEL7A (WILD TYPE) SOAKED WITH XYLOPENTAOSE. REMARK 900 RELATED ID: 4D5V RELATED DB: PDB REMARK 900 HYPOCREA JECORINA CELLOBIOHYDROLASE CEL7A E217Q SOAKED WITH REMARK 900 XYLOTETRAOSE. DBREF 4D5O A 1 434 UNP P62694 GUX1_HYPJE 18 451 SEQADV 4D5O ASP A 94 UNP P62694 GLY 111 CLONING ARTIFACT SEQADV 4D5O GLN A 212 UNP P62694 GLU 229 ENGINEERED MUTATION SEQRES 1 A 434 PCA SER ALA CYS THR LEU GLN SER GLU THR HIS PRO PRO SEQRES 2 A 434 LEU THR TRP GLN LYS CYS SER SER GLY GLY THR CYS THR SEQRES 3 A 434 GLN GLN THR GLY SER VAL VAL ILE ASP ALA ASN TRP ARG SEQRES 4 A 434 TRP THR HIS ALA THR ASN SER SER THR ASN CYS TYR ASP SEQRES 5 A 434 GLY ASN THR TRP SER SER THR LEU CYS PRO ASP ASN GLU SEQRES 6 A 434 THR CYS ALA LYS ASN CYS CYS LEU ASP GLY ALA ALA TYR SEQRES 7 A 434 ALA SER THR TYR GLY VAL THR THR SER GLY ASN SER LEU SEQRES 8 A 434 SER ILE ASP PHE VAL THR GLN SER ALA GLN LYS ASN VAL SEQRES 9 A 434 GLY ALA ARG LEU TYR LEU MET ALA SER ASP THR THR TYR SEQRES 10 A 434 GLN GLU PHE THR LEU LEU GLY ASN GLU PHE SER PHE ASP SEQRES 11 A 434 VAL ASP VAL SER GLN LEU PRO CYS GLY LEU ASN GLY ALA SEQRES 12 A 434 LEU TYR PHE VAL SER MET ASP ALA ASP GLY GLY VAL SER SEQRES 13 A 434 LYS TYR PRO THR ASN THR ALA GLY ALA LYS TYR GLY THR SEQRES 14 A 434 GLY TYR CYS ASP SER GLN CYS PRO ARG ASP LEU LYS PHE SEQRES 15 A 434 ILE ASN GLY GLN ALA ASN VAL GLU GLY TRP GLU PRO SER SEQRES 16 A 434 SER ASN ASN ALA ASN THR GLY ILE GLY GLY HIS GLY SER SEQRES 17 A 434 CYS CYS SER GLN MET ASP ILE TRP GLU ALA ASN SER ILE SEQRES 18 A 434 SER GLU ALA LEU THR PRO HIS PRO CYS THR THR VAL GLY SEQRES 19 A 434 GLN GLU ILE CYS GLU GLY ASP GLY CYS GLY GLY THR TYR SEQRES 20 A 434 SER ASP ASN ARG TYR GLY GLY THR CYS ASP PRO ASP GLY SEQRES 21 A 434 CYS ASP TRP ASN PRO TYR ARG LEU GLY ASN THR SER PHE SEQRES 22 A 434 TYR GLY PRO GLY SER SER PHE THR LEU ASP THR THR LYS SEQRES 23 A 434 LYS LEU THR VAL VAL THR GLN PHE GLU THR SER GLY ALA SEQRES 24 A 434 ILE ASN ARG TYR TYR VAL GLN ASN GLY VAL THR PHE GLN SEQRES 25 A 434 GLN PRO ASN ALA GLU LEU GLY SER TYR SER GLY ASN GLU SEQRES 26 A 434 LEU ASN ASP ASP TYR CYS THR ALA GLU GLU ALA GLU PHE SEQRES 27 A 434 GLY GLY SER SER PHE SER ASP LYS GLY GLY LEU THR GLN SEQRES 28 A 434 PHE LYS LYS ALA THR SER GLY GLY MET VAL LEU VAL MET SEQRES 29 A 434 SER LEU TRP ASP ASP TYR TYR ALA ASN MET LEU TRP LEU SEQRES 30 A 434 ASP SER THR TYR PRO THR ASN GLU THR SER SER THR PRO SEQRES 31 A 434 GLY ALA VAL ARG GLY SER CYS SER THR SER SER GLY VAL SEQRES 32 A 434 PRO ALA GLN VAL GLU SER GLN SER PRO ASN ALA LYS VAL SEQRES 33 A 434 THR PHE SER ASN ILE LYS PHE GLY PRO ILE GLY SER THR SEQRES 34 A 434 GLY ASN PRO SER GLY MODRES 4D5O ASN A 270 ASN GLYCOSYLATION SITE MODRES 4D5O PCA A 1 GLU PYROGLUTAMIC ACID HET PCA A 1 8 HET