HEADER HYDROLASE 11-JAN-12 4D91 TITLE THERMOLYSIN IN COMPLEX WITH DMSO AND ACETATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMOLYSIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MATURE FORM (UNP RESIDUES 233-548); COMPND 5 SYNONYM: THERMOSTABLE NEUTRAL PROTEINASE; COMPND 6 EC: 3.4.24.27 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS THERMOPROTEOLYTICUS; SOURCE 3 ORGANISM_TAXID: 1427 KEYWDS PROTEASE, METALLOPROTEASE, HYDROLYSIS OF PEPTIDE BONDS, KEYWDS 2 PHOSPHORAMIDON, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.BIELA,A.HEINE,G.KLEBE REVDAT 3 28-FEB-24 4D91 1 REMARK LINK REVDAT 2 15-NOV-17 4D91 1 REMARK REVDAT 1 16-JAN-13 4D91 0 JRNL AUTH A.BIELA,N.NASIEF,A.HEINE,D.HANGAUER,G.KLEBE JRNL TITL THERMOLYSIN INHIBITION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 48848 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1292 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.3455 - 4.8813 1.00 2785 166 0.1754 0.1692 REMARK 3 2 4.8813 - 3.8761 1.00 2795 139 0.1277 0.1674 REMARK 3 3 3.8761 - 3.3866 1.00 2793 146 0.1425 0.1386 REMARK 3 4 3.3866 - 3.0772 1.00 2791 141 0.1556 0.1653 REMARK 3 5 3.0772 - 2.8568 0.99 2782 149 0.1515 0.1840 REMARK 3 6 2.8568 - 2.6884 0.99 2776 135 0.1471 0.1760 REMARK 3 7 2.6884 - 2.5538 0.99 2779 143 0.1441 0.2165 REMARK 3 8 2.5538 - 2.4427 0.98 2743 139 0.1380 0.2081 REMARK 3 9 2.4427 - 2.3487 0.98 2781 123 0.1316 0.1675 REMARK 3 10 2.3487 - 2.2676 0.98 2716 160 0.1264 0.1944 REMARK 3 11 2.2676 - 2.1967 0.98 2720 164 0.1375 0.2046 REMARK 3 12 2.1967 - 2.1340 0.97 2694 134 0.1389 0.2184 REMARK 3 13 2.1340 - 2.0778 0.96 2707 116 0.1410 0.1784 REMARK 3 14 2.0778 - 2.0271 0.96 2662 148 0.1561 0.2406 REMARK 3 15 2.0271 - 1.9810 0.95 2693 125 0.1773 0.2408 REMARK 3 16 1.9810 - 1.9389 0.94 2653 128 0.2139 0.2766 REMARK 3 17 1.9389 - 1.9000 0.93 2585 137 0.2543 0.2659 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 48.18 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.20310 REMARK 3 B22 (A**2) : -1.20310 REMARK 3 B33 (A**2) : 2.40630 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 2537 REMARK 3 ANGLE : 0.979 3511 REMARK 3 CHIRALITY : 0.072 366 REMARK 3 PLANARITY : 0.004 449 REMARK 3 DIHEDRAL : 12.526 859 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 1:19 REMARK 3 ORIGIN FOR THE GROUP (A): -26.2884 28.4108 -11.9931 REMARK 3 T TENSOR REMARK 3 T11: 0.1468 T22: 0.1870 REMARK 3 T33: 0.1172 T12: 0.0107 REMARK 3 T13: 0.0039 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 0.6742 L22: 0.8731 REMARK 3 L33: 0.3730 L12: 0.2172 REMARK 3 L13: 0.4998 L23: 0.1123 REMARK 3 S TENSOR REMARK 3 S11: 0.0981 S12: 0.0620 S13: -0.0363 REMARK 3 S21: -0.1957 S22: -0.1357 S23: 0.0907 REMARK 3 S31: 0.0529 S32: 0.1213 S33: 0.0094 