HEADER TRANSFERASE/TRANSFERASE INHIBITOR 11-JAN-12 4D8Z TITLE CRYSTAL STRUCTURE OF B. ANTHRACIS DHPS WITH COMPOUND 24 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROPTEROATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.5.1.15; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS ANTHRACIS; SOURCE 3 ORGANISM_COMMON: ANTHRAX; SOURCE 4 ORGANISM_TAXID: 191218; SOURCE 5 STRAIN: A2012; SOURCE 6 GENE: FOLP; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS TIM BARREL, DHPS, DHPS INHIBITORS, TRANSFERASE, TRANSFERASE- KEYWDS 2 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.HAMMOUDEH,R.E.LEE,S.W.WHITE REVDAT 4 13-SEP-23 4D8Z 1 REMARK SEQADV REVDAT 3 15-NOV-17 4D8Z 1 REMARK REVDAT 2 09-MAY-12 4D8Z 1 JRNL REVDAT 1 28-MAR-12 4D8Z 0 JRNL AUTH Y.ZHAO,D.HAMMOUDEH,M.K.YUN,J.QI,S.W.WHITE,R.E.LEE JRNL TITL STRUCTURE-BASED DESIGN OF NOVEL PYRIMIDO[4,5-C]PYRIDAZINE JRNL TITL 2 DERIVATIVES AS DIHYDROPTEROATE SYNTHASE INHIBITORS WITH JRNL TITL 3 INCREASED AFFINITY. JRNL REF CHEMMEDCHEM V. 7 861 2012 JRNL REFN ISSN 1860-7179 JRNL PMID 22416048 JRNL DOI 10.1002/CMDC.201200049 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.1_357 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.160 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 3 NUMBER OF REFLECTIONS : 35713 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1803 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.0089 - 4.7290 0.96 3948 202 0.1783 0.2010 REMARK 3 2 4.7290 - 3.7561 0.95 3637 209 0.1601 0.1940 REMARK 3 3 3.7561 - 3.2820 0.97 3634 194 0.2125 0.2460 REMARK 3 4 3.2820 - 2.9823 0.99 3725 183 0.2597 0.3257 REMARK 3 5 2.9823 - 2.7687 0.98 3645 206 0.2767 0.3501 REMARK 3 6 2.7687 - 2.6056 0.98 3646 191 0.2726 0.3782 REMARK 3 7 2.6056 - 2.4752 0.96 3546 200 0.2727 0.3347 REMARK 3 8 2.4752 - 2.3675 0.87 3201 169 0.2760 0.3838 REMARK 3 9 2.3675 - 2.2764 0.74 2703 141 0.2916 0.3814 REMARK 3 10 2.2764 - 2.1980 0.61 2225 108 0.3018 0.3725 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 45.60 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 13.10600 REMARK 3 B22 (A**2) : 13.10600 REMARK 3 B33 (A**2) : -26.21210 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4166 REMARK 3 ANGLE : 0.999 5634 REMARK 3 CHIRALITY : 0.066 630 REMARK 3 PLANARITY : 0.004 723 REMARK 3 DIHEDRAL : 14.056 1559 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' REMARK 3 ORIGIN FOR THE GROUP (A): -18.9017 24.0671 3.5398 REMARK 3 T TENSOR REMARK 3 T11: 0.5443 T22: 0.3856 REMARK 3 T33: 0.3679 T12: -0.1468 REMARK 3 T13: 0.0121 T23: 0.0512 REMARK 3 L TENSOR REMARK 3 L11: 0.5665 L22: 0.1151 REMARK 3 L33: 1.1528 L12: -0.0501 REMARK 3 L13: 0.4891 L23: -0.2449 REMARK 3 S TENSOR REMARK 3 S11: 0.0473 S12: -0.1597 S13: -0.0397 REMARK 3 S21: 0.1662 S22: -0.0670 S23: 0.0015 REMARK 3 S31: 0.3215 S32: 0.0068 S33: 0.0263 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' REMARK 3 ORIGIN FOR THE GROUP (A): -30.6575 4.8322 51.2991 REMARK 3 T TENSOR REMARK 3 T11: 0.4810 T22: 0.4250 REMARK 3 T33: 0.3662 T12: -0.0602 REMARK 3 T13: 0.0204 T23: 0.0508 REMARK 3 L TENSOR REMARK 3 L11: 0.9088 L22: 1.0024 REMARK 3 L33: 1.0822 L12: 0.4341 REMARK 3 L13: 0.2484 L23: -0.1923 REMARK 3 S TENSOR REMARK 3 S11: -0.1144 S12: 0.1836 S13: 0.0548 REMARK 3 S21: -0.2127 S22: -0.0243 S23: -0.0102 REMARK 3 S31: -0.0586 S32: 0.3278 S33: 0.1276 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4D8Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000070032. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL - LIQUED NITROGEN REMARK 200 COOLED REMARK 200 OPTICS : ROSENBAUM-ROCK DOUBLE-CRYSTAL REMARK 200 MONOCHROMATOR: LIQUID NITROGEN REMARK 200 COOLED; SAGITALLY FOCUSING 2ND REMARK 200 CRYSTAL, ROSENBAUM-ROCK VERTICAL REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36164 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.198 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : 0.12700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.690 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: APO STRUCTURE PDB ID 1TWS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LITHIUM SULFATE, BIS-TRIS PROPANE, PH REMARK 280 9.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 175.42467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.71233 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 175.42467 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 87.71233 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 175.42467 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 87.71233 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 175.42467 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 87.71233 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -99.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -49.36600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 85.50442 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -117.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -98.73200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -225.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -98.73200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -98.73200 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 87.71233 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 87.71233 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 VAL A 28 REMARK 465 GLY A 64 REMARK 465 GLU A 65 REMARK 465 SER A 66 REMARK 465 THR A 67 REMARK 465 ARG A 68 REMARK 465 PRO A 69 REMARK 465 GLY A 70 REMARK 465 PHE A 71 REMARK 465 ALA A 72 REMARK 465 GLY A 275 REMARK 465 VAL A 276 REMARK 465 LYS A 277 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 VAL B 28 REMARK 465 THR B 29 REMARK 465 PRO B 30 REMARK 465 ASP B 31 REMARK 465 SER B 32 REMARK 465 PHE B 33 REMARK 465 SER B 66 REMARK 465 THR B 67 REMARK 465 ARG B 68 REMARK 465 PRO B 69 REMARK 465 GLY B 70 REMARK 465 PHE B 71 REMARK 465 ALA B 72 REMARK 465 LYS B 73 REMARK 465 VAL B 74 REMARK 465 GLY B 275 REMARK 465 VAL B 276 REMARK 465 LYS B 277 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 VAL A 74 CG1 CG2 REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 LYS A 92 CG CD CE NZ REMARK 470 LYS B 2 CG CD CE NZ REMARK 470 SER B 34 OG REMARK 470 ASP B 35 CG OD1 OD2 REMARK 470 GLU B 78 CG CD OE1 OE2 REMARK 470 ARG B 82 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 130 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 109 CE NZ REMARK 480 MET A 151 CE REMARK 480 GLU A 194 CG REMARK 480 LYS A 266 CE NZ REMARK 480 LYS B 169 CD CE NZ REMARK 480 LYS B 266 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 155 95.41 -162.67 REMARK 500 ARG A 219 17.66 55.64 REMARK 500 CYS B 9 60.09 -118.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0J2 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0J2 B 306 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1TWS RELATED DB: PDB REMARK 900 STRUCTURE OF WT APO BADHPS REMARK 900 RELATED ID: 4D8A RELATED DB: PDB REMARK 900 RELATED ID: 4D9P RELATED DB: PDB REMARK 900 RELATED ID: 4DAF RELATED DB: PDB REMARK 900 RELATED ID: 4DAI RELATED DB: PDB REMARK 900 RELATED ID: 4DB7 RELATED DB: PDB DBREF 4D8Z A 1 277 UNP C3P9L8 C3P9L8_BACAA 1 277 DBREF 4D8Z B 1 277 UNP C3P9L8 C3P9L8_BACAA 1 277 SEQADV 4D8Z MET A -19 UNP C3P9L8 EXPRESSION TAG SEQADV 4D8Z GLY A -18 UNP C3P9L8 EXPRESSION TAG SEQADV 4D8Z SER A -17 UNP C3P9L8 EXPRESSION TAG SEQADV 4D8Z SER A -16 UNP C3P9L8 EXPRESSION TAG SEQADV 4D8Z HIS A -15 UNP C3P9L8 EXPRESSION TAG SEQADV 4D8Z HIS A -14 UNP C3P9L8 EXPRESSION TAG SEQADV 4D8Z HIS A -13 UNP C3P9L8 EXPRESSION TAG SEQADV 4D8Z HIS A -12 UNP C3P9L8 EXPRESSION TAG SEQADV 4D8Z HIS A -11 UNP C3P9L8 EXPRESSION TAG SEQADV 4D8Z HIS A -10 UNP C3P9L8 EXPRESSION TAG SEQADV 4D8Z SER A -9 UNP C3P9L8 EXPRESSION TAG SEQADV 4D8Z SER A -8 UNP C3P9L8 EXPRESSION TAG SEQADV 4D8Z GLY A -7 UNP C3P9L8 EXPRESSION TAG SEQADV 4D8Z LEU A -6 UNP C3P9L8 EXPRESSION TAG SEQADV 4D8Z VAL A -5 UNP C3P9L8 EXPRESSION TAG SEQADV 4D8Z PRO A -4 UNP C3P9L8 EXPRESSION TAG SEQADV 4D8Z ARG A -3 UNP C3P9L8 EXPRESSION TAG SEQADV 4D8Z GLY A -2 UNP C3P9L8 EXPRESSION TAG SEQADV 4D8Z SER A -1 UNP C3P9L8 EXPRESSION TAG SEQADV 4D8Z HIS A 0 UNP C3P9L8 EXPRESSION TAG SEQADV 4D8Z MET B -19 UNP C3P9L8 EXPRESSION TAG SEQADV 4D8Z GLY B -18 UNP C3P9L8 EXPRESSION TAG SEQADV 4D8Z SER B -17 UNP C3P9L8 EXPRESSION TAG SEQADV 4D8Z SER B -16 UNP C3P9L8 EXPRESSION TAG SEQADV 4D8Z HIS B -15 UNP C3P9L8 EXPRESSION TAG SEQADV 4D8Z HIS B -14 UNP C3P9L8 EXPRESSION TAG SEQADV 4D8Z HIS B -13 UNP C3P9L8 EXPRESSION TAG SEQADV 4D8Z HIS B -12 UNP C3P9L8 EXPRESSION TAG SEQADV 4D8Z HIS B -11 UNP C3P9L8 EXPRESSION TAG SEQADV 4D8Z HIS B -10 UNP C3P9L8 EXPRESSION TAG SEQADV 4D8Z SER B -9 UNP C3P9L8 EXPRESSION TAG SEQADV 4D8Z SER B -8 UNP C3P9L8 EXPRESSION TAG SEQADV 4D8Z GLY B -7 UNP C3P9L8 EXPRESSION TAG SEQADV 4D8Z LEU B -6 UNP C3P9L8 EXPRESSION TAG SEQADV 4D8Z VAL B -5 UNP C3P9L8 EXPRESSION TAG SEQADV 4D8Z PRO B -4 UNP C3P9L8 EXPRESSION TAG SEQADV 4D8Z ARG B -3 UNP C3P9L8 EXPRESSION TAG SEQADV 4D8Z GLY B -2 UNP C3P9L8 EXPRESSION TAG SEQADV 4D8Z SER B -1 UNP C3P9L8 EXPRESSION TAG SEQADV 4D8Z HIS B 0 UNP C3P9L8 EXPRESSION TAG SEQRES 1 A 297 