HEADER TRANSFERASE/TRANSFERASE INHIBITOR 12-JAN-12 4D9T TITLE RSK2 C-TERMINAL KINASE DOMAIN WITH INHIBITOR (E)-METHYL 3-(4-AMINO-7- TITLE 2 (3-HYDROXYPROPYL)-5-P-TOLYL-7H-PYRROLO[2,3-D]PYRIMIDIN-6-YL)-2- TITLE 3 CYANOACRYLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOMAL PROTEIN S6 KINASE ALPHA-3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL KINASE DOMAIN, UNP RESIDUES 399-740; COMPND 5 SYNONYM: S6K-ALPHA-3, 90 KDA RIBOSOMAL PROTEIN S6 KINASE 3, P90-RSK COMPND 6 3, P90RSK3, INSULIN-STIMULATED PROTEIN KINASE 1, ISPK-1, MAP KINASE- COMPND 7 ACTIVATED PROTEIN KINASE 1B, MAPK-ACTIVATED PROTEIN KINASE 1B, MAPKAP COMPND 8 KINASE 1B, MAPKAPK-1B, RIBOSOMAL S6 KINASE 2, RSK-2, PP90RSK2; COMPND 9 EC: 2.7.11.1; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ISPK1, MAPKAPK1B, RPS6KA3, RSK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET46 KEYWDS KINASE, INHIBITOR, REVERSIBLE, THIOL, PHOSPHORYLATION, MIGRATION,, KEYWDS 2 TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR I.M.SERAFIMOVA,M.A.PUFALL,S.KRISHNAN,K.DUDA,M.S.COHEN,R.L.MAGLATHLIN, AUTHOR 2 J.M.MCFARLAND,R.M.MILLER,M.FRODIN,J.TAUNTON REVDAT 2 16-MAY-12 4D9T 1 JRNL REVDAT 1 25-APR-12 4D9T 0 JRNL AUTH I.M.SERAFIMOVA,M.A.PUFALL,S.KRISHNAN,K.DUDA,M.S.COHEN, JRNL AUTH 2 R.L.MAGLATHLIN,J.M.MCFARLAND,R.M.MILLER,M.FRODIN,J.TAUNTON JRNL TITL REVERSIBLE TARGETING OF NONCATALYTIC CYSTEINES WITH JRNL TITL 2 CHEMICALLY TUNED ELECTROPHILES. JRNL REF NAT.CHEM.BIOL. V. 8 471 2012 JRNL REFN ISSN 1552-4450 JRNL PMID 22466421 JRNL DOI 10.1038/NCHEMBIO.925 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_613) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 13506 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1350 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.5785 - 5.1664 0.99 1379 154 0.2168 0.3005 REMARK 3 2 5.1664 - 4.1025 0.98 1258 140 0.1728 0.1885 REMARK 3 3 4.1025 - 3.5844 0.98 1216 134 0.1938 0.2125 REMARK 3 4 3.5844 - 3.2569 0.98 1225 137 0.2068 0.2899 REMARK 3 5 3.2569 - 3.0236 0.98 1201 133 0.2322 0.2786 REMARK 3 6 3.0236 - 2.8454 0.98 1186 132 0.2422 0.2791 REMARK 3 7 2.8454 - 2.7029 0.97 1186 131 0.2500 0.3387 REMARK 3 8 2.7029 - 2.5853 0.97 1153 128 0.2736 0.3487 REMARK 3 9 2.5853 - 2.4858 0.98 1170 130 0.2961 0.3664 REMARK 3 10 2.4858 - 2.4000 0.97 1182 131 0.3309 0.3869 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 52.18 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 62.