data_4DAC # _entry.id 4DAC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4DAC RCSB RCSB070080 WWPDB D_1000070080 # _pdbx_database_status.entry_id 4DAC _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-01-12 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lanci, C.J.' 1 'MacDermaid, C.M.' 2 'Saven, J.G.' 3 # _citation.id primary _citation.title 'Computational design of a protein crystal.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 109 _citation.page_first 7304 _citation.page_last 7309 _citation.year 2012 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22538812 _citation.pdbx_database_id_DOI 10.1073/pnas.1112595109 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Lanci, C.J.' 1 primary 'Macdermaid, C.M.' 2 primary 'Kang, S.G.' 3 primary 'Acharya, R.' 4 primary 'North, B.' 5 primary 'Yang, X.' 6 primary 'Qiu, X.J.' 7 primary 'Degrado, W.F.' 8 primary 'Saven, J.G.' 9 # _cell.length_a 63.669 _cell.length_b 63.669 _cell.length_c 40.401 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 4DAC _cell.pdbx_unique_axis ? _cell.Z_PDB 24 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 6' _symmetry.entry_id 4DAC _symmetry.Int_Tables_number 168 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Computationally designed crystal forming protein P6d' 3016.514 4 ? ? ? ? 2 water nat water 18.015 48 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ACE)EVYKLDANVKRLEKEVGKLEGEVARL(NH2)' _entity_poly.pdbx_seq_one_letter_code_can XEVYKLDANVKRLEKEVGKLEGEVARLX _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 GLU n 1 3 VAL n 1 4 TYR n 1 5 LYS n 1 6 LEU n 1 7 ASP n 1 8 ALA n 1 9 ASN n 1 10 VAL n 1 11 LYS n 1 12 ARG n 1 13 LEU n 1 14 GLU n 1 15 LYS n 1 16 GLU n 1 17 VAL n 1 18 GLY n 1 19 LYS n 1 20 LEU n 1 21 GLU n 1 22 GLY n 1 23 GLU n 1 24 VAL n 1 25 ALA n 1 26 ARG n 1 27 LEU n 1 28 NH2 n # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4DAC _struct_ref.pdbx_db_accession 4DAC _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code EVYKLDANVKRLEKEVGKLEGEVARL _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4DAC A 1 ? 28 ? 4DAC 0 ? 27 ? 0 27 2 1 4DAC B 1 ? 28 ? 4DAC 0 ? 27 ? 0 27 3 1 4DAC C 1 ? 28 ? 4DAC 0 ? 27 ? 0 27 4 1 4DAC D 1 ? 28 ? 4DAC 0 ? 27 ? 0 27 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4DAC _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.96 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 37.22 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;0.17M ammonium acetate, 0.085 tri-sodium citrate dihydrate, 25.5% v/v PEG 4000, 15% glycerol, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.pdbx_collection_date 2009-02-04 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54178 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.54178 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 4DAC _reflns.d_resolution_high 2.070 _reflns.d_resolution_low 50.000 _reflns.number_obs 5713 _reflns.pdbx_Rmerge_I_obs 0.166 _reflns.pdbx_netI_over_sigmaI 8.700 _reflns.pdbx_chi_squared 1.077 _reflns.pdbx_redundancy 8.400 _reflns.percent_possible_obs 98.600 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.070 2.110 ? ? ? 