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 297 LEU VAL PRO ARG GLY SER HIS MET LYS TRP ASP TYR ASP SEQRES 3 A 297 LEU ARG CYS GLY GLU TYR THR LEU ASN LEU ASN GLU LYS SEQRES 4 A 297 THR LEU ILE MET GLY ILE LEU ASN VAL THR PRO ASP SER SEQRES 5 A 297 PHE SER ASP GLY GLY SER TYR ASN GLU VAL ASP ALA ALA SEQRES 6 A 297 VAL ARG HIS ALA LYS GLU MET ARG ASP GLU GLY ALA HIS SEQRES 7 A 297 ILE ILE ASP ILE GLY GLY GLU SER THR ARG PRO GLY PHE SEQRES 8 A 297 ALA LYS VAL SER VAL GLU GLU GLU ILE LYS ARG VAL VAL SEQRES 9 A 297 PRO MET ILE GLN ALA VAL SER LYS GLU VAL LYS LEU PRO SEQRES 10 A 297 ILE SER ILE ASP THR TYR LYS ALA GLU VAL ALA LYS GLN SEQRES 11 A 297 ALA ILE GLU ALA GLY ALA HIS ILE ILE ASN ASP ILE TRP SEQRES 12 A 297 GLY ALA LYS ALA GLU PRO LYS ILE ALA GLU VAL ALA ALA SEQRES 13 A 297 HIS TYR ASP VAL PRO ILE ILE LEU MET HIS ASN ARG ASP SEQRES 14 A 297 ASN MET ASN TYR ARG ASN LEU MET ALA ASP MET ILE ALA SEQRES 15 A 297 ASP LEU TYR ASP SER ILE LYS ILE ALA LYS ASP ALA GLY SEQRES 16 A 297 VAL ARG ASP GLU ASN ILE ILE LEU ASP PRO GLY ILE GLY SEQRES 17 A 297 PHE ALA LYS THR PRO GLU GLN ASN LEU GLU ALA MET ARG SEQRES 18 A 297 ASN LEU GLU GLN LEU ASN VAL LEU GLY TYR PRO VAL LEU SEQRES 19 A 297 LEU GLY THR SER ARG LYS SER PHE ILE GLY HIS VAL LEU SEQRES 20 A 297 ASP LEU PRO VAL GLU GLU ARG LEU GLU GLY THR GLY ALA SEQRES 21 A 297 THR VAL CYS LEU GLY ILE GLU LYS GLY CYS GLU PHE VAL SEQRES 22 A 297 ARG VAL HIS ASP VAL LYS GLU MET SER ARG MET ALA LYS SEQRES 23 A 297 MET MET ASP ALA MET ILE GLY LYS GLY VAL LYS SEQRES 1 B 297 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 297 LEU VAL PRO ARG GLY SER HIS MET LYS TRP ASP TYR ASP SEQRES 3 B 297 LEU ARG CYS GLY GLU TYR THR LEU ASN LEU ASN GLU LYS SEQRES 4 B 297 THR LEU ILE MET GLY ILE LEU ASN VAL THR PRO ASP SER SEQRES 5 B 297 PHE SER ASP GLY GLY SER TYR ASN GLU VAL ASP ALA ALA SEQRES 6 B 297 VAL ARG HIS ALA LYS GLU MET ARG ASP GLU GLY ALA HIS SEQRES 7 B 297 ILE ILE ASP ILE GLY GLY GLU SER THR ARG PRO GLY PHE SEQRES 8 B 297 ALA LYS VAL SER VAL GLU GLU GLU ILE LYS ARG VAL VAL SEQRES 9 B 297 PRO MET ILE GLN ALA VAL SER LYS GLU VAL LYS LEU PRO SEQRES 10 B 297 ILE SER ILE ASP THR TYR LYS ALA GLU VAL ALA LYS GLN SEQRES 11 B 297 ALA ILE GLU ALA GLY ALA HIS ILE ILE ASN ASP ILE TRP SEQRES 12 B 297 GLY ALA LYS ALA GLU PRO LYS ILE ALA GLU VAL ALA ALA SEQRES 13 B 297 HIS TYR ASP VAL PRO ILE ILE LEU MET HIS ASN ARG ASP SEQRES 14 B 297 ASN MET ASN TYR ARG ASN LEU MET ALA ASP MET ILE ALA SEQRES 15 B 297 ASP LEU TYR ASP SER ILE LYS ILE ALA LYS ASP ALA GLY SEQRES 16 B 297 VAL ARG ASP GLU ASN ILE ILE LEU ASP PRO GLY ILE GLY SEQRES 17 B 297 PHE ALA LYS THR PRO GLU GLN ASN LEU GLU ALA MET ARG SEQRES 18 B 297 ASN LEU GLU GLN LEU ASN VAL LEU GLY TYR PRO VAL LEU SEQRES 19 B 297 LEU GLY THR SER ARG LYS SER PHE ILE GLY HIS VAL LEU SEQRES 20 B 297 ASP LEU PRO VAL GLU GLU ARG LEU GLU GLY THR GLY ALA SEQRES 21 B 297 THR VAL CYS LEU GLY ILE GLU LYS GLY CYS GLU PHE VAL SEQRES 22 B 297 ARG VAL HIS ASP VAL LYS GLU MET SER ARG MET ALA LYS SEQRES 23 B 297 MET MET ASP ALA MET ILE GLY LYS GLY VAL LYS HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET 0J2 A 305 19 HET SO4 B 301 5 HET SO4 B 302 5 HET SO4 B 303 5 HET SO4 B 304 5 HET SO4 B 305 5 HET 0J2 B 306 19 HETNAM SO4 SULFATE ION HETNAM 0J2 (3R)-3-(7-AMINO-4,5-DIOXO-1,4,5,6-TETRAHYDROPYRIMIDO[4, HETNAM 2 0J2 5-C]PYRIDAZIN-3-YL)BUTANOIC ACID FORMUL 3 SO4 9(O4 S 2-) FORMUL 7 0J2 2(C10 H11 N5 O4) FORMUL 14 HOH *60(H2 O) HELIX 1 1 SER A 38 GLY A 56 1 19 HELIX 2 2 SER A 75 VAL A 94 1 20 HELIX 3 3 LYS A 104 GLY A 115 1 12 HELIX 4 4 PRO A 129 ASP A 139 1 11 HELIX 5 5 ASN A 155 ALA A 174 1 20 HELIX 6 6 ARG A 177 GLU A 179 5 3 HELIX 7 7 THR A 192 ASN A 202 1 11 HELIX 8 8 LEU A 203 GLY A 210 5 8 HELIX 9 9 LYS A 220 ASP A 228 1 9 HELIX 10 10 PRO A 230 GLU A 233 5 4 HELIX 11 11 ARG A 234 LYS A 248 1 15 HELIX 12 12 ASP A 257 GLY A 273 1 17 HELIX 13 13 SER B 38 GLY B 56 1 19 HELIX 14 14 VAL B 76 VAL B 94 1 19 HELIX 15 15 LYS B 104 GLY B 115 1 12 HELIX 16 16 PRO B 129 ASP B 139 1 11 HELIX 17 17 ASN B 155 GLY B 175 1 21 HELIX 18 18 ARG B 177 GLU B 179 5 3 HELIX 19 19 THR B 192 LEU B 203 1 12 HELIX 20 20 GLU B 204 GLY B 210 5 7 HELIX 21 21 LYS B 220 ASP B 228 1 9 HELIX 22 22 PRO B 230 GLU B 233 5 4 HELIX 23 23 ARG B 234 LYS B 248 1 15 HELIX 24 24 ASP B 257 GLY B 273 1 17 SHEET 1 A 2 LEU A 7 CYS A 9 0 SHEET 2 A 2 TYR A 12 LEU A 14 -1 O LEU A 14 N LEU A 7 SHEET 1 B 8 ILE A 181 ASP A 184 0 SHEET 2 B 8 ILE A 142 MET A 145 1 N LEU A 144 O ILE A 182 SHEET 3 B 8 ILE A 118 ASP A 121 1 N ILE A 119 O ILE A 143 SHEET 4 B 8 ILE A 98 ASP A 101 1 N ILE A 100 O ASN A 120 SHEET 5 B 8 ILE A 59 ILE A 62 1 N ILE A 62 O SER A 99 SHEET 6 B 8 LEU A 21 ILE A 25 1 N GLY A 24 O ASP A 61 SHEET 7 B 8 PHE A 252 VAL A 255 1 O VAL A 253 N MET A 23 SHEET 8 B 8 LEU A 214 LEU A 215 1 N LEU A 215 O ARG A 254 SHEET 1 C 2 LEU B 7 CYS B 9 0 SHEET 2 C 2 TYR B 12 LEU B 14 -1 O LEU B 14 N LEU B 7 SHEET 1 D 8 ILE B 181 ASP B 184 0 SHEET 2 D 8 ILE B 142 MET B 145 1 N LEU B 144 O ILE B 182 SHEET 3 D 8 ILE B 118 ASP B 121 1 N ILE B 119 O ILE B 143 SHEET 4 D 8 ILE B 98 ASP B 101 1 N ILE B 100 O ILE B 118 SHEET 5 D 8 ILE B 59 ILE B 62 1 N ILE B 62 O SER B 99 SHEET 6 D 8 LEU B 21 ILE B 25 1 N GLY B 24 O ILE B 59 SHEET 7 D 8 PHE B 252 VAL B 255 1 O VAL B 253 N MET B 23 SHEET 8 D 8 LEU B 214 LEU B 215 1 N LEU B 215 O ARG B 254 SITE 1 AC1 1 ARG A 219 SITE 1 AC2 2 LEU A 229 ARG A 263 SITE 1 AC3 2 LYS A 50 ARG A 53 SITE 1 AC4 2 SER A 221 ARG A 234 SITE 1 AC5 10 ASP A 101 ASN A 120 ILE A 122 ILE A 143 SITE 2 AC5 10 MET A 145 ASP A 184 PHE A 189 GLY A 216 SITE 3 AC5 10 LYS A 220 ARG A 254 SITE 1 AC6 3 SER B 221 ARG B 234 HOH B 420 SITE 1 AC7 3 GLU B 198 ARG B 201 ASN B 202 SITE 1 AC8 3 LEU B 229 ARG B 263 HOH B 426 SITE 1 AC9 2 LYS B 50 ARG B 53 SITE 1 BC1 1 ARG B 219 SITE 1 BC2 8 ASP B 101 ASN B 120 ILE B 122 ASP B 184 SITE 2 BC2 8 PHE B 189 GLY B 216 LYS B 220 ARG B 254 CRYST1 98.732 98.732 263.137 90.00 90.00 120.00 P 62 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010128 0.005848 0.000000 0.00000 SCALE2 0.000000 0.011695 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003800 0.00000