XYP B 1 10 HET XYP B 2 9 HET XYP B 3 9 HET XYP B 4 9 HET BGC C 1 12 HET GAL C 2 11 HET CO A1435 1 HET CO A1436 1 HET NAG A1437 14 HET GOL A1443 6 HETNAM PCA PYROGLUTAMIC ACID HETNAM XYP BETA-D-XYLOPYRANOSE HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM CO COBALT (II) ION HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GOL GLYCEROL HETSYN XYP BETA-D-XYLOSE; D-XYLOSE; XYLOSE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 PCA C5 H7 N O3 FORMUL 2 XYP 4(C5 H10 O5) FORMUL 3 BGC C6 H12 O6 FORMUL 3 GAL C6 H12 O6 FORMUL 4 CO 2(CO 2+) FORMUL 6 NAG C8 H15 N O6 FORMUL 7 GOL C3 H8 O3 FORMUL 8 HOH *561(H2 O) HELIX 1 1 ALA A 36 ARG A 39 5 4 HELIX 2 2 ASP A 63 ASN A 70 1 8 HELIX 3 3 GLY A 164 GLY A 168 5 5 HELIX 4 4 ASP A 241 GLY A 244 5 4 HELIX 5 5 ASN A 327 GLY A 339 1 13 HELIX 6 6 SER A 341 LYS A 346 1 6 HELIX 7 7 GLY A 347 SER A 357 1 11 HELIX 8 8 MET A 374 SER A 379 1 6 HELIX 9 9 VAL A 403 SER A 411 1 9 SHEET 1 AA 3 SER A 2 ALA A 3 0 SHEET 2 AA 3 CYS A 71 LEU A 73 1 O CYS A 71 N SER A 2 SHEET 3 AA 3 THR A 41 ALA A 43 -1 O HIS A 42 N CYS A 72 SHEET 1 AB 7 VAL A 84 SER A 87 0 SHEET 2 AB 7 SER A 90 ASP A 94 1 O SER A 90 N SER A 87 SHEET 3 AB 7 LYS A 415 PRO A 425 1 O VAL A 416 N ILE A 93 SHEET 4 AB 7 ASN A 125 ASP A 132 -1 O GLU A 126 N GLY A 424 SHEET 5 AB 7 LEU A 288 PHE A 294 -1 O LEU A 288 N VAL A 131 SHEET 6 AB 7 ILE A 300 GLN A 306 -1 O ASN A 301 N GLN A 293 SHEET 7 AB 7 VAL A 309 GLN A 312 -1 O VAL A 309 N GLN A 306 SHEET 1 AC 7 VAL A 84 SER A 87 0 SHEET 2 AC 7 SER A 90 ASP A 94 1 O SER A 90 N SER A 87 SHEET 3 AC 7 LYS A 415 PRO A 425 1 O VAL A 416 N ILE A 93 SHEET 4 AC 7 PRO A 13 CYS A 19 1 O GLN A 17 N PHE A 423 SHEET 5 AC 7 CYS A 25 ILE A 34 -1 O THR A 26 N LYS A 18 SHEET 6 AC 7 ALA A 106 SER A 113 -1 O TYR A 109 N VAL A 33 SHEET 7 AC 7 THR A 116 TYR A 117 -1 O THR A 116 N ALA A 112 SHEET 1 AD10 VAL A 84 SER A 87 0 SHEET 2 AD10 SER A 90 ASP A 94 1 O SER A 90 N SER A 87 SHEET 3 AD10 LYS A 415 PRO A 425 1 O VAL A 416 N ILE A 93 SHEET 4 AD10 PRO A 13 CYS A 19 1 O GLN A 17 N PHE A 423 SHEET 5 AD10 CYS A 25 ILE A 34 -1 O THR A 26 N LYS A 18 SHEET 6 AD10 ALA A 106 SER A 113 -1 O TYR A 109 N VAL A 33 SHEET 7 AD10 GLY A 359 ASP A 368 -1 O LEU A 362 N LEU A 110 SHEET 8 AD10 LEU A 140 VAL A 147 -1 O ASN A 141 N TRP A 367 SHEET 9 AD10 GLN A 212 ALA A 218 -1 O MET A 213 N PHE A 146 SHEET 10 AD10 GLU A 223 HIS A 228 -1 O ALA A 224 N GLU A 217 SHEET 1 AE 8 VAL A 84 SER A 87 0 SHEET 2 AE 8 SER A 90 ASP A 94 1 O SER A 90 N SER A 87 SHEET 3 AE 8 LYS A 415 PRO A 425 1 O VAL A 416 N ILE A 93 SHEET 4 AE 8 PRO A 13 CYS A 19 1 O GLN A 17 N PHE A 423 SHEET 5 AE 8 CYS A 25 ILE A 34 -1 O THR A 26 N LYS A 18 SHEET 6 AE 8 ALA A 106 SER A 113 -1 O TYR A 109 N VAL A 33 SHEET 7 AE 8 GLY