0.277 ? ? 1.003 8.300 ? 275 96.200 1 1 2.110 2.140 ? ? ? 0.257 ? ? 1.058 8.400 ? 280 96.600 2 1 2.140 2.190 ? ? ? 0.236 ? ? 1.035 8.400 ? 285 100.000 3 1 2.190 2.230 ? ? ? 0.209 ? ? 1.216 8.300 ? 267 96.400 4 1 2.230 2.280 ? ? ? 0.212 ? ? 1.095 8.300 ? 299 98.000 5 1 2.280 2.330 ? ? ? 0.199 ? ? 1.013 8.400 ? 280 100.000 6 1 2.330 2.390 ? ? ? 0.213 ? ? 1.052 8.400 ? 274 96.100 7 1 2.390 2.450 ? ? ? 0.200 ? ? 1.044 8.300 ? 283 100.000 8 1 2.450 2.530 ? ? ? 0.198 ? ? 1.020 8.400 ? 285 96.900 9 1 2.530 2.610 ? ? ? 0.188 ? ? 1.038 8.500 ? 278 100.000 10 1 2.610 2.700 ? ? ? 0.181 ? ? 1.025 8.400 ? 291 98.000 11 1 2.700 2.810 ? ? ? 0.171 ? ? 1.008 8.500 ? 274 100.000 12 1 2.810 2.940 ? ? ? 0.160 ? ? 0.988 8.400 ? 287 98.600 13 1 2.940 3.090 ? ? ? 0.155 ? ? 1.066 8.500 ? 294 100.000 14 1 3.090 3.290 ? ? ? 0.154 ? ? 1.054 8.500 ? 284 99.300 15 1 3.290 3.540 ? ? ? 0.159 ? ? 1.089 8.400 ? 296 99.300 16 1 3.540 3.900 ? ? ? 0.149 ? ? 1.096 8.500 ? 286 99.700 17 1 3.900 4.460 ? ? ? 0.136 ? ? 1.153 8.400 ? 295 99.700 18 1 4.460 5.620 ? ? ? 0.149 ? ? 1.131 8.400 ? 290 99.300 19 1 5.620 50.000 ? ? ? 0.167 ? ? 1.367 7.800 ? 310 98.400 20 1 # _refine.entry_id 4DAC _refine.ls_d_res_high 2.1000 _refine.ls_d_res_low 9.9400 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF 55917.0000 _refine.pdbx_data_cutoff_low_absF 0.0000 _refine.ls_percent_reflns_obs 98.6000 _refine.ls_number_reflns_obs 5426 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'BULK SOLVENT MODEL USED' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work 0.2180 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2740 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 10.2000 _refine.ls_number_reflns_R_free 554 _refine.ls_R_factor_R_free_error 0.0120 _refine.B_iso_mean 18.3255 _refine.solvent_model_param_bsol 83.5616 _refine.solvent_model_param_ksol 0.4500 _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.aniso_B[1][1] 2.8300 _refine.aniso_B[2][2] 2.8300 _refine.aniso_B[3][3] -5.6600 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT MODEL' _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 43.760 _refine.B_iso_min 6.200 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 4DAC _refine_analyze.Luzzati_coordinate_error_obs 0.250 _refine_analyze.Luzzati_sigma_a_obs 0.210 _refine_analyze.Luzzati_d_res_low_obs 5.000 _refine_analyze.Luzzati_coordinate_error_free 0.320 _refine_analyze.Luzzati_sigma_a_free 0.230 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 814 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 48 _refine_hist.number_atoms_total 862 _refine_hist.d_res_high 2.1000 _refine_hist.d_res_low 9.9400 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id c_bond_d ? 