HEADER HYDROLASE 19-NOV-14 4D70 TITLE STRUCTURAL, BIOPHYSICAL AND BIOCHEMICAL ANALYSES OF A CLOSTRIDIUM TITLE 2 PERFRINGENS SORTASE D5 TRANSPEPTIDASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SORTASE FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 23-187; COMPND 5 SYNONYM: SORTASE; COMPND 6 EC: 3.4.22.70; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: THE FIRST 22 AMINO ACIDS WERE REMOVED AND A HIS-TAG COMPND 9 WAS ENGINEERED AT THE N-TERMINAL DOMAIN TO AID IN PURIFICATION. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PERFRINGENS; SOURCE 3 ORGANISM_TAXID: 1502; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.SURYADINATA,S.SEABROOK,T.E.ADAMS,S.D.NUTTALL,T.S.PEAT REVDAT 3 20-DEC-23 4D70 1 SHEET REVDAT 2 15-MAY-19 4D70 1 REMARK REVDAT 1 15-JUL-15 4D70 0 JRNL AUTH R.SURYADINATA,S.A.SEABROOK,T.E.ADAMS,S.D.NUTTALL,T.S.PEAT JRNL TITL STRUCTURAL AND BIOCHEMICAL ANALYSES OF A CLOSTRIDIUM JRNL TITL 2 PERFRINGENS SORTASE D TRANSPEPTIDASE JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 71 1505 2015 JRNL REFN ISSN 0907-4449 JRNL PMID 26143922 JRNL DOI 10.1107/S1399004715009219 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 22304 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1214 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1568 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2526 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 95 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.08000 REMARK 3 B22 (A**2) : -0.85000 REMARK 3 B33 (A**2) : -0.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.40000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.172 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.150 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.111 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.059 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2630 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2530 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3556 ; 1.687 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5860 ; 1.227 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 334 ; 5.745 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 133 ;40.917 ;26.842 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 509 ;14.053 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ; 8.386 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 413 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3034 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 554 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1318 ; 3.526 ; 3.856 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1317 ; 3.527 ; 3.855 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1658 ; 4.474 ; 6.455 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1659 ; 4.474 ; 6.456 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1312 ; 5.160 ; 4.670 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1313 ; 5.158 ; 4.670 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1899 ; 7.437 ; 7.506 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 11291 ; 8.330 ;16.416 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 11249 ; 8.322 ;16.400 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 27 186 B 27 186 9552 0.15 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 186 REMARK 3 ORIGIN FOR THE GROUP (A): 15.9700 15.7710 7.5421 REMARK 3 T TENSOR REMARK 3 T11: 0.0258 T22: 0.0918 REMARK 3 T33: 0.0127 T12: -0.0344 REMARK 3 T13: -0.0058 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 0.8071 L22: 0.6780 REMARK 3 L33: 1.1391 L12: -0.0673 REMARK 3 L13: 0.3583 L23: -0.0379 REMARK 3 S TENSOR REMARK 3 S11: -0.0428 S12: 0.2069 S13: 0.0271 REMARK 3 S21: -0.0582 S22: 0.1266 S23: 0.0024 REMARK 3 S31: 0.0708 S32: 0.0043 S33: -0.0838 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 27 B 186 REMARK 3 ORIGIN FOR THE GROUP (A): 35.1003 13.2299 38.0139 REMARK 3 T TENSOR REMARK 3 T11: 0.0192 T22: 0.0406 REMARK 3 T33: 0.0443 T12: -0.0126 REMARK 3 T13: 0.0187 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 1.0044 L22: 0.7304 REMARK 3 L33: 0.3709 L12: -0.3123 REMARK 3 L13: 0.2851 L23: -0.1233 REMARK 3 S TENSOR REMARK 3 S11: 0.0442 S12: -0.1391 S13: -0.0209 REMARK 3 S21: 0.0563 S22: -0.0294 S23: 0.0418 REMARK 3 S31: -0.0261 S32: -0.0046 S33: -0.0148 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED REMARK 4 REMARK 4 4D70 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1290062343. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91910 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23533 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 47.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.63000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3G66 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE PROTEIN CONCENTRATION WAS 20 MG/ML REMARK 280 AND THE RESERVOIR CONDITIONS WERE 0.2M AMMONIUM ACETATE, 25% PEG REMARK 280 3350, 0.1M BIS-TRIS CHLORIDE AT PH 5.5 AND INCUBATED AT 8C., REMARK 280 VAPOR DIFFUSION, TEMPERATURE 281K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.79100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 SER A 12 REMARK 465 SER A 13 REMARK 465 GLY A 14 REMARK 465 LEU A 15 REMARK 465 VAL A 16 REMARK 465 PRO A 17 REMARK 465 ARG A 18 REMARK 465 GLY A 19 REMARK 465 SER A 20 REMARK 465 HIS A 21 REMARK 465 MET A 22 REMARK 465 GLY A 23 REMARK 465 LYS A 24 REMARK 465 LEU A 25 REMARK 465 TYR A 26 REMARK 465 LYS A 27 REMARK 465 MET B 2 REMARK 465 GLY B 3 REMARK 465 SER B 4 REMARK 465 SER B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 HIS B 10 REMARK 465 HIS B 11 REMARK 465 SER B 12 REMARK 465 SER B 13 REMARK 465 GLY B 14 REMARK 465 LEU B 15 REMARK 465 VAL B 16 REMARK 465 PRO B 17 REMARK 465 ARG B 18 REMARK 465 GLY B 19 REMARK 465 SER B 20 REMARK 465 HIS B 21 REMARK 465 MET B 22 REMARK 465 GLY B 23 REMARK 465 LYS B 24 REMARK 465 LEU B 25 REMARK 465 TYR B 26 REMARK 465 LYS B 27 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 28 OG REMARK 470 GLU A 116 CG CD OE1 OE2 REMARK 470 SER B 28 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2010 O HOH B 2043 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 29 -73.62 -103.52 REMARK 500 GLU A 55 -11.88 81.95 REMARK 500 THR A 74 -154.65 -153.96 REMARK 500 ALA A 96 153.52 -49.15 REMARK 500 ASN A 111 -124.41 52.32 REMARK 500 THR B 74 -155.56 -149.26 REMARK 500 ASN B 111 -126.91 52.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE FIRST 22 AMINO ACIDS WERE REMOVED AND REPLACED WITH A REMARK 999 N-TERMINAL HIS-TAG. DBREF 4D70 A 23 187 UNP Q0TUL5 Q0TUL5_CLOP1 23 187 DBREF 4D70 B 23 187 UNP Q0TUL5 Q0TUL5_CLOP1 23 187 SEQADV 4D70 MET A 2 UNP Q0TUL5 EXPRESSION TAG SEQADV 4D70 GLY A 3 UNP Q0TUL5 EXPRESSION TAG SEQADV 4D70 SER A 4 UNP Q0TUL5 EXPRESSION TAG SEQADV 4D70 SER A 5 UNP Q0TUL5 EXPRESSION TAG SEQADV 4D70 HIS A 6 UNP Q0TUL5 EXPRESSION TAG SEQADV 4D70 HIS A 7 UNP Q0TUL5 EXPRESSION TAG SEQADV 4D70 HIS A 8 UNP Q0TUL5 EXPRESSION TAG SEQADV 4D70 HIS A 9 UNP Q0TUL5 EXPRESSION TAG SEQADV 4D70 HIS A 10 UNP Q0TUL5 EXPRESSION TAG SEQADV 4D70 HIS A 11 UNP Q0TUL5 EXPRESSION TAG SEQADV 4D70 SER A 12 UNP Q0TUL5 EXPRESSION TAG SEQADV 4D70 SER A 13 UNP Q0TUL5 EXPRESSION TAG SEQADV 4D70 GLY A 14 UNP Q0TUL5 EXPRESSION TAG SEQADV 4D70 LEU A 15 UNP Q0TUL5 EXPRESSION TAG SEQADV 4D70 VAL A 16 UNP Q0TUL5 EXPRESSION TAG SEQADV 4D70 PRO A 17 UNP Q0TUL5 EXPRESSION TAG SEQADV 4D70 ARG A 18 UNP Q0TUL5 EXPRESSION TAG SEQADV 4D70 GLY A 19 UNP Q0TUL5 EXPRESSION TAG SEQADV 4D70 SER A 20 UNP Q0TUL5 EXPRESSION TAG SEQADV 4D70 HIS A 21 UNP Q0TUL5 EXPRESSION TAG SEQADV 4D70 MET A 22 UNP Q0TUL5 EXPRESSION TAG SEQADV 4D70 MET B 2 UNP Q0TUL5 EXPRESSION TAG SEQADV 4D70 GLY B 3 UNP Q0TUL5 EXPRESSION TAG SEQADV 4D70 SER B 4 UNP Q0TUL5 EXPRESSION TAG SEQADV 4D70 SER B 5 UNP Q0TUL5 EXPRESSION TAG SEQADV 4D70 HIS B 6 UNP Q0TUL5 EXPRESSION TAG SEQADV 4D70 HIS B 7 UNP Q0TUL5 EXPRESSION TAG SEQADV 4D70 HIS B 8 UNP Q0TUL5 EXPRESSION TAG SEQADV 4D70 HIS B 9 UNP Q0TUL5 EXPRESSION TAG SEQADV 4D70 HIS B 10 UNP Q0TUL5 EXPRESSION TAG SEQADV 4D70 HIS B 11 UNP Q0TUL5 EXPRESSION TAG SEQADV 4D70 SER B 12 UNP Q0TUL5 EXPRESSION TAG SEQADV 4D70 SER B 13 UNP Q0TUL5 EXPRESSION TAG SEQADV 4D70 GLY B 14 UNP Q0TUL5 EXPRESSION TAG SEQADV 4D70 LEU B 15 UNP Q0TUL5 EXPRESSION TAG SEQADV 4D70 VAL B 16 UNP Q0TUL5 EXPRESSION TAG SEQADV 4D70 PRO B 17 UNP Q0TUL5 EXPRESSION TAG SEQADV 4D70 ARG B 18 UNP Q0TUL5 EXPRESSION TAG SEQADV 4D70 GLY B 19 UNP Q0TUL5 EXPRESSION TAG SEQADV 4D70 SER B 20 UNP Q0TUL5 EXPRESSION TAG SEQADV 4D70 HIS B 21 UNP Q0TUL5 EXPRESSION TAG SEQADV 4D70 MET B 22 UNP Q0TUL5 EXPRESSION TAG SEQRES 1 A 186 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 186 LEU VAL PRO ARG GLY SER HIS MET GLY LYS LEU TYR LYS SEQRES 3 A 186 SER SER VAL GLU LYS LYS THR LEU GLU GLU PHE LYS GLU SEQRES 4 A 186 LYS PHE ASN TYR SER GLU GLU GLU LYS LYS LYS THR LEU SEQRES 5 A 186 GLU GLU ILE LYS ASN GLY ASP GLY ILE ALA LEU ILE ASP SEQRES 6 A 186 ILE GLU LYS ILE GLY VAL HIS THR VAL ILE ALA GLU GLY SEQRES 7 A 186 SER THR LEU ASP VAL LEU GLU ASN ASN ILE GLY HIS PHE SEQRES 8 A 186 GLU ASN THR ALA MET PRO GLY GLU ASN GLY ASN PHE SER SEQRES 9 A 186 ILE ALA GLY HIS ARG ASN THR ILE ASN ASN GLU VAL PHE SEQRES 10 A 186 ARG ASN ILE ASP LYS LEU GLN VAL GLY ASP GLU ILE LYS SEQRES 11 A 186 ILE THR THR LEU THR ASP ILE PHE GLN TYR GLU ILE ASN SEQRES 12 A 186 GLU ILE PHE VAL THR SER PRO SER ASP THR ASP VAL LEU SEQRES 13 A 186 ASN GLN ASN LEU ASP GLU LYS THR MET THR ILE VAL THR SEQRES 14 A 186 CYS THR ASN ARG GLY LYS ASP ARG TYR ILE VAL LYS ALA SEQRES 15 A 186 LYS LEU ILE GLY SEQRES 1 B 186 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 186 LEU VAL PRO ARG GLY SER HIS MET GLY LYS LEU TYR LYS SEQRES 3 B 186 SER SER VAL GLU LYS LYS THR LEU GLU GLU PHE LYS GLU SEQRES 4 B 186 LYS PHE ASN TYR SER GLU GLU GLU LYS LYS LYS THR LEU SEQRES 5 B 186 GLU GLU ILE LYS ASN GLY ASP GLY ILE ALA LEU ILE ASP SEQRES 6 B 186 ILE GLU LYS ILE GLY VAL HIS THR VAL ILE ALA GLU GLY SEQRES 7 B 186 SER THR LEU ASP VAL LEU GLU ASN ASN ILE GLY HIS PHE SEQRES 8 B 186 GLU ASN THR ALA MET PRO GLY GLU ASN GLY ASN PHE SER SEQRES 9 B 186 ILE ALA GLY HIS ARG ASN THR ILE ASN ASN GLU VAL PHE SEQRES 10 B 186 ARG ASN ILE ASP LYS LEU GLN VAL GLY ASP GLU ILE LYS SEQRES 11 B 186 ILE THR THR LEU THR ASP ILE PHE GLN TYR GLU ILE ASN SEQRES 12 B 186 GLU ILE PHE VAL THR SER PRO SER ASP THR ASP VAL LEU SEQRES 13 B 186 ASN GLN ASN LEU ASP GLU LYS THR MET THR ILE VAL THR SEQRES 14 B 186 CYS THR ASN ARG GLY LYS ASP ARG TYR ILE VAL LYS ALA SEQRES 15 B 186 LYS LEU ILE GLY FORMUL 3 HOH *95(H2 O) HELIX 1 1 SER A 29 LYS A 41 1 13 HELIX 2 2 PHE A 42 TYR A 44 5 3 HELIX 3 3 SER A 45 GLU A 54 1 10 HELIX 4 4 GLU A 68 GLY A 71 5 4 HELIX 5 5 THR A 81 ASN A 88 1 8 HELIX 6 6 GLU A 116 ARG A 119 5 4 HELIX 7 7 ASN A 120 LEU A 124 5 5 HELIX 8 8 ASP A 153 ASN A 158 5 6 HELIX 9 9 SER B 28 LYS B 41 1 14 HELIX 10 10 PHE B 42 TYR B 44 5 3 HELIX 11 11 SER B 45 GLU B 55 1 11 HELIX 12 12 GLU B 68 GLY B 71 5 4 HELIX 13 13 THR B 81 ASN B 88 1 8 HELIX 14 14 GLU B 116 ARG B 119 5 4 HELIX 15 15 ASN B 120 LEU B 124 5 5 HELIX 16 16 ASP B 153 ASN B 158 5 6 SHEET 1 AA 9 GLY A 61 ILE A 67 0 SHEET 2 AA 9 VAL A 72 GLU A 78 -1 O VAL A 72 N ILE A 67 SHEET 3 AA 9 ILE A 89 HIS A 91 1 O ILE A 89 N ALA A 77 SHEET 4 AA 9 GLY A 102 ALA A 107 -1 O ALA A 107 N GLY A 90 SHEET 5 AA 9 LYS A 164 THR A 172 1 O THR A 165 N PHE A 104 SHEET 6 AA 9 ASP A 177 GLY A 187 -1 O ASP A 177 N THR A 172 SHEET 7 AA 9 ILE A 138 THR A 149 1 O GLN A 140 N ILE A 186 SHEET 8 AA 9 GLU A 129 THR A 133 -1 O ILE A 130 N TYR A 141 SHEET 9 AA 9 GLY A 61 ILE A 67 -1 O LEU A 64 N THR A 133 SHEET 1 AB 2 HIS A 109 ARG A 110 0 SHEET 2 AB 2 ILE A 113 ASN A 114 -1 O ILE A 113 N ARG A 110 SHEET 1 BA 2 HIS B 109 ARG B 110 0 SHEET 2 BA 2 ILE B 113 ASN B 114 -1 O ILE B 113 N ARG B 110 CRYST1 38.776 65.582 68.057 90.00 93.86 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025789 0.000000 0.001740 0.00000 SCALE2 0.000000 0.015248 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014727 0.00000