HEADER TRANSFERASE/DNA 12-JAN-12 4DA4 TITLE STRUCTURE OF MOUSE DNMT1 (731-1602) BOUND TO HEMIMETHYLATED CPG DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (CYTOSINE-5)-METHYLTRANSFERASE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 731-1602; COMPND 5 SYNONYM: DNMT1, MET-1, DNA METHYLTRANSFERASE MMUI, DNA MTASE MMUI, COMPND 6 M.MMUI, MCMT; COMPND 7 EC: 2.1.1.37; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA_UPPER_STRAND; COMPND 11 CHAIN: C, E; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA_LOWER_STRAND; COMPND 15 CHAIN: D, F; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: DNMT1, DNMT, MET1, UIM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIL; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 OTHER_DETAILS: CHEMICALLY SYNTHESIZED; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 OTHER_DETAILS: CHEMICALLY SYNTHESIZED KEYWDS MAINTENANCE DNA METHYLATION, COVALENT COMPLEX, TRANSFERASE-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.SONG,D.J.PATEL REVDAT 2 28-FEB-24 4DA4 1 REMARK SEQADV LINK REVDAT 1 22-FEB-12 4DA4 0 JRNL AUTH J.SONG,M.TEPLOVA,S.ISHIBE-MURAKAMI,D.J.PATEL JRNL TITL STRUCTURE-BASED MECHANISTIC INSIGHTS INTO DNMT1-MEDIATED JRNL TITL 2 MAINTENANCE DNA METHYLATION. JRNL REF SCIENCE V. 335 709 2012 JRNL REFN ISSN 0036-8075 JRNL PMID 22323818 JRNL DOI 10.1126/SCIENCE.1214453 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 77070 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 3882 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.4670 - 7.8722 0.94 2587 123 0.1703 0.1829 REMARK 3 2 7.8722 - 6.2565 0.96 2583 146 0.2136 0.2707 REMARK 3 3 6.2565 - 5.4679 0.96 2573 130 0.1995 0.2078 REMARK 3 4 5.4679 - 4.9691 0.96 2561 160 0.1741 0.2289 REMARK 3 5 4.9691 - 4.6135 0.97 2623 126 0.1502 0.1909 REMARK 3 6 4.6135 - 4.3418 0.97 2586 155 0.1419 0.1879 REMARK 3 7 4.3418 - 4.1246 0.98 2611 148 0.1482 0.1874 REMARK 3 8 4.1246 - 3.9453 0.98 2628 142 0.1523 0.2223 REMARK 3 9 3.9453 - 3.7935 0.98 2626 146 0.1698 0.2288 REMARK 3 10 3.7935 - 3.6627 0.98 2633 145 0.1834 0.2319 REMARK 3 11 3.6627 - 3.5482 0.98 2599 148 0.1946 0.2521 REMARK 3 12 3.5482 - 3.4469 0.99 2625 152 0.1969 0.2537 REMARK 3 13 3.4469 - 3.3562 0.98 2652 125 0.1928 0.2736 REMARK 3 14 3.3562 - 3.2743 0.99 2650 118 0.1931 0.2169 REMARK 3 15 3.2743 - 3.1999 0.99 2633 121 0.1900 0.2174 REMARK 3 16 3.1999 - 3.1319 0.99 2656 148 0.1998 0.2510 REMARK 3 17 3.1319 - 3.0692 0.98 2610 143 0.2033 0.2318 REMARK 3 18 3.0692 - 3.0114 0.98 2610 137 0.2088 0.2925 REMARK 3 19 3.0114 - 2.9576 0.99 2634 144 0.2205 0.2890 REMARK 3 20 2.9576 - 2.9075 0.99 2614 132 0.2426 0.3451 REMARK 3 21 2.9075 - 2.8606 0.98 2659 120 0.2540 0.2948 REMARK 3 22 2.8606 - 2.8166 0.99 2609 147 0.2602 0.3280 REMARK 3 23 2.8166 - 2.7752 0.98 2648 132 0.2604 0.3374 REMARK 3 24 2.7752 - 2.7361 0.99 2596 138 0.2644 0.3441 REMARK 3 25 2.7361 - 2.6991 0.98 2647 143 0.2897 0.3441 REMARK 3 26 2.6991 - 2.6641 0.99 2623 126 0.2891 0.4005 REMARK 3 27 2.6641 - 2.6308 0.98 2588 151 0.3091 0.3539 REMARK 3 28 2.6308 - 2.6000 0.95 2524 136 0.2997 0.3395 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 38.40 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.820 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 12.31460 REMARK 3 B22 (A**2) : -6.52410 REMARK 3 B33 (A**2) : -5.79050 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.45070 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 14684 REMARK 3 ANGLE : 1.190 20142 REMARK 3 CHIRALITY : 0.088 2131 REMARK 3 PLANARITY : 0.005 2467 REMARK 3 DIHEDRAL : 17.534 5456 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DA4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000070073. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SI MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77126 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09600 REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.47400 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3 MM TCEP, 0.1 M SODIUM CITRATE, PH REMARK 280 4.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 76.02100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 730 REMARK 465 LYS A 731 REMARK 465 THR A 852 REMARK 465 ASP A 853 REMARK 465 PRO A 854 REMARK 465 GLU A 855 REMARK 465 THR A 856 REMARK 465 THR A 857 REMARK 465 LEU A 858 REMARK 465 PRO A 859 REMARK 465 GLY A 860 REMARK 465 ALA A 861 REMARK 465 LYS A 1112 REMARK 465 GLY A 1113 REMARK 465 LYS A 1114 REMARK 465 GLY A 1115 REMARK 465 LYS A 1116 REMARK 465 GLY A 1117 REMARK 465 LYS A 1118 REMARK 465 GLY A 1119 REMARK 465 LYS A 1120 REMARK 465 GLY A 1121 REMARK 465 LYS A 1122 REMARK 465 GLY A 1123 REMARK 465 LYS A 1124 REMARK 465 HIS A 1125 REMARK 465 GLN A 1126 REMARK 465 VAL A 1127 REMARK 465 SER A 1128 REMARK 465 GLU A 1129 REMARK 465 PRO A 1130 REMARK 465 LYS A 1131 REMARK 465 GLU A 1132 REMARK 465 PRO A 1133 REMARK 465 GLU A 1134 REMARK 465 ALA A 1135 REMARK 465 ALA A 1136 REMARK 465 SER A 1601 REMARK 465 ALA A 1602 REMARK 465 SER B 730 REMARK 465 LYS B 731 REMARK 465 THR B 852 REMARK 465 ASP B 853 REMARK 465 PRO B 854 REMARK 465 GLU B 855 REMARK 465 THR B 856 REMARK 465 THR B 857 REMARK 465 LEU B 858 REMARK 465 PRO B 859 REMARK 465 GLY B 860 REMARK 465 ALA B 861 REMARK 465 GLU B 862 REMARK 465 ASP B 863 REMARK 465 LYS B 1112 REMARK 465 GLY B 1113 REMARK 465 LYS B 1114 REMARK 465 GLY B 1115 REMARK 465 LYS B 1116 REMARK 465 GLY B 1117 REMARK 465 LYS B 1118 REMARK 465 GLY B 1119 REMARK 465 LYS B 1120 REMARK 465 GLY B 1121 REMARK 465 LYS B 1122 REMARK 465 GLY B 1123 REMARK 465 LYS B 1124 REMARK 465 HIS B 1125 REMARK 465 GLN B 1126 REMARK 465 VAL B 1127 REMARK 465 SER B 1128 REMARK 465 GLU B 1129 REMARK 465 PRO B 1130 REMARK 465 LYS B 1131 REMARK 465 GLU B 1132 REMARK 465 PRO B 1133 REMARK 465 GLU B 1134 REMARK 465 ALA B 1135 REMARK 465 ALA B 1136 REMARK 465 SER B 1601 REMARK 465 ALA B 1602 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 735 OG REMARK 470 LYS A 742 CG CD CE NZ REMARK 470 GLU A 745 CG CD OE1 OE2 REMARK 470 LYS A 775 CG CD CE NZ REMARK 470 GLU A 844 CG CD OE1 OE2 REMARK 470 GLU A 862 CG CD OE1 OE2 REMARK 470 ASP A 863 CG OD1 OD2 REMARK 470 LYS A 885 CG CD CE NZ REMARK 470 GLU A 890 CG CD OE1 OE2 REMARK 470 LYS A 893 CG CD CE NZ REMARK 470 VAL A 960 CG1 CG2 REMARK 470 LYS A 961 CG CD CE NZ REMARK 470 ARG A 962 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 965 CG CD CE NZ REMARK 470 ASP A 966 CG OD1 OD2 REMARK 470 VAL A 968 CG1 CG2 REMARK 470 LYS A1008 CG CD CE NZ REMARK 470 LYS A1009 CG CD CE NZ REMARK 470 LYS A1011 CG CD CE NZ REMARK 470 LEU A1072 CG CD1 CD2 REMARK 470 GLN A1076 CG CD OE1 NE2 REMARK 470 GLN A1080 CG CD OE1 NE2 REMARK 470 ASN A1111 CG OD1 ND2 REMARK 470 ILE A1137 CG1 CG2 CD1 REMARK 470 LYS A1138 CG CD CE NZ REMARK 470 THR A1242 OG1 CG2 REMARK 470 ASP A1451 CG OD1 OD2 REMARK 470 VAL A1453 CG1 CG2 REMARK 470 SER A1495 OG REMARK 