0.005 ? ? ? 'X-RAY DIFFRACTION' c_angle_deg ? 0.900 ? ? ? 'X-RAY DIFFRACTION' c_dihedral_angle_d ? 14.600 ? ? ? 'X-RAY DIFFRACTION' c_improper_angle_d ? 0.590 ? ? ? 'X-RAY DIFFRACTION' c_mcbond_it ? 1.000 1.500 ? ? 'X-RAY DIFFRACTION' c_mcangle_it ? 1.500 2.000 ? ? 'X-RAY DIFFRACTION' c_scbond_it ? 2.150 2.000 ? ? 'X-RAY DIFFRACTION' c_scangle_it ? 3.350 2.500 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.1000 _refine_ls_shell.d_res_low 2.2300 _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.percent_reflns_obs 97.2000 _refine_ls_shell.number_reflns_R_work 774 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2530 _refine_ls_shell.R_factor_R_free 0.2700 _refine_ls_shell.percent_reflns_R_free 11.7000 _refine_ls_shell.number_reflns_R_free 103 _refine_ls_shell.R_factor_R_free_error 0.0270 _refine_ls_shell.number_reflns_all 877 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 capping.param water.top 'X-RAY DIFFRACTION' 3 water_rep.param capping.top 'X-RAY DIFFRACTION' 4 ligand.param ligand.top 'X-RAY DIFFRACTION' # _struct.entry_id 4DAC _struct.title 'Crystal Structure of Computationally Designed Protein P6d' _struct.pdbx_descriptor 'Computationally designed crystal forming protein P6d' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4DAC _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' _struct_keywords.text ;alpha-helix, three-helix bundle, coiled-coil protein, de novo design, computational protein design, computationally designed protein, three helix coiled coil, acylated N-terminus, synthetic, DE NOVO PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 2 ? VAL A 24 ? GLU A 1 VAL A 23 1 ? 23 HELX_P HELX_P2 2 GLU B 2 ? ALA B 25 ? GLU B 1 ALA B 24 1 ? 24 HELX_P HELX_P3 3 GLU C 2 ? ALA C 25 ? GLU C 1 ALA C 24 1 ? 24 HELX_P HELX_P4 4 GLU D 2 ? LEU D 27 ? GLU D 1 LEU D 26 1 ? 26 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ACE 1 C ? ? ? 1_555 A GLU 2 N ? ? A ACE 0 A GLU 1 1_555 ? ? ? ? ? ? ? 1.324 ? covale2 covale ? ? A LEU 27 C ? ? ? 1_555 A NH2 28 N ? ? A LEU 26 A NH2 27 1_555 ? ? ? ? ? ? ? 1.326 ? covale3 covale ? ? B ACE 1 C ? ? ? 1_555 B GLU 2 N ? ? B ACE 0 B GLU 1 1_555 ? ? ? ? ? ? ? 1.327 ? covale4 covale ? ? B LEU 27 C ? ? ? 1_555 B NH2 28 N ? ? B LEU 26 B NH2 27 1_555 ? ? ? ? ? ? ? 1.331 ? covale5 covale ? ? C ACE 1 C ? ? ? 1_555 C GLU 2 N ? ? C ACE 0 C GLU 1 1_555 ? ? ? ? ? ? ? 1.331 ? covale6 covale ? ? C LEU 27 C ? ? ? 1_555 C NH2 28 N ? ? C LEU 26 C NH2 27 1_555 ? ? ? ? ? ? ? 1.325 ? covale7 covale ? ? D ACE 1 C ? ? ? 1_555 D GLU 2 N ? ? D ACE 0 D GLU 1 1_555 ? ? ? ? ? ? ? 1.330 ? covale8 covale ? ? D LEU 27 C ? ? ? 1_555 D NH2 28 N ? ? D LEU 26 D NH2 27 1_555 ? ? ? ? ? ? ? 