HEADER TRANSPORT PROTEIN 08-NOV-14 4D64 TITLE STRUCTURE OF PORIN OMP-PST1 FROM P. STUARTII; THE CRYSTALLOGRAPHIC TITLE 2 SYMMETRY GENERATES A DIMER OF TRIMERS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PORIN 1; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PROVIDENCIA STUARTII; SOURCE 3 ORGANISM_TAXID: 588; SOURCE 4 ATCC: 29914; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: DELTA-OMP8; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PG_OMP-PST1 KEYWDS TRANSPORT PROTEIN, BACTERIAL JUNCTION, STERIC-ZIPPER, DIMER OF KEYWDS 2 TRIMERS EXPDTA X-RAY DIFFRACTION AUTHOR C.NASRALLAH,J.P.COLLETIER REVDAT 4 20-DEC-23 4D64 1 REMARK REVDAT 3 18-APR-18 4D64 1 JRNL REVDAT 2 21-FEB-18 4D64 1 JRNL REVDAT 1 09-MAR-16 4D64 0 JRNL AUTH M.EL-KHATIB,C.NASRALLAH,J.LOPES,Q.T.TRAN,G.TETREAU, JRNL AUTH 2 H.BASBOUS,D.FENEL,B.GALLET,M.LETHIER,J.M.BOLLA,J.M.PAGES, JRNL AUTH 3 M.VIVAUDOU,M.WEIK,M.WINTERHALTER,J.P.COLLETIER JRNL TITL PORIN SELF-ASSOCIATION ENABLES CELL-TO-CELL CONTACT JRNL TITL 2 INPROVIDENCIA STUARTIIFLOATING COMMUNITIES. JRNL REF PROC. NATL. ACAD. SCI. V. 115 E2220 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29476011 JRNL DOI 10.1073/PNAS.1714582115 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH W.SONG,H.BAJAJ,C.NASRALLAH,H.JIANG,M.WINTERHALTER, REMARK 1 AUTH 2 J.COLLETIER,Y.XU REMARK 1 TITL UNDERSTANDING VOLTAGE GATING OF PROVIDENCIA STUARTII PORINS REMARK 1 TITL 2 AT ATOMIC LEVEL. REMARK 1 REF PLOS ONE V. 11 04255 2015 REMARK 1 REFN ESSN 1932-6203 REMARK 1 PMID 25955156 REMARK 1 DOI 10.1371/JOURNAL.PCBI.1004255 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 3 NUMBER OF REFLECTIONS : 27270 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1364 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.2565 - 6.8800 0.86 2480 131 0.2294 0.2418 REMARK 3 2 6.8800 - 5.4669 0.90 2555 135 0.2028 0.2465 REMARK 3 3 5.4669 - 4.7776 0.91 2596 136 0.1641 0.2112 REMARK 3 4 4.7776 - 4.3416 0.91 2567 136 0.1597 0.2209 REMARK 3 5 4.3416 - 4.0308 0.92 2605 137 0.1804 0.2456 REMARK 3 6 4.0308 - 3.7934 0.92 2622 138 0.1998 0.2556 REMARK 3 7 3.7934 - 3.6036 0.92 2591 136 0.2086 0.3024 REMARK 3 8 3.6036 - 3.4469 0.92 2597 137 0.2300 0.3000 REMARK 3 9 3.4469 - 3.3143 0.93 2636 139 0.2630 0.3102 REMARK 3 10 3.3143 - 3.2000 0.93 2657 139 0.3027 0.3850 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.24 REMARK 3 B_SOL : 3.91 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.990 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.41200 