470 SER A1600 OG REMARK 470 SER B 735 OG REMARK 470 SER B 773 OG REMARK 470 LYS B 775 CG CD CE NZ REMARK 470 GLU B 844 CG CD OE1 OE2 REMARK 470 LYS B 885 CG CD CE NZ REMARK 470 GLU B 890 CG CD OE1 OE2 REMARK 470 LYS B 913 CG CD CE NZ REMARK 470 VAL B 960 CG1 CG2 REMARK 470 LYS B 961 CG CD CE NZ REMARK 470 ARG B 962 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 964 CG CD CE NZ REMARK 470 LYS B 965 CG CD CE NZ REMARK 470 ASP B 966 CG OD1 OD2 REMARK 470 LYS B1008 CG CD CE NZ REMARK 470 LYS B1009 CG CD CE NZ REMARK 470 LYS B1011 CG CD CE NZ REMARK 470 LEU B1072 CG CD1 CD2 REMARK 470 GLN B1080 CG CD OE1 NE2 REMARK 470 ASN B1111 CG OD1 ND2 REMARK 470 ILE B1137 CG1 CG2 CD1 REMARK 470 LYS B1138 CG CD CE NZ REMARK 470 ARG B1241 CG CD NE CZ NH1 NH2 REMARK 470 THR B1242 OG1 CG2 REMARK 470 LYS B1351 CG CD CE NZ REMARK 470 SER B1406 OG REMARK 470 ARG B1448 CG CD NE CZ NH1 NH2 REMARK 470 ASP B1451 CG OD1 OD2 REMARK 470 VAL B1453 CG1 CG2 REMARK 470 SER B1495 OG REMARK 470 SER B1600 OG REMARK 470 C49 D 18 SG REMARK 470 C49 F 18 SG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TRP A 846 O HOH A 2134 1.81 REMARK 500 OE2 GLU B 881 O HOH B 1935 1.88 REMARK 500 OD2 ASP B 1174 O HOH B 1849 1.91 REMARK 500 N ASN A 1392 O HOH A 1940 1.93 REMARK 500 O3' DC E 5 O HOH E 110 1.96 REMARK 500 OD2 ASP A 1174 O HOH A 1957 1.98 REMARK 500 O HOH B 1900 O HOH B 1901 1.98 REMARK 500 NE ARG A 1366 O HOH A 1897 1.99 REMARK 500 NE ARG B 1401 O HOH B 1990 2.04 REMARK 500 O TYR B 1391 O HOH B 2140 2.05 REMARK 500 N TRP B 1168 O HOH B 2138 2.05 REMARK 500 NH2 ARG A 1553 O HOH A 1865 2.06 REMARK 500 O LYS B 1352 O HOH B 1835 2.06 REMARK 500 O HOH A 1903 O HOH A 1907 2.06 REMARK 500 OD2 ASP A 805 O HOH A 1929 2.07 REMARK 500 NH2 ARG B 1371 OD1 ASP B 1522 2.07 REMARK 500 O HOH A 2080 O HOH A 2142 2.08 REMARK 500 N3 DG C 3 O HOH C 105 2.09 REMARK 500 O HOH B 1920 O HOH B 1951 2.09 REMARK 500 NH2 ARG B 924 O HOH B 1937 2.10 REMARK 500 O HOH A 2019 O HOH A 2053 2.10 REMARK 500 O ASN A 1580 O HOH A 1834 2.10 REMARK 500 OP1 DA F 15 O HOH F 111 2.12 REMARK 500 N ASN B 1392 O HOH B 1955 2.13 REMARK 500 OD2 ASP B 1350 O HOH B 2159 2.13 REMARK 500 O PRO A 967 O HOH A 2005 2.13 REMARK 500 N3 DG E 1 O HOH E 109 2.14 REMARK 500 ND1 HIS B 1504 O HOH E 110 2.14 REMARK 500 SG CYS B 1229 C6 C49 F 18 2.15 REMARK 500 OE1 GLU B 1028 O HOH B 2036 2.15 REMARK 500 O HIS A 1456 O HOH A 2174 2.15 REMARK 500 O HOH A 1811 O HOH A 1866 2.16 REMARK 500 OE2 GLU A 881 O HOH A 2101 2.16 REMARK 500 OD1 ASN A 1248 O HOH A 2026 2.16 REMARK 500 OD2 ASP A 1414 O HOH A 2138 2.16 REMARK 500 O HOH A 2163 O HOH A 2190 2.17 REMARK 500 O ARG A 1262 O HOH A 2135 2.17 REMARK 500 NH1 ARG B 1401 O HOH B 1830 2.17 REMARK 500 OD1 ASP A 771 O HOH A 2094 2.18 REMARK 500 OP2 DC F 21 O HOH F 110 2.18 REMARK 500 O HOH A 2193 O HOH A 2195 2.19 REMARK 500 N TRP A 1168 O HOH A 1844 2.19 REMARK 500 O GLY B 1110 O HOH B 1961 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC D 14 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 DC E 5 O4' - C4' - C3' ANGL. DEV. = -5.0 DEGREES REMARK 500 DC E 5 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 DT E 10 N3 - C4 - O4 ANGL. DEV. = 3.7 DEGREES REMARK 500 DC F 14 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 DG F 19 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC F 21 C3' - C2' - C1' ANGL. DEV. = -5.5 DEGREES REMARK 500 DC F 22 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 