1.325 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 4DAC _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 4DAC _atom_sites.fract_transf_matrix[1][1] 0.015706 _atom_sites.fract_transf_matrix[1][2] 0.009068 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018136 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024752 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 0 0 ACE ACE A . n A 1 2 GLU 2 1 1 GLU GLU A . n A 1 3 VAL 3 2 2 VAL VAL A . n A 1 4 TYR 4 3 3 TYR TYR A . n A 1 5 LYS 5 4 4 LYS LYS A . n A 1 6 LEU 6 5 5 LEU LEU A . n A 1 7 ASP 7 6 6 ASP ASP A . n A 1 8 ALA 8 7 7 ALA ALA A . n A 1 9 ASN 9 8 8 ASN ASN A . n A 1 10 VAL 10 9 9 VAL VAL A . n A 1 11 LYS 11 10 10 LYS LYS A . n A 1 12 ARG 12 11 11 ARG ARG A . n A 1 13 LEU 13 12 12 LEU LEU A . n A 1 14 GLU 14 13 13 GLU GLU A . n A 1 15 LYS 15 14 14 LYS LYS A . n A 1 16 GLU 16 15 15 GLU GLU A . n A 1 17 VAL 17 16 16 VAL VAL A . n A 1 18 GLY 18 17 17 GLY GLY A . n A 1 19 LYS 19 18 18 LYS LYS A . n A 1 20 LEU 20 19 19 LEU LEU A . n A 1 21 GLU 21 20 20 GLU GLU A . n A 1 22 GLY 22 21 21 GLY GLY A . n A 1 23 GLU 23 22 22 GLU GLU A . n A 1 24 VAL 24 23 23 VAL VAL A . n A 1 25 ALA 25 24 24 ALA ALA A . n A 1 26 ARG 26 25 25 ARG ARG A . n A 1 27 LEU 27 26 26 LEU LEU A . n A 1 28 NH2 28 27 27 NH2 NH2 A . n B 1 1 ACE 1 0 0 ACE ACE B . n B 1 2 GLU 2 1 1 GLU GLU B . n B 1 3 VAL 3 2 2 VAL VAL B . n B 1 4 TYR 4 3 3 TYR TYR B . n B 1 5 LYS 5 4 4 LYS LYS B . n B 1 6 LEU 6 5 5 LEU LEU B . n B 1 7 ASP 7 6 6 ASP ASP B . n B 1 8 ALA 8 7 7 ALA ALA B . n B 1 9 ASN 9 8 8 ASN ASN B . n B 1 10 VAL 10 9 9 VAL VAL B . n B 1 11 LYS 11 10 10 LYS LYS B . n B 1 12 ARG 12 11 11 ARG ARG B . n B 1 13 LEU 13 12 12 LEU LEU B . n B 1 14 GLU 14 13 13 GLU GLU B . n B 1 15 LYS 15 14 14 LYS LYS B . n B 1 16 GLU 16 15 15 GLU GLU B . n B 1 17 VAL 17 16 16 VAL VAL B . n B 1 18 GLY 18 17 17 GLY GLY B . n B 1 19 LYS 19 18 18 LYS LYS B . n B 1 20 LEU 20 19 19 LEU LEU B . n B 1 21 GLU 21 20 20 GLU GLU B . n B 1 22 GLY 22 21 21 GLY GLY B . n B 1 23 GLU 23 22 22 GLU GLU B . n B 1 24 VAL 24 23 23 VAL VAL B . n B 1 25 ALA 25 24 24 ALA ALA B . n B 1 26 ARG 26 25 25 ARG ARG B . n B 1 27 LEU 27 26 26 LEU LEU B . n B 1 28 NH2 28 27 27 NH2 NH2 B . n C 1 1 ACE 1 0 0 ACE ACE C . n C 1 2 GLU 2 1 1 GLU GLU C . n C 1 3 VAL 3 2 2 VAL VAL C . n C 1 4 TYR 4 3 3 TYR TYR C . n C 1 5 LYS 5 4 4 LYS LYS C . n C 1 6 LEU 6 5 5 LEU LEU C . n C 1 7 ASP 7 6 6 ASP ASP C . n C 1 8 ALA 8 7 7 ALA ALA C . n C 1 9 ASN 9 8 8 ASN ASN C . n C 1 10 VAL 10 9 9 VAL VAL C . n C 1 11 LYS 11 10 10 LYS LYS C . n C 1 12 ARG 12 11 11 ARG ARG C . n C 1 13 LEU 13 12 12 LEU LEU C . n C 1 14 GLU 14 13 13 GLU GLU C . n C 1 15 LYS 15 14 14 LYS LYS C . n C 1 16 GLU 16 15 15 GLU GLU C . n C 1 17 VAL 17 16 16 VAL VAL C . n C 1 18 GLY 18 17 17 GLY GLY C . n C 1 19 LYS 19 18 18 LYS LYS C . n C 1 20 LEU 20 19 19 LEU LEU C . n C 1 21 GLU 21 20 20 GLU GLU C . n C 1 22 GLY 22 21 21 GLY GLY C . n C 1 23 GLU 23 22 22 GLU GLU C . n C 1 24 VAL 24 23 23 VAL VAL C . n C 1 25 ALA 25 24 24 ALA ALA C . n C 1 26 ARG 