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESID 20:142 REMARK 3 ORIGIN FOR THE GROUP (A): -23.3989 33.0107 -2.0320 REMARK 3 T TENSOR REMARK 3 T11: 0.0885 T22: 0.1242 REMARK 3 T33: 0.0805 T12: -0.0021 REMARK 3 T13: 0.0018 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.6139 L22: 0.5370 REMARK 3 L33: 0.1568 L12: -0.0719 REMARK 3 L13: 0.2116 L23: 0.1876 REMARK 3 S TENSOR REMARK 3 S11: 0.0395 S12: 0.0364 S13: -0.0101 REMARK 3 S21: -0.1016 S22: -0.0808 S23: -0.0124 REMARK 3 S31: -0.0334 S32: -0.0231 S33: 0.0028 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESID 143:169 REMARK 3 ORIGIN FOR THE GROUP (A): -10.0366 32.4863 13.3262 REMARK 3 T TENSOR REMARK 3 T11: 0.1009 T22: 0.1709 REMARK 3 T33: 0.1326 T12: -0.0179 REMARK 3 T13: 0.0232 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.0343 L22: 0.0343 REMARK 3 L33: 0.1636 L12: -0.0053 REMARK 3 L13: -0.0296 L23: 0.0458 REMARK 3 S TENSOR REMARK 3 S11: 0.0367 S12: -0.0807 S13: 0.0970 REMARK 3 S21: 0.0228 S22: -0.0549 S23: 0.0375 REMARK 3 S31: -0.0802 S32: -0.1143 S33: -0.0091 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND RESID 170:209 REMARK 3 ORIGIN FOR THE GROUP (A): -3.8336 32.3324 -3.9025 REMARK 3 T TENSOR REMARK 3 T11: 0.1000 T22: 0.1817 REMARK 3 T33: 0.1617 T12: 0.0149 REMARK 3 T13: 0.0455 T23: 0.0582 REMARK 3 L TENSOR REMARK 3 L11: 0.0433 L22: 0.3401 REMARK 3 L33: 0.3080 L12: 0.0972 REMARK 3 L13: 0.0603 L23: -0.0327 REMARK 3 S TENSOR REMARK 3 S11: 0.1101 S12: 0.1621 S13: 0.1548 REMARK 3 S21: -0.0847 S22: -0.1211 S23: -0.1837 REMARK 3 S31: -0.0154 S32: 0.1655 S33: 0.0782 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND RESID 210:219 REMARK 3 ORIGIN FOR THE GROUP (A): 7.3896 38.0626 7.3826 REMARK 3 T TENSOR REMARK 3 T11: 0.1140 T22: 0.2484 REMARK 3 T33: 0.2739 T12: -0.0270 REMARK 3 T13: 0.0260 T23: 0.0246 REMARK 3 L TENSOR REMARK 3 L11: 0.0123 L22: 0.5152 REMARK 3 L33: 0.4071 L12: -0.0790 REMARK 3 L13: -0.0216 L23: 0.1547 REMARK 3 S TENSOR REMARK 3 S11: 0.0622 S12: -0.0199 S13: 0.1529 REMARK 3 S21: 0.0519 S22: 0.0172 S23: -0.1947 REMARK 3 S31: -0.0260 S32: 0.2276 S33: -0.0283 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND RESID 220:272 REMARK 3 ORIGIN FOR THE GROUP (A): 1.9222 28.6439 8.5464 REMARK 3 T TENSOR REMARK 3 T11: 0.0949 T22: 0.1418 REMARK 3 T33: 0.1701 T12: 0.0021 REMARK 3 T13: 0.0229 T23: 0.0254 REMARK 3 L TENSOR REMARK 3 L11: 0.3269 L22: 0.3796 REMARK 3 L33: 0.4040 L12: 0.1136 REMARK 3 L13: 0.1253 L23: 0.0188 REMARK 3 S TENSOR REMARK 3 S11: 0.0816 S12: -0.0518 S13: 0.0918 REMARK 3 S21: -0.0310 S22: -0.0452 S23: -0.1170 REMARK 3 S31: -0.0294 S32: 0.1262 S33: -0.0191 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND RESID 273:277 REMARK 3 ORIGIN FOR THE GROUP (A): -7.7067 23.3140 20.4060 REMARK 3 