742 72.03 42.72 REMARK 500 GLU A 757 -17.63 75.13 REMARK 500 ASP A 863 80.21 60.94 REMARK 500 ILE A 918 -64.53 -107.06 REMARK 500 PRO A 959 -173.02 -52.52 REMARK 500 ASP A 966 167.17 172.60 REMARK 500 TYR A 973 73.34 -118.16 REMARK 500 ASP A 982 -1.30 74.79 REMARK 500 SER A1033 -143.69 54.92 REMARK 500 TRP A1168 86.57 66.07 REMARK 500 ASP A1350 -6.51 74.71 REMARK 500 SER A1361 -60.35 -130.81 REMARK 500 ASP A1451 -130.69 48.04 REMARK 500 GLU A1490 -10.80 87.58 REMARK 500 GLU A1545 -57.56 -130.31 REMARK 500 ARG A1548 160.39 174.79 REMARK 500 LYS B 742 71.66 41.67 REMARK 500 ASP B 771 -64.10 -101.21 REMARK 500 THR B 889 -79.11 -109.93 REMARK 500 GLU B 890 -63.82 -133.82 REMARK 500 LEU B 915 -62.82 -93.71 REMARK 500 ILE B 918 -69.38 -101.79 REMARK 500 LYS B 964 76.80 46.66 REMARK 500 TYR B 973 79.90 -119.16 REMARK 500 ASP B 982 -2.87 70.37 REMARK 500 SER B1033 -144.42 56.11 REMARK 500 TRP B1168 87.05 67.56 REMARK 500 ASP B1350 -4.04 76.62 REMARK 500 ASP B1451 -134.25 59.16 REMARK 500 GLU B1490 -8.81 88.08 REMARK 500 PRO B1532 85.83 -66.24 REMARK 500 GLU B1545 -56.36 -128.01 REMARK 500 ARG B1548 163.42 174.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 773 SER A 774 149.18 REMARK 500 GLY A 864 LYS A 865 149.07 REMARK 500 SER A 958 PRO A 959 -142.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1703 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 796 NE2 REMARK 620 2 CYS A 823 SG 102.4 REMARK 620 3 CYS A 897 SG 106.8 121.7 REMARK 620 4 CYS A 900 SG 104.5 107.7 112.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1702 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1479 SG REMARK 620 2 CYS A1481 SG 109.2 REMARK 620 3 CYS A1487 SG 118.4 105.5 REMARK 620 4 HIS A1504 NE2 113.7 100.1 108.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1703 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 796 NE2 REMARK 620 2 CYS B 823 SG 103.7 REMARK 620 3 CYS B 897 SG 107.7 127.3 REMARK 620 4 CYS B 900 SG 103.1 113.6 99.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1702 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B1479 SG REMARK 620 2 CYS B1481 SG 107.3 REMARK 620 3 CYS B1487 SG 117.5 107.4 REMARK 620 4 HIS B1504 NE2 114.7 100.7 107.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A 1701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH B 1701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT B 1704 DBREF 4DA4 A 731 1602 UNP P13864 DNMT1_MOUSE 731 1602 DBREF 4DA4 B 731 1602 UNP P13864 DNMT1_MOUSE 731 1602 DBREF 4DA4 C 1 12 PDB 4DA4 4DA4 1 12 DBREF 4DA4 E 1 12 PDB 4DA4 4DA4 1 12 DBREF 4DA4 D 13 24 PDB 4DA4 4DA4 13 24 DBREF 4DA4 F 13 24 PDB 4DA4 4DA4 13 24 SEQADV 4DA4 SER A 730 UNP P13864 EXPRESSION TAG SEQADV 4DA4 SER B 730 UNP P13864 EXPRESSION TAG SEQRES 1 A 873 SER LYS ASP ARG ILE SER TRP LEU GLY GLN PRO MET LYS SEQRES 2 A 873 ILE GLU GLU ASN ARG THR TYR TYR GLN LYS VAL SER ILE SEQRES 3 A 873 ASP GLU GLU MET LEU GLU VAL GLY ASP CYS VAL SER VAL SEQRES 4 A 873 ILE PRO ASP ASP SER SER LYS PRO LEU TYR LEU ALA ARG SEQRES 5 A 873 VAL THR ALA LEU TRP GLU ASP LYS ASN GLY GLN MET MET SEQRES 6 A 873 PHE HIS ALA HIS TRP PHE CYS ALA GLY THR ASP THR VAL SEQRES 7 A 873 LEU GLY ALA THR SER ASP PRO LEU GLU LEU PHE LEU VAL SEQRES 8 A 873 GLY GLU CYS GLU ASN MET GLN LEU SER TYR ILE HIS SER SEQRES 9 A 873 LYS VAL LYS VAL ILE TYR LYS ALA PRO SER GLU ASN TRP SEQRES 10 A 873 ALA MET GLU GLY GLY THR ASP PRO GLU THR THR LEU PRO SEQRES 11 A 873 GLY ALA GLU ASP GLY LYS THR TYR PHE PHE GLN LEU TRP SEQRES 12 A 873 TYR ASN GLN GLU TYR ALA ARG PHE GLU SER PRO PRO LYS SEQRES 13 A 873 THR GLN PRO THR GLU ASP ASN LYS HIS LYS PHE CYS LEU SEQRES 14 A 873 SER CYS ILE ARG LEU ALA GLU LEU ARG GLN LYS GLU MET SEQRES 15 A 873 PRO LYS VAL LEU GLU GLN ILE GLU GLU VAL ASP GLY ARG SEQRES 16 A 873 VAL TYR CYS SER SER ILE THR LYS ASN GLY VAL VAL TYR SEQRES 17 A 873 ARG LEU GLY ASP SER VAL TYR LEU PRO PRO GLU ALA PHE SEQRES 18 A 873 THR PHE ASN ILE LYS VAL ALA SER PRO VAL LYS ARG PRO SEQRES 19 A 873 LYS LYS ASP PRO VAL ASN GLU THR LEU TYR PRO GLU HIS SEQRES 20 A 873 TYR ARG LYS TYR SER ASP TYR ILE LYS GLY SER ASN LEU SEQRES 21 A 873 ASP ALA PRO GLU PRO TYR ARG ILE GLY ARG ILE LYS GLU SEQRES 22 A 873 ILE HIS CYS GLY LYS LYS LYS GLY LYS VAL ASN GLU ALA SEQRES 23 A 873 ASP ILE LYS LEU ARG LEU TYR LYS PHE TYR ARG PRO GLU SEQRES 24 A 873 ASN THR HIS ARG SER TYR ASN GLY SER TYR HIS THR ASP SEQRES 25 A 873 ILE ASN MET LEU TYR TRP SER ASP GLU GLU ALA VAL VAL SEQRES 26 A 873 ASN PHE SER ASP VAL GLN GLY ARG CYS THR VAL GLU TYR SEQRES 27 A 873 GLY GLU ASP LEU LEU GLU SER ILE GLN ASP TYR SER GLN SEQRES 28 A 873 GLY GLY PRO ASP ARG PHE TYR PHE LEU GLU ALA TYR ASN SEQRES 29 A 873 SER LYS THR LYS ASN PHE GLU ASP PRO PRO ASN HIS ALA SEQRES 30 A 873 ARG SER PRO GLY ASN LYS GLY LYS GLY LYS GLY LYS GLY SEQRES 31 A 873 LYS GLY LYS GLY LYS HIS GLN VAL SER GLU PRO LYS GLU SEQRES 32 A 873 PRO GLU ALA ALA ILE LYS LEU PRO LYS LEU ARG THR LEU SEQRES 33 A 873 ASP VAL PHE SER GLY CYS GLY GLY LEU SER GLU GLY PHE SEQRES 34 A 873 HIS GLN ALA GLY ILE SER GLU THR LEU TRP ALA ILE GLU SEQRES 35 A 873 MET TRP ASP PRO ALA ALA GLN ALA PHE ARG LEU ASN ASN SEQRES 36 A 873 PRO GLY THR THR VAL PHE THR GLU ASP CYS ASN VAL LEU SEQRES 37 A 873 LEU LYS LEU VAL MET ALA GLY GLU VAL THR ASN SER LEU SEQRES 38 A 873 GLY GLN ARG LEU PRO GLN LYS GLY ASP VAL GLU MET LEU SEQRES 39 A 873 CYS GLY GLY PRO PRO CYS GLN GLY PHE SER GLY MET ASN SEQRES 40 A 873 ARG PHE ASN SER ARG THR TYR SER LYS PHE LYS ASN SER SEQRES 41 A 873 LEU VAL VAL SER PHE LEU SER TYR CYS ASP TYR TYR ARG SEQRES 42 A 873 PRO ARG PHE PHE LEU LEU GLU ASN VAL ARG ASN PHE VAL SEQRES 43 A 873 SER TYR ARG ARG SER MET VAL LEU LYS LEU THR LEU ARG SEQRES 44 A 873 CYS LEU VAL ARG MET GLY TYR GLN CYS THR PHE GLY VAL SEQRES 45 A 873 LEU GLN ALA GLY GLN TYR GLY VAL ALA GLN THR ARG ARG SEQRES 46 A 873 ARG ALA ILE ILE LEU ALA ALA ALA PRO GLY GLU LYS LEU SEQRES 47 A 873 PRO LEU PHE PRO GLU PRO LEU HIS VAL PHE ALA PRO ARG SEQRES 48 A 873 ALA CYS GLN LEU SER VAL VAL VAL ASP ASP LYS LYS PHE SEQRES 49 A 873 VAL SER ASN ILE THR ARG LEU SER SER GLY PRO PHE ARG SEQRES 50 A 873 THR ILE THR VAL ARG ASP THR MET SER ASP LEU PRO GLU SEQRES 51 A 873 ILE GLN ASN GLY ALA SER ASN SER GLU ILE PRO TYR ASN SEQRES 52 A 873 GLY GLU PRO LEU SER TRP PHE GLN ARG GLN LEU ARG GLY SEQRES 53 A 873 SER HIS TYR GLN PRO ILE LEU ARG ASP HIS ILE CYS LYS SEQRES 54 A 873 ASP MET SER PRO LEU VAL ALA ALA ARG MET ARG HIS ILE SEQRES 55 A 873 PRO LEU PHE PRO GLY SER ASP TRP ARG ASP LEU PRO ASN SEQRES 56 A 873 ILE GLN VAL ARG LEU GLY ASP GLY VAL ILE ALA HIS LYS SEQRES 57 A 873 LEU GLN TYR THR PHE HIS ASP VAL LYS ASN GLY TYR SER SEQRES 58 A 873 SER THR GLY ALA LEU ARG GLY VAL CYS SER CYS ALA GLU SEQRES 59 A 873 GLY LYS ALA CYS ASP PRO GLU SER ARG GLN PHE SER THR SEQRES 60 A 873 LEU ILE PRO TRP CYS LEU PRO HIS THR GLY ASN ARG HIS SEQRES 61 A 873 ASN HIS TRP ALA GLY LEU TYR GLY