26 25 25 ARG ARG C . n C 1 27 LEU 27 26 26 LEU LEU C . n C 1 28 NH2 28 27 27 NH2 NH2 C . n D 1 1 ACE 1 0 0 ACE ACE D . n D 1 2 GLU 2 1 1 GLU GLU D . n D 1 3 VAL 3 2 2 VAL VAL D . n D 1 4 TYR 4 3 3 TYR TYR D . n D 1 5 LYS 5 4 4 LYS LYS D . n D 1 6 LEU 6 5 5 LEU LEU D . n D 1 7 ASP 7 6 6 ASP ASP D . n D 1 8 ALA 8 7 7 ALA ALA D . n D 1 9 ASN 9 8 8 ASN ASN D . n D 1 10 VAL 10 9 9 VAL VAL D . n D 1 11 LYS 11 10 10 LYS LYS D . n D 1 12 ARG 12 11 11 ARG ARG D . n D 1 13 LEU 13 12 12 LEU LEU D . n D 1 14 GLU 14 13 13 GLU GLU D . n D 1 15 LYS 15 14 14 LYS LYS D . n D 1 16 GLU 16 15 15 GLU GLU D . n D 1 17 VAL 17 16 16 VAL VAL D . n D 1 18 GLY 18 17 17 GLY GLY D . n D 1 19 LYS 19 18 18 LYS LYS D . n D 1 20 LEU 20 19 19 LEU LEU D . n D 1 21 GLU 21 20 20 GLU GLU D . n D 1 22 GLY 22 21 21 GLY GLY D . n D 1 23 GLU 23 22 22 GLU GLU D . n D 1 24 VAL 24 23 23 VAL VAL D . n D 1 25 ALA 25 24 24 ALA ALA D . n D 1 26 ARG 26 25 25 ARG ARG D . n D 1 27 LEU 27 26 26 LEU LEU D . n D 1 28 NH2 28 27 27 NH2 NH2 D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HOH 1 101 9 HOH HOH A . E 2 HOH 2 102 15 HOH HOH A . E 2 HOH 3 103 22 HOH HOH A . E 2 HOH 4 104 24 HOH HOH A . E 2 HOH 5 105 25 HOH HOH A . E 2 HOH 6 106 28 HOH HOH A . E 2 HOH 7 107 31 HOH HOH A . E 2 HOH 8 108 39 HOH HOH A . E 2 HOH 9 109 40 HOH HOH A . F 2 HOH 1 101 27 HOH HOH B . F 2 HOH 2 102 29 HOH HOH B . F 2 HOH 3 103 30 HOH HOH B . F 2 HOH 4 104 32 HOH HOH B . F 2 HOH 5 105 33 HOH HOH B . F 2 HOH 6 106 34 HOH HOH B . F 2 HOH 7 107 41 HOH HOH B . F 2 HOH 8 108 42 HOH HOH B . F 2 HOH 9 109 43 HOH HOH B . F 2 HOH 10 110 44 HOH HOH B . F 2 HOH 11 111 46 HOH HOH B . G 2 HOH 1 101 1 HOH HOH C . G 2 HOH 2 102 2 HOH HOH C . G 2 HOH 3 103 8 HOH HOH C . G 2 HOH 4 104 10 HOH HOH C . G 2 HOH 5 105 11 HOH HOH C . G 2 HOH 6 106 12 HOH HOH C . G 2 HOH 7 107 13 HOH HOH C . G 2 HOH 8 108 14 HOH HOH C . G 2 HOH 9 109 20 HOH HOH C . G 2 HOH 10 110 21 HOH HOH C . G 2 HOH 11 111 23 HOH HOH C . G 2 HOH 12 112 26 HOH HOH C . G 2 HOH 13 113 35 HOH HOH C . G 2 HOH 14 114 36 HOH HOH C . G 2 HOH 15 115 38 HOH HOH C . G 2 HOH 16 116 45 HOH HOH C . G 2 HOH 17 117 47 HOH HOH C . G 2 HOH 18 118 48 HOH HOH C . H 2 HOH 1 101 3 HOH HOH D . H 2 HOH 2 102 4 HOH HOH D . H 2 HOH 3 103 5 HOH HOH D . H 2 HOH 4 104 6 HOH HOH D . H 2 HOH 5 105 7 HOH HOH D . H 2 HOH 6 106 16 HOH HOH D . H 2 HOH 7 107 17 HOH HOH D . H 2 HOH 8 108 18 HOH HOH D . H 2 HOH 9 109 19 HOH HOH D . H 2 HOH 10 110 37 HOH HOH D . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 3 author_defined_assembly ? monomeric 1 4 author_defined_assembly ? monomeric 1 5 software_defined_assembly PISA trimeric 3 6 software_defined_assembly PISA trimeric 3 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,E 2 1 B,F 3 1 C,G 4 1 D,H 5 1 A,B,C,E,F,G 6 1,2,3 D,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 5 'ABSA (A^2)' 3270 ? 5 MORE -28 ? 5 'SSA (A^2)' 5740 ? 