T TENSOR REMARK 3 T11: 0.1231 T22: 0.1665 REMARK 3 T33: 0.1161 T12: -0.0233 REMARK 3 T13: -0.0057 T23: 0.0422 REMARK 3 L TENSOR REMARK 3 L11: 0.2789 L22: 0.2542 REMARK 3 L33: 0.2547 L12: 0.1164 REMARK 3 L13: -0.0215 L23: -0.2371 REMARK 3 S TENSOR REMARK 3 S11: 0.0761 S12: -0.0448 S13: -0.0602 REMARK 3 S21: 0.0829 S22: 0.0786 S23: 0.0631 REMARK 3 S31: 0.0647 S32: -0.0414 S33: -0.0369 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN A AND RESID 278:316 REMARK 3 ORIGIN FOR THE GROUP (A): 4.1972 20.4755 15.3218 REMARK 3 T TENSOR REMARK 3 T11: 0.1239 T22: 0.2187 REMARK 3 T33: 0.2144 T12: 0.0074 REMARK 3 T13: -0.0124 T23: 0.0586 REMARK 3 L TENSOR REMARK 3 L11: 0.2013 L22: 1.0480 REMARK 3 L33: 0.3941 L12: 0.1139 REMARK 3 L13: 0.1566 L23: 0.1714 REMARK 3 S TENSOR REMARK 3 S11: 0.0601 S12: -0.2697 S13: -0.2128 REMARK 3 S21: 0.1332 S22: -0.0164 S23: -0.2865 REMARK 3 S31: 0.0801 S32: 0.1113 S33: 0.0005 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4D91 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000070034. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.9 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : COLLIMATING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49334 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 30.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05600 REMARK 200 FOR THE DATA SET : 82.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 27.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.33300 REMARK 200 FOR SHELL : 11.30 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.9 M CESIUM CHLORIDE, 50% DMSO, 50 MM REMARK 280 TRIS, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.30767 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 86.61533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 64.96150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 108.26917 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 21.65383 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.30767 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 86.61533 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 108.26917 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 64.96150 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 21.65383 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 767 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 777 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 830 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 128 CG CD OE1 NE2 REMARK 470 LYS A 182 CG CD CE NZ REMARK 470 SER A 198 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 25 89.33 -158.51 REMARK 500 THR A 26 -60.43 71.24 REMARK 500 SER A 92 -172.77 58.38 REMARK 500 SER A 107 -161.55 59.61 REMARK 500 THR A 152 -99.87 -122.67 REMARK 500 ASN A 159 -139.94 52.05 REMARK 500 THR A 194 77.38 40.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 408 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 57 OD2 REMARK 620 2 ASP A 57 OD1 53.1 REMARK 620 3 ASP A 59 OD1 70.2 122.9 REMARK 620 4 GLN A 61 O 88.3 95.0 89.0 REMARK 620 5 HOH A 548 O 131.3 79.4 157.4 85.1 REMARK 620 6 HOH A 566 O 147.1 157.6 77.2 95.2 81.6 REMARK 620 7 HOH A 618 O 88.9 85.0 88.1 176.5 98.4 86.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 406 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 138 OD2 REMARK 620 2 GLU A 177 OE2 74.7 REMARK 620 3 GLU A 177 OE1 124.3 50.1 REMARK 620 4 ASP A 185 OD1 160.9 124.2 74.2 REMARK 620 5 GLU A 187 O 85.3 143.6 143.2 79.6 REMARK 620 6 GLU A 190 OE1 82.1 127.5 123.4 83.4 77.7 REMARK 620 7 GLU A 190 OE2 96.7 84.3 73.9 84.0 128.7 52.2 REMARK 620 8 HOH A 542 O 98.9 80.7 80.8 87.7 72.7 150.2 154.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 142 NE2 REMARK 620 2 GLU A 143 OE2 80.9 REMARK 620 3 HIS A 146 NE2 85.9 85.9 REMARK 620 4 GLU A 166 OE2 103.8 172.7 88.8 REMARK 620 5 ACT A 403 O 137.2 83.0 132.2 96.9 REMARK 620 6 HOH A 565 O 74.8 102.2 157.3 84.6 70.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 405 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 177 OE1 REMARK 620 2 ASN A 183 O 93.7 REMARK 620 3 ASP A 185 OD2 87.6 89.7 REMARK 620 4 GLU A 190 OE2 82.8 169.3 80.1 REMARK 620 5 HOH A 532 O 173.3 91.9 96.1 92.4 REMARK 620 6 HOH A 616 O 86.4 93.2 173.5 96.7 89.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 407 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 193 O REMARK 620 2 THR A 194 O 75.8 REMARK 620 3 THR A 194 OG1 77.1 69.6 REMARK 620 4 ILE A 197 O 157.5 82.6 101.2 REMARK 620 5 ASP A 200 OD1 123.9 133.1 74.4 75.9 REMARK 620 6 HOH A 527 O 83.5 150.4 126.2 113.9 76.2 REMARK 620 7 HOH A 575 O 87.4 84.5 152.2 84.4 132.9 73.5 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 408 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ELF RELATED DB: PDB REMARK 900 RELATED ID: 4TMN RELATED DB: PDB REMARK 900 RELATED ID: 5TMN RELATED DB: PDB REMARK 900 RELATED ID: 3T73 RELATED DB: PDB REMARK 900 RELATED ID: 3T74 RELATED DB: PDB REMARK 900 RELATED ID: 3T87 RELATED DB: PDB REMARK 900 RELATED ID: 3T8C RELATED DB: PDB REMARK 900 RELATED ID: 3T8D RELATED DB: PDB REMARK 900 RELATED ID: 3T8F RELATED DB: PDB REMARK 900 RELATED ID: 3T8G RELATED DB: PDB REMARK 900 RELATED ID: 3T8H RELATED DB: PDB REMARK 900 RELATED ID: 4D9W RELATED DB: PDB DBREF 4D91 A 1 316 UNP P00800 THER_BACTH 233 548 SEQRES 1 A 316 ILE THR GLY THR SER THR VAL GLY VAL GLY ARG GLY VAL SEQRES 2 A 316 LEU GLY ASP GLN LYS ASN ILE ASN THR THR TYR SER THR SEQRES 3 A 316 TYR TYR TYR LEU GLN ASP ASN THR ARG GLY ASN GLY ILE