HEADER SIGNALING PROTEIN 01-DEC-14 4D7Y TITLE CRYSTAL STRUCTURE OF MOUSE C1QL1 GLOBULAR DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: C1Q-RELATED FACTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C1Q, UNP RESIDUES 125-258; COMPND 5 SYNONYM: C1Q AND TUMOR NECROSIS FACTOR-RELATED PROTEIN 14, C1Q/TNF-R COMPND 6 ELATED PROTEIN 14, CTRP14, COMPLEMENT COMPONENT 1Q SUBCOMPONENT-LIKE COMPND 7 1, C1QL1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 ORGAN: BRAIN; SOURCE 6 CELL: NEURON; SOURCE 7 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 8 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 10 EXPRESSION_SYSTEM_CELL_LINE: HEK-293T; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PHLSEC KEYWDS SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.KAKEGAWA,N.MITAKIDIS,E.MIURA,M.ABE,K.MATSUDA,Y.TAKEO,K.KOHDA, AUTHOR 2 J.MOTOHASHI,A.TAKAHASHI,S.NAGAO,S.MURAMATSU,M.WATANABE,K.SAKIMURA, AUTHOR 3 A.R.ARICESCU,M.YUZAKI REVDAT 3 20-DEC-23 4D7Y 1 REMARK LINK REVDAT 2 04-FEB-15 4D7Y 1 JRNL REVDAT 1 28-JAN-15 4D7Y 0 JRNL AUTH W.KAKEGAWA,N.MITAKIDIS,E.MIURA,M.ABE,K.MATSUDA,Y.TAKEO, JRNL AUTH 2 K.KOHDA,J.MOTOHASHI,A.TAKAHASHI,S.NAGAO,S.MURAMATSU, JRNL AUTH 3 M.WATANABE,K.SAKIMURA,A.R.ARICESCU,M.YUZAKI JRNL TITL ANTEROGRADE C1QL1 SIGNALING IS REQUIRED IN ORDER TO JRNL TITL 2 DETERMINE AND MAINTAIN A SINGLE-WINNER CLIMBING FIBER IN THE JRNL TITL 3 MOUSE CEREBELLUM JRNL REF NEURON V. 85 316 2015 JRNL REFN ISSN 0896-6273 JRNL PMID 25611509 JRNL DOI 10.1016/J.NEURON.2014.12.020 REMARK 2 REMARK 2 RESOLUTION. 1.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 20628 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1025 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.0495 - 2.7544 1.00 2791 154 0.1272 0.1458 REMARK 3 2 2.7544 - 2.1863 1.00 2803 136 0.1417 0.1849 REMARK 3 3 2.1863 - 1.9100 1.00 2847 128 0.1294 0.1608 REMARK 3 4 1.9100 - 1.7354 1.00 2790 127 0.1387 0.1513 REMARK 3 5 1.7354 - 1.6110 1.00 2767 160 0.1539 0.2005 REMARK 3 6 1.6110 - 1.5160 1.00 2805 164 0.1783 0.2093 REMARK 3 7 1.5160 - 1.4401 1.00 2800 156 0.2054 0.2550 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1059 REMARK 3 ANGLE : 1.096 1440 REMARK 3 CHIRALITY : 0.049 149 REMARK 3 PLANARITY : 0.004 191 REMARK 3 DIHEDRAL : 11.756 373 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 128 THROUGH 258 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.5486 27.5958 7.7109 REMARK 3 T TENSOR REMARK 3 T11: 0.0955 T22: 0.0907 REMARK 3 T33: 0.1004 T12: 0.0015 REMARK 3 T13: 0.0054 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.3112 L22: 0.4440 REMARK 3 L33: 0.1449 L12: 0.1305 REMARK 3 L13: 0.1620 L23: 0.0483 REMARK 3 S TENSOR REMARK 3 S11: -0.0096 S12: -0.0172 S13: -0.0566 REMARK 3 S21: 0.0057 S22: 0.0191 S23: 0.0235 REMARK 3 S31: 0.0637 S32: -0.0081 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4D7Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1290062450. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20630 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.440 REMARK 200 RESOLUTION RANGE LOW (A) : 43.