ARG LEU GLU TRP ASP SEQRES 62 A 873 GLY PHE PHE SER THR THR VAL THR ASN PRO GLU PRO MET SEQRES 63 A 873 GLY LYS GLN GLY ARG VAL LEU HIS PRO GLU GLN HIS ARG SEQRES 64 A 873 VAL VAL SER VAL ARG GLU CYS ALA ARG SER GLN GLY PHE SEQRES 65 A 873 PRO ASP SER TYR ARG PHE PHE GLY ASN ILE LEU ASP ARG SEQRES 66 A 873 HIS ARG GLN VAL GLY ASN ALA VAL PRO PRO PRO LEU ALA SEQRES 67 A 873 LYS ALA ILE GLY LEU GLU ILE LYS LEU CYS LEU LEU SER SEQRES 68 A 873 SER ALA SEQRES 1 B 873 SER LYS ASP ARG ILE SER TRP LEU GLY GLN PRO MET LYS SEQRES 2 B 873 ILE GLU GLU ASN ARG THR TYR TYR GLN LYS VAL SER ILE SEQRES 3 B 873 ASP GLU GLU MET LEU GLU VAL GLY ASP CYS VAL SER VAL SEQRES 4 B 873 ILE PRO ASP ASP SER SER LYS PRO LEU TYR LEU ALA ARG SEQRES 5 B 873 VAL THR ALA LEU TRP GLU ASP LYS ASN GLY GLN MET MET SEQRES 6 B 873 PHE HIS ALA HIS TRP PHE CYS ALA GLY THR ASP THR VAL SEQRES 7 B 873 LEU GLY ALA THR SER ASP PRO LEU GLU LEU PHE LEU VAL SEQRES 8 B 873 GLY GLU CYS GLU ASN MET GLN LEU SER TYR ILE HIS SER SEQRES 9 B 873 LYS VAL LYS VAL ILE TYR LYS ALA PRO SER GLU ASN TRP SEQRES 10 B 873 ALA MET GLU GLY GLY THR ASP PRO GLU THR THR LEU PRO SEQRES 11 B 873 GLY ALA GLU ASP GLY LYS THR TYR PHE PHE GLN LEU TRP SEQRES 12 B 873 TYR ASN GLN GLU TYR ALA ARG PHE GLU SER PRO PRO LYS SEQRES 13 B 873 THR GLN PRO THR GLU ASP ASN LYS HIS LYS PHE CYS LEU SEQRES 14 B 873 SER CYS ILE ARG LEU ALA GLU LEU ARG GLN LYS GLU MET SEQRES 15 B 873 PRO LYS VAL LEU GLU GLN ILE GLU GLU VAL ASP GLY ARG SEQRES 16 B 873 VAL TYR CYS SER SER ILE THR LYS ASN GLY VAL VAL TYR SEQRES 17 B 873 ARG LEU GLY ASP SER VAL TYR LEU PRO PRO GLU ALA PHE SEQRES 18 B 873 THR PHE ASN ILE LYS VAL ALA SER PRO VAL LYS ARG PRO SEQRES 19 B 873 LYS LYS ASP PRO VAL ASN GLU THR LEU TYR PRO GLU HIS SEQRES 20 B 873 TYR ARG LYS TYR SER ASP TYR ILE LYS GLY SER ASN LEU SEQRES 21 B 873 ASP ALA PRO GLU PRO TYR ARG ILE GLY ARG ILE LYS GLU SEQRES 22 B 873 ILE HIS CYS GLY LYS LYS LYS GLY LYS VAL ASN GLU ALA SEQRES 23 B 873 ASP ILE LYS LEU ARG LEU TYR LYS PHE TYR ARG PRO GLU SEQRES 24 B 873 ASN THR HIS ARG SER TYR ASN GLY SER TYR HIS THR ASP SEQRES 25 B 873 ILE ASN MET LEU TYR TRP SER ASP GLU GLU ALA VAL VAL SEQRES 26 B 873 ASN PHE SER ASP VAL GLN GLY ARG CYS THR VAL GLU TYR SEQRES 27 B 873 GLY GLU ASP LEU LEU GLU SER ILE GLN ASP TYR SER GLN SEQRES 28 B 873 GLY GLY PRO ASP ARG PHE TYR PHE LEU GLU ALA TYR ASN SEQRES 29 B 873 SER LYS THR LYS ASN PHE GLU ASP PRO PRO ASN HIS ALA SEQRES 30 B 873 ARG SER PRO GLY ASN LYS GLY LYS GLY LYS GLY LYS GLY SEQRES 31 B 873 LYS GLY LYS GLY LYS HIS GLN VAL SER GLU PRO LYS GLU SEQRES 32 B 873 PRO GLU ALA ALA ILE LYS LEU PRO LYS LEU ARG THR LEU SEQRES 33 B 873 ASP VAL PHE SER GLY CYS GLY GLY LEU SER GLU GLY PHE SEQRES 34 B 873 HIS GLN ALA GLY ILE SER GLU THR LEU TRP ALA ILE GLU SEQRES 35 B 873 MET TRP ASP PRO ALA ALA GLN ALA PHE ARG LEU ASN ASN SEQRES 36 B 873 PRO GLY THR THR VAL PHE THR GLU ASP CYS ASN VAL LEU SEQRES 37 B 873 LEU LYS LEU VAL MET ALA GLY GLU VAL THR ASN SER LEU SEQRES 38 B 873 GLY GLN ARG LEU PRO GLN LYS GLY ASP VAL GLU MET LEU SEQRES 39 B 873 CYS GLY GLY PRO PRO CYS GLN GLY PHE SER GLY MET ASN SEQRES 40 B 873 ARG PHE ASN SER ARG THR TYR SER LYS PHE LYS ASN SER SEQRES 41 B 873 LEU VAL VAL SER PHE LEU SER TYR CYS ASP TYR TYR ARG SEQRES 42 B 873 PRO ARG PHE PHE LEU LEU GLU ASN VAL ARG ASN PHE VAL SEQRES 43 B 873 SER TYR ARG ARG SER MET VAL LEU LYS LEU THR LEU ARG SEQRES 44 B 873 CYS LEU VAL ARG MET GLY TYR GLN CYS THR PHE