SEQRES 4 A 316 PHE THR TYR ASP ALA LYS TYR ARG THR THR LEU PRO GLY SEQRES 5 A 316 SER LEU TRP ALA ASP ALA ASP ASN GLN PHE PHE ALA SER SEQRES 6 A 316 TYR ASP ALA PRO ALA VAL ASP ALA HIS TYR TYR ALA GLY SEQRES 7 A 316 VAL THR TYR ASP TYR TYR LYS ASN VAL HIS ASN ARG LEU SEQRES 8 A 316 SER TYR ASP GLY ASN ASN ALA ALA ILE ARG SER SER VAL SEQRES 9 A 316 HIS TYR SER GLN GLY TYR ASN ASN ALA PHE TRP ASN GLY SEQRES 10 A 316 SER GLN MET VAL TYR GLY ASP GLY ASP GLY GLN THR PHE SEQRES 11 A 316 ILE PRO LEU SER GLY GLY ILE ASP VAL VAL ALA HIS GLU SEQRES 12 A 316 LEU THR HIS ALA VAL THR ASP TYR THR ALA GLY LEU ILE SEQRES 13 A 316 TYR GLN ASN GLU SER GLY ALA ILE ASN GLU ALA ILE SER SEQRES 14 A 316 ASP ILE PHE GLY THR LEU VAL GLU PHE TYR ALA ASN LYS SEQRES 15 A 316 ASN PRO ASP TRP GLU ILE GLY GLU ASP VAL TYR THR PRO SEQRES 16 A 316 GLY ILE SER GLY ASP SER LEU ARG SER MET SER ASP PRO SEQRES 17 A 316 ALA LYS TYR GLY ASP PRO ASP HIS TYR SER LYS ARG TYR SEQRES 18 A 316 THR GLY THR GLN ASP ASN GLY GLY VAL HIS ILE ASN SER SEQRES 19 A 316 GLY ILE ILE ASN LYS ALA ALA TYR LEU ILE SER GLN GLY SEQRES 20 A 316 GLY THR HIS TYR GLY VAL SER VAL VAL GLY ILE GLY ARG SEQRES 21 A 316 ASP LYS LEU GLY LYS ILE PHE TYR ARG ALA LEU THR GLN SEQRES 22 A 316 TYR LEU THR PRO THR SER ASN PHE SER GLN LEU ARG ALA SEQRES 23 A 316 ALA ALA VAL GLN SER ALA THR ASP LEU TYR GLY SER THR SEQRES 24 A 316 SER GLN GLU VAL ALA SER VAL LYS GLN ALA PHE ASP ALA SEQRES 25 A 316 VAL GLY VAL LYS HET DMS A 401 4 HET DMS A 402 4 HET ACT A 403 4 HET ZN A 404 1 HET CA A 405 1 HET CA A 406 1 HET CA A 407 1 HET CA A 408 1 HETNAM DMS DIMETHYL SULFOXIDE HETNAM ACT ACETATE ION HETNAM ZN ZINC ION HETNAM CA CALCIUM ION FORMUL 2 DMS 2(C2 H6 O S) FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 ZN ZN 2+ FORMUL 6 CA 4(CA 2+) FORMUL 10 HOH *368(H2 O) HELIX 1 1 ALA A 64 TYR A 66 5 3 HELIX 2 2 ASP A 67 ASN A 89 1 23 HELIX 3 3 PRO A 132 GLY A 135 5 4 HELIX 4 4 GLY A 136 THR A 152 1 17 HELIX 5 5 GLN A 158 ASN A 181 1 24 HELIX 6 6 ASP A 207 GLY A 212 5 6 HELIX 7 7 HIS A 216 ARG A 220 5 5 HELIX 8 8 THR A 224 VAL A 230 1 7 HELIX 9 9 ASN A 233 GLY A 247 1 15 HELIX 10 10 GLY A 259 TYR A 274 1 16 HELIX 11 11 ASN A 280 GLY A 297 1 18 HELIX 12 12 SER A 300 VAL A 313 1 14 SHEET 1 A 5 ALA A 56 ASP A 57 0 SHEET 2 A 5 TYR A 28 TYR A 29 -1 N TYR A 28 O ASP A 57 SHEET 3 A 5 GLN A 17 TYR A 24 -1 N THR A 23 O TYR A 29 SHEET 4 A 5 THR A 4 ARG A 11 -1 N GLY A 8 O ILE A 20 SHEET 5 A 5 GLN A 61 PHE A 62 1 O PHE A 62 N VAL A 9 SHEET 1 B 3 GLN A 31 ASP A 32 0 SHEET 2 B 3 ILE A 39 ASP A 43 -1 O ILE A 39 N ASP A 32 SHEET 3 B 3 SER A 53 LEU A 54 -1 O SER A 53 N ASP A 43 SHEET 1 C 5 GLN A 31 ASP A 32 0 SHEET 2 C 5 ILE A 39 ASP A 43 -1 O ILE A 39 N ASP A 32 SHEET 3 C 5 ILE A 100 VAL A 104 1 O SER A 102 N TYR A 42 SHEET 4 C 5 MET A 120 TYR A 122 1 O MET A 120 N ARG A 101 SHEET 5 C 5 ALA A 113 TRP A 115 -1 N PHE A 114 O VAL A 121 SHEET 1 D 2 GLU A 187 ILE A 188 0 SHEET 2 D 2 ARG A 203 SER A 204 -1 O ARG A 203 N ILE A 188 SHEET 1 E 2 GLY A 248 HIS A 250 0 SHEET 2 E 2 VAL A 253 VAL A 255 -1 O VAL A 255 N GLY A 248 LINK OD2 ASP A 57 CA CA A 408 1555 1555 2.45 LINK OD1 ASP A 57 CA CA A 408 1555 1555 2.45 LINK OD1 ASP A 59 CA CA A 408 1555 1555 2.43 LINK O GLN A 61 CA CA A 408 1555 1555 2.26 LINK OD2 ASP A 138 CA CA A 406 1555 1555 2.38 LINK NE2 HIS A 142 ZN ZN A 404 1555 1555 2.25 LINK OE2 GLU A 143 ZN ZN A 404 1555 1555 2.28 LINK NE2 HIS A 146 ZN ZN A 404 1555 1555 2.23 LINK OE2 GLU A 166 ZN ZN A 404 1555 1555 2.17 LINK OE1 GLU A 177 CA CA A 405 1555 1555 2.44 LINK OE2 GLU A 177 CA CA A 406 1555 1555 2.47 LINK OE1 GLU A 177 CA CA A 406 1555 1555 2.67 LINK O ASN A 183 CA CA A 405 1555 1555 2.30 LINK OD2 ASP A 185 CA CA A 405 1555 1555 2.39 LINK OD1 ASP A 185 CA CA A 406 1555 1555 2.44 LINK O GLU A 187 CA CA A 406 1555 1555 2.37 LINK OE2 GLU A 190 CA CA A 405 1555 1555 2.27 LINK OE1 GLU A 190 CA CA A 406 1555 1555 2.47 LINK OE2 GLU A 190 CA CA A 406 1555 1555 2.51 LINK O TYR A 193 CA CA A 407 1555 1555 2.35 LINK O THR A 194 CA CA A 407 1555 1555 2.35 LINK OG1 THR A 194 CA CA A 407 1555 1555 2.38 LINK O ILE A 197 CA CA A 407 1555 1555 2.33 LINK OD1 ASP A 200 CA CA A 407 1555 1555 2.44 LINK O ACT A 403 ZN ZN A 404 1555 1555 2.47 LINK ZN ZN A 404 O HOH A 565 1555 1555 2.64 LINK CA CA A 405 O HOH A 532 1555 1555 2.38 LINK CA CA A 405 O HOH A 616 1555 1555 2.39 LINK CA CA A 406 O HOH A 542 1555 1555 2.48 LINK CA CA A 407 O HOH A 527 1555 1555 2.41 LINK CA CA A 407 O HOH A 575 1555 1555 2.41 LINK CA CA A 408 O HOH A 548 1555 1555 2.40 LINK CA CA A 408 O HOH A 566 1555 1555 2.45 LINK CA CA A 408 O HOH A 618 1555 1555 2.40 CISPEP 1 LEU A 50 PRO A 51 0 3.77 SITE 1 AC1 6 ALA A 113 GLU A 143 LEU A 202 ARG A 203 SITE 2 AC1 6 HOH A 565 HOH A 819 SITE 1 AC2 4 THR A 2 GLY A 3 GLN A 31 ASN A 33 SITE 1 AC3 8 ASN A 112 ALA A 113 GLU A 143 TYR A 157 SITE 2 AC3 8 GLU A 166 HIS A 231 ZN A 404 HOH A 565 SITE 1 AC4 6 HIS A 142 GLU A 143 HIS A 146 GLU A 166 SITE 2 AC4 6 ACT A 403 HOH A 565 SITE 1 AC5 6 GLU A 177 ASN A 183 ASP A 185 GLU A 190 SITE 2 AC5 6 HOH A 532 HOH A 616 SITE 1 AC6 6 ASP A 138 GLU A 177 ASP A 185 GLU A 187 SITE 2 AC6 6 GLU A 190 HOH A 542 SITE 1 AC7 6 TYR A 193 THR A 194 ILE A 197 ASP A 200 SITE 2 AC7 6 HOH A 527 HOH A 575 SITE 1 AC8 6 ASP A 57 ASP A 59 GLN A 61 HOH A 548 SITE 2 AC8 6 HOH A 566 HOH A 618 CRYST1 93.425 93.425 129.923 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010704 0.006180 0.000000 0.00000 SCALE2 0.000000 0.012360 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007697 0.00000