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.88000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1C28 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.02M NICKEL(II) CHLORIDE HEXAHYDRATE, REMARK 280 0.02M MAGNESIUM CHLORIDE HEXAHYDRATE, 0.02M CADMIUM CHLORIDE REMARK 280 HYDRATE, 0.1M SODIUM ACETATE TRIHYDRATE PH 4.5, 24% W/V REMARK 280 POLYETHYLENE GLYCOL, MONOMETHYL ETHER 2,000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.04000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.65300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 21.97000 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 34.04000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 19.65300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 21.97000 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 34.04000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 19.65300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 21.97000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 39.30601 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 43.94000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 39.30601 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 43.94000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 39.30601 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 43.94000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -183.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 -34.04000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 58.95901 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 34.04000 REMARK 350 BIOMT2 3 0.866025 -0.500000 0.000000 58.95901 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CD CD A1259 LIES ON A SPECIAL POSITION. REMARK 375 CD CD A1260 LIES ON A SPECIAL POSITION. REMARK 375 NI NI A1261 LIES ON A SPECIAL POSITION. REMARK 375 NI NI A1262 LIES ON A SPECIAL POSITION. REMARK 375 CL CL A1263 LIES ON A SPECIAL POSITION. REMARK 375 CL CL A1265 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2034 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2045 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 122 REMARK 465 THR A 123 REMARK 465 GLY A 124 REMARK 465 THR A 125 REMARK 465 THR A 126 REMARK 465 VAL A 127 REMARK 465 GLY A 259 REMARK 465 THR A 260 REMARK 465 LYS A 261 REMARK 465 HIS A 262 REMARK 465 HIS A 263 REMARK 465 HIS A 264 REMARK 465 HIS A 265 REMARK 465 HIS A 266 REMARK 465 HIS A 267 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2076 O HOH A 2077 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 137 -61.28 74.21 REMARK 500 ASN A 154 51.25 -157.48 REMARK 500 ASP A 186 94.52 -168.38 REMARK 500 ASN A 197 -132.24 52.39 REMARK 500 ASN A 197 -133.07 52.39 REMARK 500 ASN A 243 -113.87 55.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1264 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 193 OD2 REMARK 620 2 ASP A 235 OD2 82.2 REMARK 620 3 HOH A2046 O 88.3 158.1 REMARK 620 4 HOH A2047 O 85.4 104.7 94.1 REMARK 620 5 HOH A2048 O 87.9 78.4 81.6 172.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A1262 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 208 OD2 REMARK 620 2 ASP A 208 OD2 93.1 REMARK 620 3 ASP A 208 OD2 89.3 92.9 REMARK 620 4 HOH A2062 O 85.5 174.5 81.8 REMARK 620 5 HOH A2062 O 177.4 88.7 88.8 92.5 REMARK 620 6 HOH A2062 O 85.2 92.7 172.4 92.5 96.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1259 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 210 OD1 REMARK 620 2 ASP A 210 OD2 49.3 REMARK 620 3 ASP A 210 OD1 120.1 84.0 REMARK 620 4 ASP A 210 OD2 137.0 88.3 49.4 REMARK 620 5 ASP A 210 OD2 83.9 88.2 136.9 88.2 REMARK 620 6 ASP A 210 OD1 119.9 136.8 120.0 83.9 49.3 REMARK 620 7 CL A1263 CL 90.9 126.6 91.0 126.5 126.3 90.8 REMARK 620 8 CL A1263 CL 90.9 126.6 90.9 126.5 126.4 90.9 0.1 REMARK 620 9 CL A1263 CL 90.8 126.5 91.0 126.6 126.4 90.8 0.1 0.1 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1260 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 214 OD1 REMARK 620 2 ASP A 214 OD1 106.7 REMARK 620 3 ASP A 214 OD1 106.7 106.7 REMARK 620 4 HOH A2068 O 77.6 89.1 161.1 REMARK 620 5 HOH A2068 O 89.1 161.1 77.6 84.1 REMARK 620 6 HOH A2068 O 161.1 77.6 89.1 84.1 84.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A1261 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 214 OD2 REMARK 620 2 ASP A 214 OD2 92.4 REMARK 620 3 ASP A 214 OD2 92.4 92.4 REMARK 620 4 HOH A2063 O 89.4 178.1 87.8 REMARK 620 5 HOH A2063 O 178.1 87.8 89.4 90.3 REMARK 620 6 HOH A2063 O 87.8 89.4 178.1 90.3 90.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 1259 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 1260 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 1261 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 1262 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1263 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1264 REMARK 999 REMARK 999 SEQUENCE REMARK 999 ETG AT THE N-TERMINUS AND GTKHHHHHH AT THE C-TERMINUS REMARK 999 ORIGINATE FROM THE EXPRESSION VECTOR. DBREF 4D7Y A 125 258 UNP O88992 C1QRF_MOUSE 125 258 SEQADV 4D7Y GLU A 122 UNP O88992 EXPRESSION TAG SEQADV 4D7Y THR A 123 UNP O88992 EXPRESSION TAG SEQADV 4D7Y GLY A 124 UNP O88992 EXPRESSION TAG SEQADV 4D7Y GLY A 259 UNP O88992 EXPRESSION TAG SEQADV 4D7Y THR A 260 UNP O88992 EXPRESSION TAG SEQADV 4D7Y LYS A 261 UNP O88992 EXPRESSION TAG SEQADV 4D7Y HIS A 262 UNP O88992 EXPRESSION TAG SEQADV 4D7Y HIS A 263 UNP O88992 EXPRESSION TAG SEQADV 4D7Y HIS A 264 UNP O88992 EXPRESSION TAG SEQADV 4D7Y HIS A 265 UNP O88992 EXPRESSION TAG SEQADV 4D7Y HIS A 266 UNP O88992 EXPRESSION TAG SEQADV 4D7Y HIS A 267 UNP O88992 EXPRESSION TAG SEQRES 1 A 146 GLU THR GLY THR THR VAL PRO ARG VAL ALA PHE TYR ALA SEQRES 2 A 146 GLY LEU LYS ASN PRO HIS GLU GLY TYR GLU VAL LEU LYS SEQRES 3 A 146 PHE ASP ASP VAL VAL THR ASN LEU GLY ASN ASN TYR ASP SEQRES 4 A 146 ALA ALA SER GLY LYS PHE THR CYS ASN ILE PRO GLY THR SEQRES 5 A 146 TYR PHE PHE THR TYR HIS VAL LEU MET ARG GLY GLY ASP SEQRES 6 A 146 GLY THR SER MET TRP ALA ASP LEU CYS LYS ASN GLY GLN SEQRES 7 A 146 VAL ARG ALA SER ALA ILE ALA GLN ASP ALA ASP GLN ASN SEQRES 8 A 146 TYR ASP TYR ALA SER ASN SER VAL ILE LEU HIS LEU ASP SEQRES 9 A 146 ALA GLY ASP GLU VAL PHE ILE LYS LEU ASP GLY GLY LYS SEQRES 10 A 146 ALA HIS GLY GLY ASN SER ASN LYS TYR SER THR PHE SER SEQRES 11 A 146 GLY PHE ILE ILE TYR SER ASP GLY THR LYS HIS HIS HIS SEQRES 12 A 146 HIS HIS HIS HET CD A1259 1 