HEADER RNA-BINDING PROTEIN/DNA,RNA 13-JAN-12 4DB4 TITLE MSS116P DEAD-BOX HELICASE DOMAIN 2 BOUND TO A CHIMAERIC RNA-DNA DUPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT RNA HELICASE MSS116, MITOCHONDRIAL; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DOMAIN 2 (UNP RESIDUES 342-596); COMPND 5 SYNONYM: MSS116P; COMPND 6 EC: 3.6.4.13; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 5'-R(*GP*GP*GP*CP*GP*GP*G)-D(P*CP*CP*CP*GP*CP*CP*C)-3'; COMPND 10 CHAIN: C, D, E, F; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 ORGANELLE: MITOCHONDRION; SOURCE 6 GENE: MSS116, YDR194C, YD9346.05C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 ROSETTA 2; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMAL-C2T; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES KEYWDS DEAD-BOX, RNA HELICASE, HYDROLASE, RNA-BINDING PROTEIN-DNA, RNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.L.MALLAM,M.DEL CAMPO,B.D.GILMAN,D.J.SIDOTE,A.LAMBOWITZ REVDAT 4 13-SEP-23 4DB4 1 SEQADV REVDAT 3 10-OCT-12 4DB4 1 JRNL REMARK REVDAT 2 19-SEP-12 4DB4 1 JRNL REVDAT 1 29-AUG-12 4DB4 0 JRNL AUTH A.L.MALLAM,M.DEL CAMPO,B.GILMAN,D.J.SIDOTE,A.M.LAMBOWITZ JRNL TITL STRUCTURAL BASIS FOR RNA-DUPLEX RECOGNITION AND UNWINDING BY JRNL TITL 2 THE DEAD-BOX HELICASE MSS116P. JRNL REF NATURE V. 490 121 2012 JRNL REFN ISSN 0028-0836 JRNL PMID 22940866 JRNL DOI 10.1038/NATURE11402 REMARK 2 REMARK 2 RESOLUTION. 3.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 3 NUMBER OF REFLECTIONS : 8213 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.248 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.080 REMARK 3 FREE R VALUE TEST SET COUNT : 828 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.8209 - 6.5339 0.80 1766 205 0.2113 0.2318 REMARK 3 2 6.5339 - 5.1891 0.56 1256 138 0.2767 0.3240 REMARK 3 3 5.1891 - 4.5340 0.55 1209 135 0.2292 0.2668 REMARK 3 4 4.5340 - 4.1198 0.53 1171 130 0.2442 0.2780 REMARK 3 5 4.1198 - 3.8247 0.49 1101 122 0.2854 0.3639 REMARK 3 6 3.8247 - 3.5990 0.40 882 98 0.3179 0.3484 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.27 REMARK 3 B_SOL : 14.05 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.86630 REMARK 3 B22 (A**2) : 6.76550 REMARK 3 B33 (A**2) : 1.10090 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4975 REMARK 3 ANGLE : 0.963 7051 REMARK 3 CHIRALITY : 0.054 875 REMARK 3 PLANARITY : 0.005 715 REMARK 3 DIHEDRAL : 12.761 1802 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 3 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN 'A' AND (RESSEQ 341:596 ) AND (NOT REMARK 3 ELEMENT H) REMARK 3 SELECTION : CHAIN 'B' AND (RESSEQ 341:596 ) AND (NOT REMARK 3 ELEMENT H) REMARK 3 ATOM PAIRS NUMBER : 1757 REMARK 3 RMSD : 0.024 REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN 'C' AND (RESSEQ -1:6 ) AND (NOT REMARK 3 ELEMENT H) REMARK 3 SELECTION : CHAIN 'D' AND (RESSEQ 13:20 ) AND (NOT REMARK 3 ELEMENT H) REMARK 3 ATOM PAIRS NUMBER : 159 REMARK 3 RMSD : 0.018 REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: CHAIN 'C' AND (RESSEQ -1:6 ) AND (NOT REMARK 3 ELEMENT H) REMARK 3 SELECTION : CHAIN 'E' AND (RESSEQ 13:20 ) AND (NOT REMARK 3 ELEMENT H) REMARK 3 ATOM PAIRS NUMBER : 159 REMARK 3 RMSD : 0.045 REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: CHAIN 'C' AND (RESSEQ -1:6 ) AND (NOT REMARK 3 ELEMENT H) REMARK 3 SELECTION : CHAIN 'F' AND (RESSEQ -1:6 ) AND (NOT REMARK 3 ELEMENT H) REMARK 3 ATOM PAIRS NUMBER : 159 REMARK 3 RMSD : 0.054 REMARK 3 NCS GROUP : 3 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN 'C' AND (RESSEQ -6:-2 ) AND (NOT REMARK 3 ELEMENT H) REMARK 3 SELECTION : CHAIN 'D' AND (RESSEQ 8:12 ) AND (NOT REMARK 3 ELEMENT H) REMARK 3 ATOM PAIRS NUMBER : 112 REMARK 3 RMSD : 0.031 REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: CHAIN 'C' AND (RESSEQ -6:-2 ) AND (NOT REMARK 3 ELEMENT H) REMARK 3 SELECTION : CHAIN 'E' AND (RESSEQ 8:12 ) AND (NOT REMARK 3 ELEMENT H) REMARK 3 ATOM PAIRS NUMBER : 112 REMARK 3 RMSD : 0.046 REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: CHAIN 'C' AND (RESSEQ -6:-2 ) AND (NOT REMARK 3 ELEMENT H) REMARK 3 SELECTION : CHAIN 'F' AND (RESSEQ -6:-2 ) AND (NOT REMARK 3 ELEMENT H) REMARK 3 ATOM PAIRS NUMBER : 111 REMARK 3 RMSD : 0.071 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DB4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000070108. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00003 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL SI(111), LIQUID REMARK 200 N2 COOLED REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8213 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.599 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.12900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.65700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: PDB ENTRY 3I5X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6% TACSIMATE, PH 5.0, 20% PEG3350, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.84800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.33050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.05600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 107.33050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.84800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.05600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, E, F REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -70.11200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 350 CG CD OE1 OE2 REMARK 470 LYS A 351 CG CD CE NZ REMARK 470 LYS A 364 CG CD CE NZ REMARK 470 LYS A 365 CG CD CE NZ REMARK 470 ILE A 367 CG1 CG2 CD1 REMARK 470 LYS A 368 CG CD CE NZ REMARK 470 LYS A 375 CG CD CE NZ REMARK 470 LYS A 384 CG CD CE NZ REMARK 470 LYS A 394 CG CD CE NZ REMARK 470 LYS A 398 CG CD CE NZ REMARK 470 LYS A 399 CG CD CE NZ REMARK 470 LEU A 401 CG CD1 CD2 REMARK 470 LYS A 409 CG CD CE NZ REMARK 470 GLN A 412 CG CD OE1 NE2 REMARK 470 ASN A 413 CG OD1 ND2 REMARK 470 LYS A 414 CG CD CE NZ REMARK 470 LEU A 418 CG CD1 CD2 REMARK 470 LYS A 420 CG CD CE NZ REMARK 470 ARG A 421 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 423 CG CD CE NZ REMARK 470 LYS A 424 CG CD CE NZ REMARK 470 GLU A 426 CG CD OE1 OE2 REMARK 470 ARG