GLY VAL SEQRES 45 B 873 LEU GLN ALA GLY GLN TYR GLY VAL ALA GLN THR ARG ARG SEQRES 46 B 873 ARG ALA ILE ILE LEU ALA ALA ALA PRO GLY GLU LYS LEU SEQRES 47 B 873 PRO LEU PHE PRO GLU PRO LEU HIS VAL PHE ALA PRO ARG SEQRES 48 B 873 ALA CYS GLN LEU SER VAL VAL VAL ASP ASP LYS LYS PHE SEQRES 49 B 873 VAL SER ASN ILE THR ARG LEU SER SER GLY PRO PHE ARG SEQRES 50 B 873 THR ILE THR VAL ARG ASP THR MET SER ASP LEU PRO GLU SEQRES 51 B 873 ILE GLN ASN GLY ALA SER ASN SER GLU ILE PRO TYR ASN SEQRES 52 B 873 GLY GLU PRO LEU SER TRP PHE GLN ARG GLN LEU ARG GLY SEQRES 53 B 873 SER HIS TYR GLN PRO ILE LEU ARG ASP HIS ILE CYS LYS SEQRES 54 B 873 ASP MET SER PRO LEU VAL ALA ALA ARG MET ARG HIS ILE SEQRES 55 B 873 PRO LEU PHE PRO GLY SER ASP TRP ARG ASP LEU PRO ASN SEQRES 56 B 873 ILE GLN VAL ARG LEU GLY ASP GLY VAL ILE ALA HIS LYS SEQRES 57 B 873 LEU GLN TYR THR PHE HIS ASP VAL LYS ASN GLY TYR SER SEQRES 58 B 873 SER THR GLY ALA LEU ARG GLY VAL CYS SER CYS ALA GLU SEQRES 59 B 873 GLY LYS ALA CYS ASP PRO GLU SER ARG GLN PHE SER THR SEQRES 60 B 873 LEU ILE PRO TRP CYS LEU PRO HIS THR GLY ASN ARG HIS SEQRES 61 B 873 ASN HIS TRP ALA GLY LEU TYR GLY ARG LEU GLU TRP ASP SEQRES 62 B 873 GLY PHE PHE SER THR THR VAL THR ASN PRO GLU PRO MET SEQRES 63 B 873 GLY LYS GLN GLY ARG VAL LEU HIS PRO GLU GLN HIS ARG SEQRES 64 B 873 VAL VAL SER VAL ARG GLU CYS ALA ARG SER GLN GLY PHE SEQRES 65 B 873 PRO ASP SER TYR ARG PHE PHE GLY ASN ILE LEU ASP ARG SEQRES 66 B 873 HIS ARG GLN VAL GLY ASN ALA VAL PRO PRO PRO LEU ALA SEQRES 67 B 873 LYS ALA ILE GLY LEU GLU ILE LYS LEU CYS LEU LEU SER SEQRES 68 B 873 SER ALA SEQRES 1 C 12 DG DA DG DG DC 5CM DG DC DC DT DG DC SEQRES 1 D 12 DG DC DA DG DG C49 DG DG DC DC DT DC SEQRES 1 E 12 DG DA DG DG DC 5CM DG DC DC DT DG DC SEQRES 1 F 12 DG DC DA DG DG C49 DG DG DC DC DT DC MODRES 4DA4 5CM C 6 DC MODRES 4DA4 C49 D 18 DC MODRES 4DA4 5CM E 6 DC MODRES 4DA4 C49 F 18 DC HET 5CM C 6 20 HET C49 D 18 21 HET 5CM E 6 20 HET C49 F 18 21 HET SAH A1701 26 HET ZN A1702 1 HET ZN A1703 1 HET SAH B1701 26 HET ZN B1702 1 HET ZN B1703 1 HET CIT B1704 13 HETNAM 5CM 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE HETNAM C49 4-THIO,5-FLUORO,5-METHYL-2'-DEOXY-CYTIDINE-5'- HETNAM 2 C49 MONOPHOSPHATE HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM ZN ZINC ION HETNAM CIT CITRIC ACID FORMUL 3 5CM 2(C10 H16 N3 O7 P) FORMUL 4 C49 2(C10 H15 F N3 O7 P S) FORMUL 7 SAH 2(C14 H20 N6 O5 S) FORMUL 8 ZN 4(ZN 2+) FORMUL 13 CIT C6 H8 O7 FORMUL 14 HOH *860(H2 O) HELIX 1 1 THR A 804 THR A 806 5 3 HELIX 2 2 LEU A 808 SER A 812 5 5 HELIX 3 3 ASN A 845 GLU A 849 5 5 HELIX 4 4 CYS A 897 MET A 911 1 15 HELIX 5 5 PRO A 946 PHE A 950 5 5 HELIX 6 6 GLU A 975 TYR A 980 5 6 HELIX 7 7 ARG A 1026 THR A 1030 5 5 HELIX 8 8 SER A 1057 VAL A 1059 5 3 HELIX 9 9 GLU A 1069 LEU A 1071 5 3 HELIX 10 10 SER A 1074 GLN A 1080 1 7 HELIX 11 11 PRO A 1103 ARG A 1107 5 5 HELIX 12 12 GLY A 1152 ALA A 1161 1 10 HELIX 13 13 TRP A 1173 ASN A 1184 1 12 HELIX 14 14 ASP A 1193 ALA A 1203 1 11 HELIX 15 15 ARG A 1241 ARG A 1262 1 22 HELIX 16 16 ASN A 1273 VAL A 1275 5 3 HELIX 17 17 SER A 1276 GLY A 1294 1 19 HELIX 18 18 GLY A 1305 GLY A 1308 5 4 HELIX 19 19 ALA A 1338 GLN A 1343 5 6 HELIX 20 20 THR A 1369 SER A 1375 1 7 HELIX 21 21 SER A 1397 GLY A 1405 1 9 HELIX 22 22 SER A 1421 ILE A 1431 1 11 HELIX 23 23 ASP A 1438 LEU A 1442 5 5 HELIX 24 24 CYS A 1479 GLY A 1484 5 6 HELIX 25 25 TRP A 1500 GLY A 1506 1 7 HELIX 26 26 ASN A 1507 