HET CD A1260 1 HET NI A1261 1 HET NI A1262 1 HET CL A1263 1 HET MG A1264 1 HET CL A1265 1 HETNAM CD CADMIUM ION HETNAM NI NICKEL (II) ION HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION FORMUL 2 CD 2(CD 2+) FORMUL 4 NI 2(NI 2+) FORMUL 6 CL 2(CL 1-) FORMUL 7 MG MG 2+ FORMUL 9 HOH *85(H2 O) SHEET 1 AA 5 ASP A 150 LEU A 155 0 SHEET 2 AA 5 ALA A 131 GLY A 135 -1 O ALA A 131 N LEU A 155 SHEET 3 AA 5 THR A 249 SER A 257 -1 O PHE A 250 N ALA A 134 SHEET 4 AA 5 GLY A 172 MET A 182 -1 O THR A 173 N ILE A 255 SHEET 5 AA 5 ASP A 214 LEU A 224 -1 O ASP A 214 N MET A 182 SHEET 1 AB 2 HIS A 140 GLU A 141 0 SHEET 2 AB 2 LYS A 238 ALA A 239 -1 O ALA A 239 N HIS A 140 SHEET 1 AC 2 GLU A 144 VAL A 145 0 SHEET 2 AC 2 GLU A 229 GLY A 236 -1 O LEU A 234 N GLU A 144 SHEET 1 AD 2 PHE A 166 THR A 167 0 SHEET 2 AD 2 GLU A 229 GLY A 236 1 O VAL A 230 N PHE A 166 SHEET 1 AE 4 GLN A 199 GLN A 207 0 SHEET 2 AE 4 SER A 189 LYS A 196 -1 O MET A 190 N ALA A 206 SHEET 3 AE 4 GLU A 229 GLY A 236 -1 O PHE A 231 N CYS A 195 SHEET 4 AE 4 PHE A 166 THR A 167 1 O PHE A 166 N VAL A 230 SHEET 1 AF 4 GLN A 199 GLN A 207 0 SHEET 2 AF 4 SER A 189 LYS A 196 -1 O MET A 190 N ALA A 206 SHEET 3 AF 4 GLU A 229 GLY A 236 -1 O PHE A 231 N CYS A 195 SHEET 4 AF 4 GLU A 144 VAL A 145 -1 O GLU A 144 N LEU A 234 LINK OD2 ASP A 193 MG MG A1264 1555 1555 2.17 LINK OD2 ASP A 208 NI NI A1262 3565 1555 2.19 LINK OD2 ASP A 208 NI NI A1262 2665 1555 2.06 LINK OD2 ASP A 208 NI NI A1262 1555 1555 2.20 LINK OD1 ASP A 210 CD CD A1259 1555 1555 2.79 LINK OD2 ASP A 210 CD CD A1259 1555 1555 2.49 LINK OD1 ASP A 210 CD CD A1259 3565 1555 2.79 LINK OD2 ASP A 210 CD CD A1259 3565 1555 2.49 LINK OD2 ASP A 210 CD CD A1259 2665 1555 2.50 LINK OD1 ASP A 210 CD CD A1259 2665 1555 2.79 LINK OD1 ASP A 214 CD CD A1260 1555 1555 2.43 LINK OD1 ASP A 214 CD CD A1260 3565 1555 2.43 LINK OD1 ASP A 214 CD CD A1260 2665 1555 2.43 LINK OD2 ASP A 214 NI NI A1261 3565 1555 2.25 LINK OD2 ASP A 214 NI NI A1261 1555 1555 2.25 LINK OD2 ASP A 214 NI NI A1261 2665 1555 2.25 LINK OD2 ASP A 235 MG MG A1264 1555 1555 2.38 LINK CD CD A1259 CL CL A1263 1555 1555 2.76 LINK CD CD A1259 CL CL A1263 1555 2665 2.76 LINK CD CD A1259 CL CL A1263 1555 3565 2.76 LINK CD CD A1260 O HOH A2068 1555 1555 2.50 LINK CD CD A1260 O HOH A2068 1555 2665 2.50 LINK CD CD A1260 O HOH A2068 1555 3565 2.50 LINK NI NI A1261 O HOH A2063 1555 3565 2.23 LINK NI NI A1261 O HOH A2063 1555 2665 2.23 LINK NI NI A1261 O HOH A2063 1555 1555 2.23 LINK NI NI A1262 O HOH A2062 1555 3565 2.25 LINK NI NI A1262 O HOH A2062 1555 1555 2.11 LINK NI NI A1262 O HOH A2062 1555 2665 2.11 LINK MG MG A1264 O HOH A2046 1555 1555 2.10 LINK MG MG A1264 O HOH A2047 1555 1555 2.94 LINK MG MG A1264 O HOH A2048 1555 1555 2.51 SITE 1 AC1 2 ASP A 210 CL A1263 SITE 1 AC2 2 ASP A 214 HOH A2068 SITE 1 AC3 2 ASP A 214 HOH A2063 SITE 1 AC4 2 ASP A 208 HOH A2062 SITE 1 AC5 1 CD A1259 SITE 1 AC6 5 ASP A 193 ASP A 235 HOH A2046 HOH A2047 SITE 2 AC6 5 HOH A2048 CRYST1 68.080 68.080 65.910 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014689 0.008480 0.000000 0.00000 SCALE2 0.000000 0.016961 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015172 0.00000