A 359 ASP A 368 -1 O LEU A 362 N LEU A 110 SHEET 8 AE 8 GLU A 119 THR A 121 -1 O PHE A 120 N MET A 360 SHEET 1 AF 2 THR A 116 TYR A 117 0 SHEET 2 AF 2 ALA A 106 SER A 113 -1 N ALA A 112 O THR A 116 SHEET 1 AG 2 TYR A 51 ASP A 52 0 SHEET 2 AG 2 THR A 55 TRP A 56 -1 O THR A 55 N ASP A 52 SHEET 1 AH 2 VAL A 96 GLN A 98 0 SHEET 2 AH 2 LYS A 102 VAL A 104 -1 O ASN A 103 N THR A 97 SHEET 1 AI 2 PHE A 182 ILE A 183 0 SHEET 2 AI 2 GLN A 186 ALA A 187 -1 O GLN A 186 N ILE A 183 SHEET 1 AJ 2 GLU A 193 PRO A 194 0 SHEET 2 AJ 2 GLY A 202 ILE A 203 -1 O ILE A 203 N GLU A 193 SHEET 1 AK 2 HIS A 206 CYS A 209 0 SHEET 2 AK 2 GLU A 236 GLU A 239 -1 O GLU A 236 N CYS A 209 SHEET 1 AL 2 TYR A 274 GLY A 275 0 SHEET 2 AL 2 LEU A 282 ASP A 283 1 O LEU A 282 N GLY A 275 SHEET 1 AM 2 ALA A 316 LEU A 318 0 SHEET 2 AM 2 TYR A 321 GLY A 323 -1 O TYR A 321 N LEU A 318 SSBOND 1 CYS A 4 CYS A 72 1555 1555 2.04 SSBOND 2 CYS A 19 CYS A 25 1555 1555 2.06 SSBOND 3 CYS A 50 CYS A 71 1555 1555 2.02 SSBOND 4 CYS A 61 CYS A 67 1555 1555 2.04 SSBOND 5 CYS A 138 CYS A 397 1555 1555 2.05 SSBOND 6 CYS A 172 CYS A 210 1555 1555 2.04 SSBOND 7 CYS A 176 CYS A 209 1555 1555 2.02 SSBOND 8 CYS A 230 CYS A 256 1555 1555 2.04 SSBOND 9 CYS A 238 CYS A 243 1555 1555 2.02 SSBOND 10 CYS A 261 CYS A 331 1555 1555 2.04 LINK C PCA A 1 N SER A 2 1555 1555 1.33 LINK ND2 ASN A 270 C1 NAG A1437 1555 1555 1.44 LINK O4 XYP B 1 C1 XYP B 2 1555 1555 1.33 LINK O4 XYP B 2 C1 XYP B 3 1555 1555 1.34 LINK O4 XYP B 3 C1 XYP B 4 1555 1555 1.33 LINK O4 BGC C 1 C1 GAL C 2 1555 1555 1.43 LINK NE2 HIS A 206 CO CO A1435 1555 1555 2.06 LINK OE2 GLU A 239 CO CO A1435 1555 1555 2.05 LINK OE2 GLU A 295 CO CO A1436 1555 1555 2.25 LINK OE1 GLU A 295 CO CO A1436 1555 1555 2.18 LINK OE2 GLU A 295 CO CO A1436 3657 1555 2.26 LINK OE1 GLU A 295 CO CO A1436 3657 1555 2.18 LINK OE2 GLU A 325 CO CO A1436 3657 1555 2.03 LINK OE2 GLU A 325 CO CO A1436 1555 1555 2.02 LINK CO CO A1435 O HOH A2349 1555 1555 2.51 LINK CO CO A1435 O HOH A2350 1555 1555 2.49 LINK CO CO A1435 O HOH A2377 1555 1555 2.30 CISPEP 1 TYR A 381 PRO A 382 0 -9.20 CRYST1 83.232 83.093 110.089 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012015 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012035 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009084 0.00000 HETATM 1 N PCA A 1 38.647 56.959 66.781 1.00 14.90 N HETATM 2 CA PCA A 1 38.310 58.125 65.975 1.00 14.79 C HETATM 3 CB PCA A 1 37.292 58.863 66.834 1.00 14.86 C HETATM 4 CG PCA A 1 37.548 58.410 68.261 1.00 15.20 C HETATM 5 CD PCA A 1 38.330 57.135 68.064 1.00 15.13 C HETATM 6 OE PCA A 1 38.614 56.377 68.971 1.00 16.62 O HETATM 7 C PCA A 1 39.487 59.034 65.776 1.00 14.68 C HETATM 8 O PCA A 1 40.401 59.054 66.616 1.00 15.00 O