REMARK 3 B22 (A**2) : -8.46210 REMARK 3 B33 (A**2) : -0.94990 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 19.18760 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 8472 REMARK 3 ANGLE : 1.007 11444 REMARK 3 CHIRALITY : 0.074 1158 REMARK 3 PLANARITY : 0.004 1526 REMARK 3 DIHEDRAL : 15.243 3022 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 1:86) REMARK 3 ORIGIN FOR THE GROUP (A): -22.5656 30.3572 11.3822 REMARK 3 T TENSOR REMARK 3 T11: 0.6034 T22: 0.6504 REMARK 3 T33: 0.4441 T12: -0.0253 REMARK 3 T13: 0.0043 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 2.3834 L22: 1.6510 REMARK 3 L33: 1.1927 L12: -0.4863 REMARK 3 L13: 1.1717 L23: -0.1640 REMARK 3 S TENSOR REMARK 3 S11: -0.0218 S12: 0.3802 S13: -0.0590 REMARK 3 S21: -0.1582 S22: -0.0338 S23: -0.0490 REMARK 3 S31: 0.3962 S32: -0.1083 S33: 0.1163 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 87:260) REMARK 3 ORIGIN FOR THE GROUP (A): -26.5825 12.8999 18.8737 REMARK 3 T TENSOR REMARK 3 T11: 0.8639 T22: 0.6466 REMARK 3 T33: 0.6586 T12: -0.0022 REMARK 3 T13: 0.1332 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 1.7956 L22: 1.1443 REMARK 3 L33: 2.0044 L12: 0.2560 REMARK 3 L13: 1.2658 L23: 0.1597 REMARK 3 S TENSOR REMARK 3 S11: -0.1740 S12: -0.1833 S13: -0.2727 REMARK 3 S21: 0.0479 S22: 0.0444 S23: -0.0741 REMARK 3 S31: 0.5233 S32: -0.1271 S33: 0.1582 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 261:352) REMARK 3 ORIGIN FOR THE GROUP (A): -41.5970 20.6061 9.6254 REMARK 3 T TENSOR REMARK 3 T11: 0.6549 T22: 0.7700 REMARK 3 T33: 0.5675 T12: -0.1220 REMARK 3 T13: -0.0360 T23: -0.1679 REMARK 3 L TENSOR REMARK 3 L11: 1.6781 L22: 2.2821 REMARK 3 L33: 2.0015 L12: -0.0519 REMARK 3 L13: 0.2232 L23: -0.7655 REMARK 3 S TENSOR REMARK 3 S11: 0.2079 S12: -0.1939 S13: 0.1098 REMARK 3 S21: 0.0518 S22: 0.0766 S23: 0.5937 REMARK 3 S31: -0.0441 S32: -0.2232 S33: -0.2647 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN C AND (RESSEQ 1:86) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8169 38.2948 20.2448 REMARK 3 T TENSOR REMARK 3 T11: 0.4501 T22: 0.7758 REMARK 3 T33: 0.4903 T12: 0.0679 REMARK 3 T13: -0.0496 T23: -0.0479 REMARK 3 L TENSOR REMARK 3 L11: 2.0451 L22: 1.8130 REMARK 3 L33: 0.6237 L12: -0.5501 REMARK 3 L13: 0.7987 L23: 0.0382 REMARK 3 S TENSOR REMARK 3 S11: 0.0896 S12: -0.0050 S13: 0.2055 REMARK 3 S21: 0.0902 S22: 0.1274 S23: 0.0385 REMARK 3 S31: 0.0663 S32: 0.2323 S33: -0.1811 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN C AND (RESSEQ 87:352) REMARK 3 ORIGIN