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.34760 REMARK 3 B22 (A**2) : 6.34760 REMARK 3 B33 (A**2) : -12.69530 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2460 REMARK 3 ANGLE : 1.263 3334 REMARK 3 CHIRALITY : 0.086 367 REMARK 3 PLANARITY : 0.005 426 REMARK 3 DIHEDRAL : 16.794 907 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: chain 'A' and (resseq 415:594) REMARK 3 ORIGIN FOR THE GROUP (A): -27.4863 17.0594 -15.2539 REMARK 3 T TENSOR REMARK 3 T11: 0.5147 T22: 0.4861 REMARK 3 T33: 0.3215 T12: 0.2261 REMARK 3 T13: -0.0158 T23: 0.0170 REMARK 3 L TENSOR REMARK 3 L11: 1.2449 L22: 1.6096 REMARK 3 L33: 1.8805 L12: 0.3446 REMARK 3 L13: -0.9578 L23: 0.5192 REMARK 3 S TENSOR REMARK 3 S11: -0.1905 S12: -0.4098 S13: -0.1000 REMARK 3 S21: 0.3406 S22: 0.1312 S23: 0.0641 REMARK 3 S31: 0.4982 S32: 0.3212 S33: -0.0600 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: chain 'A' and (resseq 595:713) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1278 26.5255 -28.5027 REMARK 3 T TENSOR REMARK 3 T11: 0.3025 T22: 0.6269 REMARK 3 T33: 0.3601 T12: -0.0013 REMARK 3 T13: -0.0171 T23: -0.0653 REMARK 3 L TENSOR REMARK 3 L11: 1.1080 L22: 2.5661 REMARK 3 L33: 2.3975 L12: -0.8653 REMARK 3 L13: -0.2553 L23: 0.7852 REMARK 3 S TENSOR REMARK 3 S11: -0.1146 S12: -0.1769 S13: 0.0877 REMARK 3 S21: -0.3004 S22: 0.4632 S23: -0.1390 REMARK 3 S31: -0.3982 S32: 0.6415 S33: -0.1452 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4D9T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JAN-12. REMARK 100 THE RCSB ID CODE IS RCSB070062. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE FLAT CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13507 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 36.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 16.000 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : 0.11800 REMARK 200 FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS, PH 8.5, 25% PEG 3350, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 147.05000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 23.35000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 23.35000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 73.52500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 23.35000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 23.35000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 220.57500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 23.35000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 23.35000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 73.52500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 23.35000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 23.35000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 220.57500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 147.05000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 -46.70000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 46.70000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 399 REMARK 465 GLN A 400 REMARK 465 THR A 401 REMARK 465 VAL A 402 REMARK 465 GLY A 403 REMARK 465 VAL A 404 REMARK 465 HIS A 405 REMARK 465 SER A 406 REMARK 465 ILE A 407 REMARK 465 VAL A 408 REMARK 465 GLN A 409 REMARK 465 GLN A 410 REMARK 465 LEU A 411 REMARK 465 HIS A 412 REMARK 465 ARG A 413 REMARK 465 ASN A 414 REMARK 465 GLN A 714 REMARK 465 SER A 715 REMARK 465 PRO A 716 REMARK 465 VAL A 717 REMARK 465 LEU A 718 REMARK 465 GLU A 719 REMARK 465 PRO A 720 REMARK 465 VAL A 721 REMARK 465 GLY A 722 REMARK 465 ARG A 723 REMARK 465 SER A 724 REMARK 465 THR A 725 REMARK 465 LEU A 726 REMARK 465 ALA A 727 REMARK 465 GLN A 728 REMARK 465 ARG A 729 REMARK 465 ARG A 730 REMARK 465 GLY A 731 REMARK 465 ILE A 732 REMARK 465 LYS A 733 REMARK 465 LYS A 734 REMARK 465 ILE A 735 REMARK 465 THR A 736 REMARK 465 SER A 737 REMARK 465 THR A 738 REMARK 465 ALA A 739 REMARK 465 LEU A 740 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 415 OG REMARK 470 LYS A 487 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1020 O HOH A 1022 2.06 REMARK 500 O GLN A 533 NE2 GLN A 567 2.11 REMARK 500 O ALA A 565 O HOH A 1016 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CB CYS A 579 SG CYS A 579 7465 1.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 416 -65.46 -125.30 REMARK 500 GLN A 417 147.43 -172.64 REMARK 500 LYS A 425 -132.11 -104.41 REMARK 500 VAL A 482 146.85 -172.29 REMARK 500 ARG A 507 28.84 -78.19 REMARK 500 ARG A 538 -16.03 81.48 REMARK 500 GLU A 588 -5.76 -55.96 REMARK 500 HIS A 681 38.57 -94.85 REMARK 500 TRP A 682 -36.06 -39.72 REMARK 500 ALA A 695 59.46 -152.04 REMARK 500 ARG A 712 32.02 -70.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 901 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 471 O REMARK 620 2 ILE A 476 O 115.3 REMARK 620 3 THR A 478 OG1 96.6 98.7 REMARK 620 4 HIS A 473 O 107.3 78.0 154.9 REMARK 620 5 HOH A1007 O 161.3 80.5 70.0 84.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0JG A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 901 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4D9U RELATED DB: PDB DBREF 4D9T A 399 740 UNP P51812 KS6A3_HUMAN 399 740 SEQADV 4D9T GLU A 591 UNP P51812 LYS 591 CONFLICT SEQRES 1 A 342 MET GLN THR VAL GLY VAL HIS SER ILE VAL GLN GLN LEU SEQRES 2 A 342 HIS ARG ASN SER ILE GLN PHE THR ASP GLY TYR GLU VAL SEQRES 3 A 342 LYS GLU ASP ILE GLY VAL GLY SER TYR SER VAL CYS LYS SEQRES 4 A 342 ARG CYS ILE HIS LYS ALA THR ASN MET GLU PHE ALA VAL SEQRES 5 A 342 LYS ILE ILE ASP LYS SER LYS ARG ASP PRO THR GLU GLU SEQRES 6 A 342 ILE GLU ILE LEU LEU ARG TYR GLY GLN HIS PRO ASN ILE SEQRES 7 A 342 ILE THR LEU LYS ASP VAL TYR ASP ASP GLY LYS TYR VAL SEQRES 8 A 342 TYR VAL VAL THR GLU LEU MET LYS GLY GLY GLU LEU LEU SEQRES 9 A 342 ASP LYS ILE LEU ARG GLN LYS PHE PHE SER GLU ARG GLU SEQRES 10 A 342 ALA SER ALA VAL LEU PHE THR ILE THR LYS THR VAL GLU SEQRES 11 A 342 TYR LEU HIS ALA GLN GLY VAL VAL HIS ARG ASP LEU LYS SEQRES 12 A 342 PRO SER ASN ILE LEU TYR VAL ASP GLU SER GLY ASN PRO SEQRES 13 A 342 GLU SER ILE ARG ILE CYS ASP PHE GLY PHE ALA LYS GLN SEQRES 14 A 342 LEU ARG ALA GLU ASN GLY LEU LEU MET THR PRO CYS TYR SEQRES 15 A 342 THR ALA ASN PHE VAL ALA PRO GLU VAL LEU GLU ARG GLN SEQRES 16 A 342 GLY TYR ASP ALA ALA CYS ASP ILE TRP SER LEU GLY VAL SEQRES 17 A 342 LEU LEU TYR THR MET LEU THR GLY TYR THR PRO PHE ALA SEQRES 18 A 342 ASN GLY PRO ASP ASP THR PRO GLU GLU ILE LEU ALA ARG SEQRES 19 A 342 ILE GLY SER GLY LYS PHE SER LEU SER GLY GLY TYR TRP SEQRES 20 A 342 ASN SER VAL SER ASP THR ALA LYS ASP LEU VAL SER LYS SEQRES 21 A 342 MET LEU HIS VAL ASP PRO HIS GLN ARG LEU THR ALA ALA SEQRES 22 A 342 LEU VAL LEU ARG HIS PRO TRP ILE VAL HIS TRP ASP GLN SEQRES 23 A 342 LEU PRO GLN TYR GLN LEU ASN ARG GLN ASP ALA PRO HIS SEQRES 24 A 342 LEU VAL LYS GLY ALA MET ALA ALA THR TYR SER ALA LEU SEQRES 25 A 342 ASN ARG ASN GLN SER PRO VAL LEU GLU PRO VAL GLY ARG SEQRES 26 A 342 SER THR LEU ALA GLN ARG ARG GLY ILE LYS LYS ILE THR SEQRES 27 A 342 SER THR ALA LEU HET 0JG A 900 29 HET NA A 901 1 HETNAM 0JG METHYL (2S)-3-{4-AMINO-7-[(1E)-3-HYDROXYPROP-1-EN-1- HETNAM 2 0JG YL]-5-(4-METHYLPHENYL)-7H-PYRROLO[2,3-D]PYRIMIDIN-6- HETNAM 3 0JG YL}-2-CYANOPROPANOATE HETNAM NA SODIUM ION HETSYN 0JG (E)-METHYL 3-(4-AMINO-7-(3-HYDROXYPROPYL)-5-P-TOLYL-7H- HETSYN 2 0JG PYRROLO[2,3-D]PYRIMIDIN-6-YL)-2-CYANOACRYLATE FORMUL 2 0JG C21 H21 N5 O3 FORMUL 3 NA NA 1+ FORMUL 4 HOH *24(H2 O) HELIX 1 1 PRO A 460 GLY A 471 1 12 HELIX 2 2 GLU A 500 ARG A 507 1 8 HELIX 3 3 SER A 512 GLN A 533 1 22 HELIX 4 4 LYS A 541 SER A 543 5 3 HELIX 5 5 ASN A 553 GLU A 555 5 3 HELIX 6 6 ALA A 586 GLY A 614 1 29 HELIX 7 7 THR A 625 GLY A 636 1 12 HELIX 8 8 SER A 649 LEU A 660 1 12 HELIX 9 9 THR A 669 LEU A 674 1 6 HELIX 10 10 HIS A 676 HIS A 681 1 6 HELIX 11 11 TRP A 682 LEU A 685 5 4 HELIX 12 12 ALA A 695 ASN A 711 1 17 SHEET 1 A 5 TYR A 422 VAL A 430 0 SHEET 2 A 5 SER A 434 HIS A 441 -1 O CYS A 436 N ILE A 428 SHEET 3 A 5 MET A 446 ASP A 454 -1 O PHE A 448 N CYS A 439 SHEET 4 A 5 TYR A 488 GLU A 494 -1 O VAL A 491 N LYS A 451 SHEET 5 A 5 LEU A 479 ASP A 484 -1 N LYS A 480 O VAL A 492 SHEET 1 B 2 VAL A 535 VAL A 536 0 SHEET 2 B 2 LYS A 566 GLN A 567 -1 O LYS A 566 N VAL A 536 SHEET 1 C 2 ILE A 545 TYR A 547 0 SHEET 2 C 2 ILE A 557 ILE A 559 -1 O ARG A 558 N LEU A 546 SSBOND 1 CYS A 579 CYS A 579 1555 7465 2.02 LINK O GLY A 471 NA NA A 901 1555 1555 2.28 LINK O ILE A 476 NA NA A 901 1555 1555 2.31 LINK OG1 THR A 478 NA NA A 901 1555 1555 2.47 LINK O HIS A 473 NA NA A 901 1555 1555 2.50 LINK NA NA A 901 O HOH A1007 1555 1555 2.93 SITE 1 AC1 11 ILE A 428 SER A 434 CYS A 436 ALA A 449 SITE 2 AC1 11 LYS A 451 VAL A 491 THR A 493 GLU A 494 SITE 3 AC1 11 MET A 496 CYS A 560 ASP A 561 SITE 1 AC2 5 GLY A 471 HIS A 473 ILE A 476 THR A 478 SITE 2 AC2 5 HOH A1007 CRYST1 46.700 46.700 294.100 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021413 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021413 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003400 0.00000