ALA A 1513 5 7 HELIX 27 27 SER A 1551 GLN A 1559 1 9 HELIX 28 28 ASN A 1570 ALA A 1581 1 12 HELIX 29 29 PRO A 1583 LEU A 1599 1 17 HELIX 30 30 THR B 804 THR B 806 5 3 HELIX 31 31 LEU B 808 SER B 812 5 5 HELIX 32 32 ASN B 845 GLU B 849 5 5 HELIX 33 33 CYS B 897 MET B 911 1 15 HELIX 34 34 PRO B 946 PHE B 950 5 5 HELIX 35 35 GLU B 975 TYR B 980 5 6 HELIX 36 36 ARG B 1026 THR B 1030 5 5 HELIX 37 37 SER B 1057 VAL B 1059 5 3 HELIX 38 38 GLU B 1069 LEU B 1071 5 3 HELIX 39 39 SER B 1074 GLY B 1081 1 8 HELIX 40 40 PRO B 1103 ARG B 1107 5 5 HELIX 41 41 GLY B 1152 ALA B 1161 1 10 HELIX 42 42 TRP B 1173 ASN B 1184 1 12 HELIX 43 43 ASP B 1193 ALA B 1203 1 11 HELIX 44 44 ARG B 1241 ARG B 1262 1 22 HELIX 45 45 ASN B 1273 VAL B 1275 5 3 HELIX 46 46 SER B 1276 GLY B 1294 1 19 HELIX 47 47 GLY B 1305 GLY B 1308 5 4 HELIX 48 48 ALA B 1338 CYS B 1342 5 5 HELIX 49 49 THR B 1369 SER B 1375 1 7 HELIX 50 50 SER B 1397 GLY B 1405 1 9 HELIX 51 51 SER B 1421 HIS B 1430 1 10 HELIX 52 52 ASP B 1438 LEU B 1442 5 5 HELIX 53 53 CYS B 1479 GLY B 1484 5 6 HELIX 54 54 TRP B 1500 GLY B 1506 1 7 HELIX 55 55 ASN B 1507 ALA B 1513 5 7 HELIX 56 56 SER B 1551 GLN B 1559 1 9 HELIX 57 57 ASN B 1570 ALA B 1581 1 12 HELIX 58 58 PRO B 1583 LEU B 1599 1 17 LINK O3' DC C 5 P 5CM C 6 1555 1555 1.61 LINK O3' 5CM C 6 P DG C 7 1555 1555 1.62 LINK O3' DG D 17 P C49 D 18 1555 1555 1.61 LINK O3' DC E 5 P 5CM E 6 1555 1555 1.61 LINK O3' 5CM E 6 P DG E 7 1555 1555 1.60 LINK O3' DG F 17 P C49 F 18 1555 1555 1.61 LINK NE2 HIS A 796 ZN ZN A1703 1555 1555 2.02 LINK SG CYS A 823 ZN ZN A1703 1555 1555 2.25 LINK SG CYS A 897 ZN ZN A1703 1555 1555 2.30 LINK SG CYS A 900 ZN ZN A1703 1555 1555 2.05 LINK SG CYS A1479 ZN ZN A1702 1555 1555 2.24 LINK SG CYS A1481 ZN ZN A1702 1555 1555 2.34 LINK SG CYS A1487 ZN ZN A1702 1555 1555 2.27 LINK NE2 HIS A1504 ZN ZN A1702 1555 1555 2.44 LINK NE2 HIS B 796 ZN ZN B1703 1555 1555 2.06 LINK SG CYS B 823 ZN ZN B1703 1555 1555 2.31 LINK SG CYS B 897 ZN ZN B1703 1555 1555 2.28 LINK SG CYS B 900 ZN ZN B1703 1555 1555 2.03 LINK SG CYS B1479 ZN ZN B1702 1555 1555 2.26 LINK SG CYS B1481 ZN ZN B1702 1555 1555 2.33 LINK SG CYS B1487 ZN ZN B1702 1555 1555 2.29 LINK NE2 HIS B1504 ZN ZN B1702 1555 1555 2.38 SITE 1 AC1 21 PHE A1148 SER A1149 GLY A1150 GLY A1152 SITE 2 AC1 21 GLY A1153 LEU A1154 GLU A1171 MET A1172 SITE 3 AC1 21 TRP A1173 ASP A1193 CYS A1194 GLY A1226 SITE 4 AC1 21 LYS A1247 LEU A1250 ALA A1581 VAL A1582 SITE 5 AC1 21 HOH A1805 HOH A1808 HOH A1834 HOH A1900 SITE 6 AC1 21 C49 D 18 SITE 1 AC2 4 CYS A1479 CYS A1481 CYS A1487 HIS A1504 SITE 1 AC3 4 HIS A 796 CYS A 823 CYS A 897 CYS A 900 SITE 1 AC4 23 PHE B1148 SER B1149 GLY B1150 GLY B1152 SITE 2 AC4 23 GLY B1153 LEU B1154 GLU B1171 MET B1172 SITE 3 AC4 23 TRP B1173 ASP B1193 CYS B1194 GLY B1226 SITE 4 AC4 23 LYS B1247 LEU B1250 ALA B1581 VAL B1582 SITE 5 AC4 23 HOH B1875 HOH B1903 HOH B1940 HOH B1963 SITE 6 AC4 23 HOH B2009 HOH B2153 C49 F 18 SITE 1 AC5 4 CYS B1479 CYS B1481 CYS B1487 HIS B1504 SITE 1 AC6 4 HIS B 796 CYS B 823 CYS B 897 CYS B 900 SITE 1 AC7 13 ARG A1566 PHE A1568 GLY A1569 ARG A1574 SITE 2 AC7 13 HOH A1910 HOH A2182 ARG B1566 PHE B1567 SITE 3 AC7 13 PHE B1568 GLY B1569 ARG B1574 HOH B1840 SITE 4 AC7 13 HOH B2039 CRYST1 89.680 152.042 96.053 90.00 94.54 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011151 0.000000 0.000885 0.00000 SCALE2 0.000000 0.006577 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010444 0.00000