FOR THE GROUP (A): -1.5063 41.2336 36.1315 REMARK 3 T TENSOR REMARK 3 T11: 0.5032 T22: 1.0026 REMARK 3 T33: 0.5367 T12: 0.0121 REMARK 3 T13: -0.0852 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 1.4887 L22: 2.0871 REMARK 3 L33: 1.1162 L12: -0.9282 REMARK 3 L13: -0.2536 L23: 0.2899 REMARK 3 S TENSOR REMARK 3 S11: -0.1077 S12: -0.4488 S13: -0.0032 REMARK 3 S21: 0.3908 S22: 0.1876 S23: -0.1390 REMARK 3 S31: 0.0597 S32: 0.5792 S33: -0.0971 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 1:86) REMARK 3 ORIGIN FOR THE GROUP (A): -22.0788 48.4387 11.8144 REMARK 3 T TENSOR REMARK 3 T11: 0.5728 T22: 0.7292 REMARK 3 T33: 0.6894 T12: -0.1071 REMARK 3 T13: 0.1239 T23: 0.0224 REMARK 3 L TENSOR REMARK 3 L11: 2.5791 L22: 2.3523 REMARK 3 L33: 1.8256 L12: 0.6553 REMARK 3 L13: 1.7775 L23: 0.6179 REMARK 3 S TENSOR REMARK 3 S11: -0.1780 S12: 0.3448 S13: -0.1540 REMARK 3 S21: -0.4835 S22: 0.3064 S23: -0.4252 REMARK 3 S31: -0.0945 S32: 0.8983 S33: -0.1525 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 87:352) REMARK 3 ORIGIN FOR THE GROUP (A): -35.2058 60.1169 13.8386 REMARK 3 T TENSOR REMARK 3 T11: 0.6580 T22: 0.5852 REMARK 3 T33: 0.7166 T12: 0.0297 REMARK 3 T13: 0.1127 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 1.0505 L22: 1.9820 REMARK 3 L33: 1.5466 L12: 0.4481 REMARK 3 L13: 0.0595 L23: -0.3282 REMARK 3 S TENSOR REMARK 3 S11: 0.2696 S12: -0.0756 S13: 0.3966 REMARK 3 S21: 0.1923 S22: -0.1357 S23: 0.4134 REMARK 3 S31: -0.2861 S32: -0.1872 S33: -0.0884 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN C REMARK 3 SELECTION : CHAIN A REMARK 3 ATOM PAIRS NUMBER : 2721 REMARK 3 RMSD : 0.051 REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: CHAIN C REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 2739 REMARK 3 RMSD : 0.045 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4D64 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1290062269. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27279 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 200 DATA REDUNDANCY : 2.680 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.9800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.66 REMARK 200 R MERGE FOR SHELL (I) : 0.59000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: MODELLER-MODEL OF OMP-PST1 BASED ON PDB ENTRY 1OPF REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG6000 MME, 0.1 M BUFFER MES REMARK 280 PH6.5, 0.1 M MGCL2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 75.76000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 71.01000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 75.76000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 71.01000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 117 OH TYR B 303 2.07 REMARK 500 NH2 ARG C 131 O LYS C 170 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 26 69.40 -114.31 REMARK 500 LYS A 68 -140.64 -112.04 REMARK 500 LEU A 113 -53.47 -133.75 REMARK 500 TRP A 114 -143.83 -83.32 REMARK 500 PHE A 125 -126.56 58.63 REMARK 500 SER A 128 -155.96 -163.31 REMARK 500 ASP A 160 -72.58 63.82 REMARK 500 GLU A 211 -59.91 56.46 REMARK 500 THR A 249 -66.63 -128.53 REMARK 500 ASP A 296 -83.22 -110.61 REMARK 500 LYS A 302 105.42 -162.41 REMARK 500 ASN A 330 -169.11 -126.58 REMARK 500 LYS B 6 -141.24 -163.22 REMARK 500 ALA B 26 70.46 -116.63 REMARK 500 LYS B 68 -141.60 -113.78 REMARK 500 ALA B 80 91.49 -161.02 REMARK 500 ASP B 109 70.46 -100.61 REMARK 500 LEU B 113 -53.02 -135.88 REMARK 500 TRP B 114 -143.44 -82.52 REMARK 500 PHE B 125 -130.72 58.39 REMARK 500 SER B 128 -155.52 -163.76 REMARK 500 ASP B 160 -71.47 68.72 REMARK 500 TRP B 186 19.85 57.24 REMARK 500 GLU B 211 -116.26 55.80 REMARK 500 THR B 249 -67.42 -127.21 REMARK 500 ASP B 296 -81.23 -111.07 REMARK 500 LYS B 302 107.33 -162.85 REMARK 500 ALA C 26 68.72 -114.95 REMARK 500 LYS C 68 -141.44 -112.89 REMARK 500 ALA C 80 92.40 -160.80 REMARK 500 LEU C 113 -52.50 -134.61 REMARK 500 TRP C 114 -141.77 -83.23 REMARK 500 PHE C 125 -128.51 59.37 REMARK 500 SER C 128 -157.35 -163.42 REMARK 500 TYR C 144 -70.45 -68.06 REMARK 500 ASP C 160 -74.95 66.29 REMARK 500 GLU C 211 -3.64 55.79 REMARK 500 THR C 249 -65.61 -126.87 REMARK 500 ASP C 296 -79.26 -113.51 REMARK 500 LYS C 302 104.94 -164.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2004 DISTANCE = 6.28 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4D5W RELATED DB: PDB REMARK 900 STRUCTURE OF THE DIMERIZATION MOTIF BETWEEN FACING MONOMERS IN OMP- REMARK 900 PST1 DIMERS OF TRIMERS (206-GVVTSE- 211, STERIC ZIPPER OF CLASS I) REMARK 900 RELATED ID: 4D5X RELATED DB: PDB REMARK 900 STRUCTURE OF THE DIMERIZATION MOTIF BETWEEN FACING MONOMERS IN OMP- REMARK 900 PST2 DIMERS OF TRIMERS (283-LGNY-286 ; STERIC ZIPPER OF CLASS III) REMARK 900 RELATED ID: 4D65 RELATED DB: PDB REMARK 900 STRUCTURE OF PORIN OMP-PST2 FROM P. STUARTII;THE ASYMMETRIC UNIT REMARK 900 CONTAINS A DIMER OF TRIMERS. DBREF 4D64 A 1 352 UNP E3U904 E3U904_PROST 23 374 DBREF 4D64 B 1 352 UNP E3U904 E3U904_PROST 23 374 DBREF 4D64 C 1 352 UNP E3U904 E3U904_PROST 23 374 SEQRES 1 A 352 ALA GLU VAL TYR ASN LYS ASP GLY ASN LYS LEU ASP VAL SEQRES 2 A 352 TYR GLY LYS VAL ASP VAL ARG HIS TYR PHE ALA SER ALA SEQRES 3 A 352 ASP LYS GLY LYS LYS SER GLU ASP GLY ASP ASP SER ARG SEQRES 4 A 352 VAL ARG LEU GLY VAL LYS GLY ASP THR GLN ILE THR ASP SEQRES 5 A 352 GLN LEU THR GLY PHE GLY ARG PHE GLU TRP GLU THR LYS SEQRES 6 A 352 THR ASN LYS ALA GLU ASN GLU GLY GLU ASN LYS ASN ARG SEQRES 7 A 352 LEU ALA TYR ALA GLY LEU LYS PHE ALA ASP PHE GLY SER SEQRES 8 A 352 ILE ASP TYR GLY ARG ASN TYR GLY VAL VAL TYR ASP THR SEQRES 9 A 352 ASN ALA TRP THR ASP VAL PHE PRO LEU TRP GLY ALA ASP SEQRES 10 A 352 THR MET ALA GLN THR ASP ASN PHE MET THR SER ARG ASN SEQRES 11 A 352 ARG ASN LEU LEU THR TYR ARG ASN ASN ASN ALA PHE GLY SEQRES 12 A 352 TYR VAL ASP GLY LEU SER PHE ALA LEU GLN TYR GLN GLY SEQRES 13 A 352 LYS ASN GLY ASP ASN ASN LYS SER SER ALA GLY MET ALA SEQRES 14 A 352 LYS ASP ASN GLY ASP GLY TYR GLY PHE SER THR ALA TYR SEQRES 15 A 352 GLU LEU GLY TRP GLY VAL THR LEU GLY GLY GLY TYR SER SEQRES 16 A 352 SER SER SER ARG THR PRO ASN GLN LYS ALA GLY VAL VAL SEQRES 17 A 352 THR SER GLU GLY ASP SER TYR TYR SER ALA THR GLY LYS SEQRES 18 A 352 ARG ALA GLN ALA TRP ASN VAL GLY GLY LYS PHE ASP ALA SEQRES 19 A 352 ASN ASN VAL TYR LEU ALA ALA MET TYR GLY GLN THR GLN SEQRES 20 A 352 ASN THR SER ARG TYR GLY ASP LEU ASP LEU ILE ALA ASN SEQRES 21 A 352 LYS THR GLU ASN VAL GLU LEU VAL ALA GLN TYR LEU PHE SEQRES 22 A 352 ASP PHE GLY LEU LYS PRO SER ILE GLY TYR ASN GLN SER SEQRES 23 A 352 LYS GLY LYS ASN LEU GLY ASN GLY TYR ASP ASN GLN ASP SEQRES 24 A 352 LEU VAL LYS TYR ILE SER VAL GLY SER TYR TYR TYR PHE SEQRES 25 A 352 ASN LYS ASN MET SER ALA VAL VAL ASP TYR LYS ILE ASN SEQRES 26 A 352 LEU LEU LYS ASP ASN ASP PHE THR LYS GLU TYR GLY ILE SEQRES 27 A 352 ASN THR ASP ASN VAL LEU GLY LEU GLY LEU VAL TYR GLN SEQRES 28 A 352 PHE SEQRES 1 B 352 ALA GLU VAL TYR ASN LYS ASP GLY ASN LYS LEU ASP VAL SEQRES 2 B 352 TYR GLY LYS VAL ASP VAL ARG HIS TYR PHE ALA SER ALA SEQRES 3 B 352 ASP LYS GLY LYS LYS SER GLU ASP GLY ASP ASP SER ARG SEQRES 4 B 352 VAL ARG LEU GLY VAL LYS GLY ASP THR GLN ILE THR ASP SEQRES 5 B 352 GLN LEU THR GLY PHE GLY ARG PHE GLU TRP GLU THR LYS SEQRES 6 B 352 THR ASN LYS ALA GLU ASN GLU GLY GLU ASN LYS ASN ARG SEQRES 7 B 352 LEU ALA TYR ALA GLY LEU LYS PHE ALA ASP PHE GLY SER SEQRES 8 B 352 ILE ASP TYR GLY ARG ASN TYR GLY VAL VAL TYR ASP THR SEQRES 9 B 352 ASN ALA TRP THR ASP VAL PHE PRO LEU TRP GLY ALA ASP SEQRES 10 B 352 THR MET ALA GLN THR ASP ASN PHE MET THR SER ARG ASN SEQRES 11 B 352 ARG ASN LEU LEU THR TYR ARG ASN ASN ASN ALA PHE GLY SEQRES 12 B 352 TYR VAL ASP GLY LEU SER PHE ALA LEU GLN TYR GLN GLY SEQRES 13 B 352 LYS ASN GLY ASP ASN ASN LYS SER SER ALA GLY MET ALA SEQRES 14 B 352 LYS ASP ASN GLY ASP GLY TYR GLY PHE SER THR ALA TYR SEQRES 15 B 352 GLU LEU GLY TRP GLY VAL THR LEU GLY GLY GLY TYR SER SEQRES 16 B 352 SER SER SER ARG THR PRO ASN GLN LYS ALA GLY VAL VAL SEQRES 17 B 352 THR SER GLU GLY ASP SER TYR TYR SER ALA THR GLY LYS SEQRES 18 B 352 ARG ALA GLN ALA TRP ASN VAL GLY GLY LYS PHE ASP ALA SEQRES 19 B 352 ASN ASN VAL TYR LEU ALA ALA MET TYR GLY GLN THR GLN SEQRES 20 B 352 ASN THR SER ARG TYR GLY ASP LEU ASP LEU ILE ALA ASN SEQRES 21 B 352 LYS THR GLU ASN VAL GLU LEU VAL ALA GLN TYR LEU PHE SEQRES 22 B 352 ASP PHE GLY LEU LYS PRO SER ILE GLY TYR ASN GLN SER SEQRES 23 B 352 LYS GLY LYS ASN LEU GLY ASN GLY TYR ASP ASN GLN ASP SEQRES 24 B 352 LEU VAL LYS TYR ILE SER VAL GLY SER TYR TYR TYR PHE SEQRES 25 B 352 ASN LYS ASN MET SER ALA VAL VAL ASP TYR LYS ILE ASN SEQRES 26 B 352 LEU LEU LYS ASP ASN ASP PHE THR LYS GLU TYR GLY ILE SEQRES 27 B 352 ASN THR ASP ASN VAL LEU GLY LEU GLY LEU VAL TYR GLN SEQRES 28 B 352 PHE SEQRES 1 C 352 ALA GLU VAL TYR ASN LYS ASP GLY ASN LYS LEU ASP VAL SEQRES 2 C 352 TYR GLY LYS VAL ASP VAL ARG HIS TYR PHE ALA SER ALA SEQRES 3 C 352 ASP LYS GLY LYS LYS SER GLU ASP GLY ASP ASP SER ARG SEQRES 4 C 352 VAL ARG LEU GLY VAL LYS GLY ASP THR GLN ILE THR ASP SEQRES 5 C 352 GLN LEU THR GLY PHE GLY ARG PHE GLU TRP GLU THR LYS SEQRES 6 C 352 THR ASN LYS ALA GLU ASN GLU GLY GLU ASN LYS ASN ARG SEQRES 7 C 352 LEU ALA TYR ALA GLY LEU LYS PHE ALA ASP PHE GLY SER SEQRES 8 C 352 ILE ASP TYR GLY ARG ASN TYR GLY VAL VAL TYR ASP THR SEQRES 9 C 352 ASN ALA TRP THR ASP VAL PHE PRO LEU TRP GLY ALA ASP SEQRES 10 C 352 THR MET ALA GLN THR ASP ASN PHE MET THR SER ARG ASN SEQRES 11 C 352 ARG ASN LEU LEU THR TYR ARG ASN ASN ASN ALA PHE GLY SEQRES 12 C 352 TYR VAL ASP GLY LEU SER PHE ALA LEU GLN TYR GLN GLY SEQRES 13 C 352 LYS ASN GLY ASP ASN ASN LYS SER SER ALA GLY MET ALA SEQRES 14 C 352 LYS ASP ASN GLY ASP GLY TYR GLY PHE SER THR ALA TYR SEQRES 15 C 352 GLU LEU GLY TRP GLY VAL THR LEU GLY GLY GLY TYR SER SEQRES 16 C 352 SER SER SER ARG THR PRO ASN GLN LYS ALA GLY VAL VAL SEQRES 17 C 352 THR SER GLU GLY ASP SER TYR TYR SER ALA THR GLY LYS SEQRES 18 C 352 ARG ALA GLN ALA TRP ASN VAL GLY GLY LYS PHE ASP ALA SEQRES 19 C 352 ASN ASN VAL TYR LEU ALA ALA MET TYR GLY GLN THR GLN SEQRES 20 C 352 ASN THR SER ARG TYR GLY ASP LEU ASP LEU ILE ALA ASN SEQRES 21 C 352 LYS THR GLU ASN VAL GLU LEU VAL ALA GLN TYR LEU PHE SEQRES 22 C 352 ASP PHE GLY LEU LYS PRO SER ILE GLY TYR ASN GLN SER SEQRES 23 C 352 LYS GLY LYS ASN LEU GLY ASN GLY TYR ASP ASN GLN ASP SEQRES 24 C 352 LEU VAL LYS TYR ILE SER VAL GLY SER TYR TYR TYR PHE SEQRES 25 C 352 ASN LYS ASN MET SER ALA VAL VAL ASP TYR LYS ILE ASN SEQRES 26 C 352 LEU LEU LYS ASP ASN ASP PHE THR LYS GLU TYR GLY ILE SEQRES 27 C 352 ASN THR ASP ASN VAL LEU GLY LEU GLY LEU VAL TYR GLN SEQRES 28 C 352 PHE HET CA A3000 1 HETNAM CA CALCIUM ION FORMUL 4 CA CA 2+ FORMUL 5 HOH *160(H2 O) HELIX 1 1 VAL A 101 ALA A 106 1 6 HELIX 2 2 TRP A 107 ASP A 109 5 3 HELIX 3 3 ASN A 140 TYR A 144 5 5 HELIX 4 4 GLY A 167 ASP A 171 5 5 HELIX 5 5 THR A 200 ALA A 205 1 6 HELIX 6 6 ASN A 330 GLY A 337 1 8 HELIX 7 7 VAL B 101 ALA B 106 1 6 HELIX 8 8 TRP B 107 ASP B 109 5 3 HELIX 9 9 THR B 200 ALA B 205 1 6 HELIX 10 10 ASN B 330 TYR B 336 1 7 HELIX 11 11 VAL C 101 ALA C 106 1 6 HELIX 12 12 TRP C 107 ASP C 109 5 3 HELIX 13 13 ASN C 140 TYR C 144 5 5 HELIX 14 14 GLY C 167 ASP C 171 5 5 HELIX 15 15 THR C 200 ALA C 205 1 6 HELIX 16 16 ASN C 330 TYR C 336 1 7 SHEET 1 AA 2 GLU A 2 LYS A 6 0 SHEET 2 AA 2 ASN A 9 ALA A 24 -1 O ASN A 9 N LYS A 6 SHEET 1 AB 2 GLY A 35 ASP A 36 0 SHEET 2 AB 2 ASN A 9 ALA A 24 1 O TYR A 22 N GLY A 35 SHEET 1 AC 2 VAL A 207 SER A 210 0 SHEET 2 AC 2 ASP A 213 TYR A 216 -1 O ASP A 213 N SER A 210 SHEET 1 AD 2 ARG A 251 TYR A 252 0 SHEET 2 AD 2 LEU A 257 ILE A 258 -1 O LEU A 257 N TYR A 252 SHEET 1 BA 2 GLU B 2 TYR B 4 0 SHEET 2 BA 2 ASN B 9 PHE B 23 -1 O LEU B 11 N VAL B 3 SHEET 1 BB 2 GLY B 35 ASP B 36 0 SHEET 2 BB 2 ASN B 9 PHE B 23 1 O TYR B 22 N GLY B 35 SHEET 1 BC 2 VAL B 207 SER B 210 0 SHEET 2 BC 2 ASP B 213 TYR B 216 -1 O ASP B 213 N SER B 210 SHEET 1 BD 2 ARG B 251 TYR B 252 0 SHEET 2 BD 2 LEU B 257 ILE B 258 -1 O LEU B 257 N TYR B 252 SHEET 1 CA 2 GLU C 2 LYS C 6 0 SHEET 2 CA 2 ASN C 9 PHE C 23 -1 O ASN C 9 N LYS C 6 SHEET 1 CB 2 GLY C 35 ASP C 36 0 SHEET 2 CB 2 ASN C 9 PHE C 23 1 O TYR C 22 N GLY C 35 SHEET 1 CC 2 VAL C 207 SER C 210 0 SHEET 2 CC 2 ASP C 213 TYR C 216 -1 O ASP C 213 N SER C 210 SHEET 1 CD 2 ARG C 251 TYR C 252 0 SHEET 2 CD 2 LEU C 257 ILE C 258 -1 O LEU C 257 N TYR C 252 CRYST1 151.520 142.020 113.320 90.00 131.00 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006600 0.000000 0.005737 0.00000 SCALE2 0.000000 0.007041 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011693 0.00000