6 'ABSA (A^2)' 3130 ? 6 MORE -28 ? 6 'SSA (A^2)' 6190 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5000000000 -0.8660254038 0.0000000000 -31.8345000000 0.8660254038 -0.5000000000 0.0000000000 55.1389714336 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5000000000 0.8660254038 0.0000000000 -63.6690000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-05-02 2 'Structure model' 1 1 2012-06-13 3 'Structure model' 1 2 2017-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.contact_author' 3 3 'Structure model' '_software.contact_author_email' 4 3 'Structure model' '_software.date' 5 3 'Structure model' '_software.language' 6 3 'Structure model' '_software.location' 7 3 'Structure model' '_software.name' 8 3 'Structure model' '_software.type' 9 3 'Structure model' '_software.version' # _pdbx_phasing_MR.entry_id 4DAC _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor 60.320 _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.500 _pdbx_phasing_MR.d_res_low_rotation 27.570 _pdbx_phasing_MR.d_res_high_translation 2.500 _pdbx_phasing_MR.d_res_low_translation 27.570 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHASER 2.1.4 'Thu Nov 13 11:40:59 2008' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 CNS 1.2 ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns-online.org/ Fortran_77 ? 5 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 7 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 11 ? CG ? A ARG 12 CG 2 1 Y 1 A ARG 11 ? CD ? A ARG 12 CD 3 1 Y 1 A ARG 11 ? NE ? A ARG 12 NE 4 1 Y 1 A ARG 11 ? CZ ? A ARG 12 CZ 5 1 Y 1 A ARG 11 ? NH1 ? A ARG 12 NH1 6 1 Y 1 A ARG 11 ? NH2 ? A ARG 12 NH2 7 1 Y 1 A ARG 25 ? CG ? A ARG 26 CG 8 1 Y 1 A ARG 25 ? CD ? A ARG 26 CD 9 1 Y 1 A ARG 25 ? NE ? A ARG 26 NE 10 1 Y 1 A ARG 25 ? CZ ? A ARG 26 CZ 11 1 Y 1 A ARG 25 ? NH1 ? A ARG 26 NH1 12 1 Y 1 A ARG 25 ? NH2 ? A ARG 26 NH2 13 1 Y 1 B LYS 4 ? CG ? B LYS 5 CG 14 1 Y 1 B LYS 4 ? CD ? B LYS 5 CD 15 1 Y 1 B LYS 4 ? CE ? B LYS 5 CE 16 1 Y 1 B LYS 4 ? NZ ? B LYS 5 NZ 17 1 Y 1 B ARG 11 ? CG ? B ARG 12 CG 18 1 Y 1 B ARG 11 ? CD ? B ARG 12 CD 19 1 Y 1 B ARG 11 ? NE ? B ARG 12 NE 20 1 Y 1 B ARG 11 ? CZ ? B ARG 12 CZ 21 1 Y 1 B ARG 11 ? NH1 ? B ARG 12 NH1 22 1 Y 1 B ARG 11 ? NH2 ? B ARG 12 NH2 23 1 Y 1 C GLU 1 ? CG ? C GLU 2 CG 24 1 Y 1 C GLU 1 ? CD ? C GLU 2 CD 25 1 Y 1 C GLU 1 ? OE1 ? C GLU 2 OE1 26 1 Y 1 C GLU 1 ? OE2 ? C GLU 2 OE2 27 1 Y 1 C ARG 11 ? CG ? C ARG 12 CG 28 1 Y 1 C ARG 11 ? CD ? C ARG 12 CD 29 1 Y 1 C ARG 11 ? NE ? C ARG 12 NE 30 1 Y 1 C ARG 11 ? CZ ? C ARG 12 CZ 31 1 Y 1 C ARG 11 ? NH1 ? C ARG 12 NH1 32 1 Y 1 C ARG 11 ? NH2 ? C ARG 12 NH2 33 1 Y 1 D ARG 11 ? CG ? D ARG 12 CG 34 1 Y 1 D ARG 11 ? CD ? D ARG 12 CD 35 1 Y 1 D ARG 11 ? NE ? D ARG 12 NE 36 1 Y 1 D ARG 11 ? CZ ? D ARG 12 CZ 37 1 Y 1 D ARG 11 ? NH1 ? D ARG 12 NH1 38 1 Y 1 D ARG 11 ? NH2 ? D ARG 12 NH2 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #