HEADER SIGNALING PROTEIN 27-NOV-14 4D7Q TITLE CRYSTAL STRUCTURE OF A CHIMERIC PROTEIN WITH THE SEC7 DOMAIN OF TITLE 2 LEGIONELLA PNEUMOPHILA RALF AND THE CAPPING DOMAIN OF RICKETTSIA TITLE 3 PROWAZEKII RALF COMPND MOL_ID: 1; COMPND 2 MOLECULE: RALF, PROLINE/BETAINE TRANSPORTER; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA, RICKETTSIA PROWAZEKII; SOURCE 3 ORGANISM_TAXID: 272624, 272947; SOURCE 4 STRAIN: PHILADELPHIA STRAIN 1, MADRID E; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDEST14 KEYWDS SIGNALING PROTEIN, GUANINE NUCLEOTIDE EXCHANGE FACTOR, BACTERIAL KEYWDS 2 PATHOGENS EXPDTA X-RAY DIFFRACTION AUTHOR M.FOLLY-KLAN,B.SANCERNE,E.ALIX,C.R.ROY,J.CHERFILS,V.CAMPANACCI REVDAT 5 20-DEC-23 4D7Q 1 REMARK REVDAT 4 15-MAR-17 4D7Q 1 SOURCE REVDAT 3 18-FEB-15 4D7Q 1 JRNL REVDAT 2 21-JAN-15 4D7Q 1 REMARK HETATM CONECT REVDAT 1 14-JAN-15 4D7Q 0 JRNL AUTH M.FOLLY-KLAN,B.SANCERNE,E.ALIX,C.R.ROY,J.CHERFILS, JRNL AUTH 2 V.CAMPANACCI JRNL TITL ON THE USE OF LEGIONELLA/RICKETTSIA CHIMERAS TO INVESTIGATE JRNL TITL 2 THE STRUCTURE AND REGULATION OF RICKETTSIA EFFECTOR RALF. JRNL REF J.STRUCT.BIOL. V. 189 98 2015 JRNL REFN ISSN 1047-8477 JRNL PMID 25498244 JRNL DOI 10.1016/J.JSB.2014.12.001 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 25873 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1314 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 13 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.08 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.58 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2855 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2225 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2711 REMARK 3 BIN R VALUE (WORKING SET) : 0.2199 REMARK 3 BIN FREE R VALUE : 0.2744 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.04 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 144 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2812 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 268 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.45260 REMARK 3 B22 (A**2) : -1.15350 REMARK 3 B33 (A**2) : -1.29910 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.211 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.183 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.155 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.172 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.151 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3004 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4090 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1094 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 97 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 400 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3004 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 371 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3724 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.06 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.14 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.66 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 13.3560 0.2013 12.7447 REMARK 3 T TENSOR REMARK 3 T11: -0.0314 T22: -0.0488 REMARK 3 T33: -0.0394 T12: -0.0022 REMARK 3 T13: 0.0001 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.3210 L22: 0.4708 REMARK 3 L33: 0.6562 L12: 0.0318 REMARK 3 L13: 0.1201 L23: -0.1703 REMARK 3 S TENSOR REMARK 3 S11: -0.0117 S12: -0.0396 S13: -0.0148 REMARK 3 S21: 0.0602 S22: 0.0071 S23: -0.0400 REMARK 3 S31: 0.0659 S32: -0.0350 S33: 0.0046 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4D7Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1290062290. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25893 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 38.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.400 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.380 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.35 REMARK 200 R MERGE FOR SHELL (I) : 0.90000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.470 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1XSZ REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM NITRATE, 0.1 M HEPES REMARK 280 PH 6.8-7.8, 15-25% PEG 3350, PH 7.3 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.15500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.55500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.72000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.55500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.15500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.72000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -5 REMARK 465 LYS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 10 CD NE CZ NH1 NH2 REMARK 480 LYS A 99 CE NZ REMARK 480 LYS A 226 CE NZ REMARK 480 GLU A 301 CB CG CD OE1 OE2 REMARK 480 ARG A 303 CB CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 98 C LYS A 99 N 0.248 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 98 O - C - N ANGL. DEV. = -11.7 DEGREES REMARK 500 LYS A 99 CA - C - N ANGL. DEV. = -14.2 DEGREES REMARK 500 LYS A 99 O - C - N ANGL. DEV. = 13.0 DEGREES REMARK 500 LEU A 194 CA - C - N ANGL. DEV. = 14.6 DEGREES REMARK 500 LEU A 194 CA - C - N ANGL. DEV. = 15.7 DEGREES REMARK 500 LEU A 194 O - C - N ANGL. DEV. = -10.2 DEGREES REMARK 500 LEU A 194 O - C - N ANGL. DEV. = -11.2 DEGREES REMARK 500 ARG A 227 CA - C - N ANGL. DEV. = 13.4 DEGREES REMARK 500 ARG A 227 O - C - N ANGL. DEV. = -15.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 98 LYS A 99 129.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG A 227 -12.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 1347 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 1348 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1349 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1350 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1351 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1352 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1353 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1354 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4D7R RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A CHIMERIC PROTEIN WITH THE SEC7 DOMAIN OF REMARK 900 RICKETTSIA PROWAZEKII RALF AND THE CAPPING DOMAIN OF LEGIONELLA REMARK 900 PNEUMOPHILA RALF REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS IS A CHIMERIC PROTEIN CONTAINING RESIDUES 2 TO 197 REMARK 999 FROM LEGIONELLA PNEUMOPHILA RALF (Q8RT31) AND RESIDUES 196 REMARK 999 TO 344 FROM RICKETTSIA PROWAZEKII RALF (M9TG84). THE N- REMARK 999 TERMINAL SEQUENCE MKHHHHH CORRESPONDS TO THE 6-HISTIDINE REMARK 999 TAG. THE D160Y MUTATION IS A CLONING ARTEFACT. DBREF 4D7Q A 2 190 UNP Q8RT31 Q8RT31_LEGPN 2 190 DBREF 4D7Q A 191 338 UNP M9TGB4 M9TGB4_RICPO 189 336 SEQADV 4D7Q MET A -5 UNP Q8RT31 EXPRESSION TAG SEQADV 4D7Q LYS A -4 UNP Q8RT31 EXPRESSION TAG SEQADV 4D7Q HIS A -3 UNP Q8RT31 EXPRESSION TAG SEQADV 4D7Q HIS A -2 UNP Q8RT31 EXPRESSION TAG SEQADV 4D7Q HIS A -1 UNP Q8RT31 EXPRESSION TAG SEQADV 4D7Q HIS A 0 UNP Q8RT31 EXPRESSION TAG SEQADV 4D7Q HIS A 1 UNP Q8RT31 EXPRESSION TAG SEQADV 4D7Q TYR A 160 UNP Q8RT31 ASP 160 ENGINEERED MUTATION SEQADV 4D7Q GLU A 193 UNP M9TGB4 LYS 191 ENGINEERED MUTATION SEQADV 4D7Q LYS A 339 UNP M9TGB4 EXPRESSION TAG SEQADV 4D7Q SER A 340 UNP M9TGB4 EXPRESSION TAG SEQADV 4D7Q GLN A 341 UNP M9TGB4 EXPRESSION TAG SEQADV 4D7Q TYR A 342 UNP M9TGB4 EXPRESSION TAG SEQADV 4D7Q ASP A 343 UNP M9TGB4 EXPRESSION TAG SEQADV 4D7Q ASN A 344 UNP M9TGB4 EXPRESSION TAG SEQADV 4D7Q ILE A 345 UNP M9TGB4 EXPRESSION TAG SEQADV 4D7Q ARG A 346 UNP M9TGB4 EXPRESSION TAG SEQRES 1 A 352 MET LYS HIS HIS HIS HIS HIS HIS PRO GLU ILE GLU LYS SEQRES 2 A 352 ALA GLN ARG GLU ILE ILE GLU ALA PHE ASN ALA LYS PRO SEQRES 3 A 352 LYS ASN GLY ILE ASN LYS ILE LYS GLU ILE CYS GLU GLN SEQRES 4 A 352 TYR LYS ILE SER PRO ASN GLU GLU ILE ALA GLU PHE PHE SEQRES 5 A 352 HIS GLN GLN ARG LYS ASN LEU ASP LEU GLU ALA VAL GLY SEQRES 6 A 352 ASP TYR LEU SER SER PRO GLU ALA GLU ASN GLN GLN VAL SEQRES 7 A 352 LEU LYS ALA PHE THR SER GLN MET ASN PHE ASN GLY GLN SEQRES 8 A 352 SER PHE VAL GLU GLY LEU ARG THR PHE LEU LYS THR PHE SEQRES 9 A 352 LYS LEU PRO GLY GLU ALA GLN LYS ILE ASP ARG LEU VAL SEQRES 10 A 352 GLN SER PHE SER GLY ALA TYR PHE GLN GLN ASN PRO ASP SEQRES 11 A 352 VAL VAL SER ASN ALA ASP ALA ALA TYR LEU LEU ALA PHE SEQRES 12 A 352 GLN THR ILE MET LEU ASN THR ASP LEU HIS ASN PRO SER SEQRES 13 A 352 ILE PRO GLU LYS ASN LYS MET THR VAL TYR GLY LEU LYS SEQRES 14 A 352 ARG ASN LEU ARG GLY GLY ASN ASN GLY GLY ASP PHE ASP SEQRES 15 A 352 ALA LYS PHE LEU GLU GLU LEU TYR SER GLU ILE LYS ALA SEQRES 16 A 352 LYS PRO PHE GLU LEU ASN PHE VAL ASP SER SER PRO GLY SEQRES 17 A 352 TYR GLN ILE ASN ASN ILE SER SER GLN ASN ASP LYS THR SEQRES 18 A 352 PHE LYS GLN LEU ASN GLN PHE LEU GLU GLU LYS ARG ASN SEQRES 19 A 352 ILE GLN ASN ILE PHE PRO LYS LEU GLN ASN ASN ASN LEU SEQRES 20 A 352 THR ILE GLU PHE LYS ASN PRO LYS THR PHE LEU SER LYS SEQRES 21 A 352 PHE THR GLY TYR LYS GLY SER VAL ILE ILE LYS ASP GLU SEQRES 22 A 352 LYS SER GLY ALA ALA GLU ILE GLN VAL TYR LYS PRO SER SEQRES 23 A 352 ILE PHE SER ARG TRP PHE LEU GLY GLU LYS SER LYS ILE SEQRES 24 A 352 ILE ILE GLN PRO LEU ARG GLU GLU GLY ARG GLN PRO SER SEQRES 25 A 352 GLU GLN SER LEU LYS LEU ALA ALA GLN ILE THR ALA SER SEQRES 26 A 352 PHE GLU THR LYS VAL THR SER ILE LYS ALA THR TYR ASP SEQRES 27 A 352 TYR LEU LYS GLU ASP LEU LYS SER GLN TYR ASP ASN ILE SEQRES 28 A 352 ARG HET EPE A1347 32 HET NO3 A1348 4 HET GOL A1349 14 HET GOL A1350 14 HET GOL A1351 14 HET GOL A1352 14 HET PEG A1353 17 HET PEG A1354 17 HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM NO3 NITRATE ION HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EPE HEPES HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 EPE C8 H18 N2 O4 S FORMUL 3 NO3 N O3 1- FORMUL 4 GOL 4(C3 H8 O3) FORMUL 8 PEG 2(C4 H10 O3) FORMUL 10 HOH *268(H2 O) HELIX 1 1 HIS A 2 ALA A 8 1 7 HELIX 2 2 ALA A 8 LYS A 19 1 12 HELIX 3 3 LYS A 19 LYS A 35 1 17 HELIX 4 4 SER A 37 GLN A 49 1 13 HELIX 5 5 ARG A 50 LEU A 53 5 4 HELIX 6 6 ASP A 54 SER A 63 1 10 HELIX 7 7 GLU A 66 GLN A 79 1 14 HELIX 8 8 SER A 86 THR A 97 1 12 HELIX 9 9 GLU A 103 ASN A 122 1 20 HELIX 10 10 ASN A 128 HIS A 147 1 20 HELIX 11 11 PRO A 152 LYS A 156 5 5 HELIX 12 12 THR A 158 LEU A 166 1 9 HELIX 13 13 ASP A 176 LYS A 190 1 15 HELIX 14 14 ASP A 213 GLU A 225 1 13 HELIX 15 15 PHE A 233 GLN A 237 5 5 HELIX 16 16 LYS A 249 GLY A 257 1 9 HELIX 17 17 SER A 283 GLY A 288 1 6 HELIX 18 18 SER A 306 PHE A 320 1 15 HELIX 19 19 LEU A 334 ARG A 346 1 13 SHEET 1 AA 6 THR A 242 LYS A 246 0 SHEET 2 AA 6 TYR A 258 LYS A 265 -1 O SER A 261 N LYS A 246 SHEET 3 AA 6 ALA A 271 TYR A 277 -1 O ALA A 272 N ILE A 264 SHEET 4 AA 6 SER A 291 PRO A 297 -1 O LYS A 292 N TYR A 277 SHEET 5 AA 6 GLY A 202 ILE A 208 -1 O TYR A 203 N ILE A 295 SHEET 6 AA 6 SER A 326 LYS A 328 -1 O SER A 326 N GLN A 204 SITE 1 AC1 8 ARG A 167 PHE A 196 ARG A 284 TRP A 285 SITE 2 AC1 8 PHE A 286 GLY A 288 HOH A2139 HOH A2228 SITE 1 AC2 4 PRO A 20 ASP A 60 ALA A 329 HOH A2068 SITE 1 AC3 9 GLN A 296 PRO A 297 ARG A 299 THR A 330 SITE 2 AC3 9 TYR A 331 HOH A2072 HOH A2233 HOH A2253 SITE 3 AC3 9 HOH A2267 SITE 1 AC4 5 SER A 64 GLU A 66 ASN A 69 TYR A 331 SITE 2 AC4 5 HOH A2071 SITE 1 AC5 9 SER A 86 PHE A 87 VAL A 88 VAL A 125 SITE 2 AC5 9 PHE A 179 GLU A 182 LEU A 183 GLU A 186 SITE 3 AC5 9 HOH A2268 SITE 1 AC6 7 PRO A 65 GLN A 105 GLU A 273 HOH A2102 SITE 2 AC6 7 HOH A2107 HOH A2234 HOH A2267 SITE 1 AC7 4 GLN A 105 ASP A 108 GLN A 112 LYS A 249 SITE 1 AC8 6 GLN A 112 SER A 115 ALA A 129 ASP A 130 SITE 2 AC8 6 TYR A 133 LYS A 249 CRYST1 40.310 77.440 119.110 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024808 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012913 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008396 0.00000