A 438 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 444 CG OD1 ND2 REMARK 470 GLU A 456 CG CD OE1 OE2 REMARK 470 LYS A 472 CG CD CE NZ REMARK 470 GLU A 473 CG CD OE1 OE2 REMARK 470 LYS A 482 CG CD CE NZ REMARK 470 ARG A 489 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 492 CG CD OE1 OE2 REMARK 470 ASP A 493 CG OD1 OD2 REMARK 470 LYS A 495 CG CD CE NZ REMARK 470 ASN A 496 CG OD1 ND2 REMARK 470 ILE A 499 CG1 CG2 CD1 REMARK 470 LYS A 501 CG CD CE NZ REMARK 470 LYS A 504 CG CD CE NZ REMARK 470 GLU A 506 CG CD OE1 OE2 REMARK 470 LYS A 512 CG CD CE NZ REMARK 470 GLU A 522 CG CD OE1 OE2 REMARK 470 ILE A 541 CG1 CG2 CD1 REMARK 470 LYS A 542 CG CD CE NZ REMARK 470 GLU A 543 CG CD OE1 OE2 REMARK 470 ARG A 545 CG CD NE CZ NH1 NH2 REMARK 470 SER A 547 OG REMARK 470 ARG A 549 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 550 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 567 CG CD OE1 NE2 REMARK 470 LYS A 569 CG CD CE NZ REMARK 470 ARG A 574 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 575 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 577 CG CD1 CD2 REMARK 470 ASP A 578 CG OD1 OD2 REMARK 470 LYS A 579 CG CD CE NZ REMARK 470 SER A 583 OG REMARK 470 ARG A 584 CG CD NE CZ NH1 NH2 REMARK 470 PRO A 586 CG CD REMARK 470 LYS A 589 CG CD CE NZ REMARK 470 ARG A 595 NE CZ NH1 NH2 REMARK 470 GLU B 350 CG CD OE1 OE2 REMARK 470 LYS B 351 CG CD CE NZ REMARK 470 LYS B 364 CG CD CE NZ REMARK 470 LYS B 365 CG CD CE NZ REMARK 470 LYS B 368 CG CD CE NZ REMARK 470 GLU B 369 CG CD OE1 OE2 REMARK 470 ARG B 370 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 384 CG CD CE NZ REMARK 470 LYS B 394 CG CD CE NZ REMARK 470 LYS B 398 CG CD CE NZ REMARK 470 LYS B 399 CG CD CE NZ REMARK 470 LEU B 404 CG CD1 CD2 REMARK 470 GLU B 405 CG CD OE1 OE2 REMARK 470 LYS B 409 CG CD CE NZ REMARK 470 GLN B 412 CG CD OE1 NE2 REMARK 470 LYS B 414 CG CD CE NZ REMARK 470 LEU B 418 CG CD1 CD2 REMARK 470 LYS B 420 CG CD CE NZ REMARK 470 ARG B 421 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 423 CG CD CE NZ REMARK 470 LYS B 424 CG CD CE NZ REMARK 470 GLU B 426 CG CD OE1 OE2 REMARK 470 ARG B 438 CG CD NE CZ NH1 NH2 REMARK 470 MET B 440 CG SD CE REMARK 470 ASP B 441 CG OD1 OD2 REMARK 470 ASN B 444 CG OD1 ND2 REMARK 470 GLU B 456 CG CD OE1 OE2 REMARK 470 LEU B 457 CG CD1 CD2 REMARK 470 ARG B 469 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 472 CG CD CE NZ REMARK 470 GLU B 473 CG CD OE1 OE2 REMARK 470 LYS B 482 CG CD CE NZ REMARK 470 ARG B 489 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 492 CG CD OE1 OE2 REMARK 470 ASP B 493 CG OD1 OD2 REMARK 470 LYS B 495 CG CD CE NZ REMARK 470 VAL B 498 CG1 CG2 REMARK 470 LYS B 501 CG CD CE NZ REMARK 470 LYS B 504 CG CD CE NZ REMARK 470 GLU B 506 CG CD OE1 OE2 REMARK 470 LYS B 512 CG CD CE NZ REMARK 470 SER B 513 OG REMARK 470 GLU B 514 CG CD OE1 OE2 REMARK 470 GLU B 521 CG CD OE1 OE2 REMARK 470 GLU B 522 CG CD OE1 OE2 REMARK 470 GLU B 524 CG CD OE1 OE2 REMARK 470 ASP B 528 CG OD1 OD2 REMARK 470 ARG B 538 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 542 CE NZ REMARK 470 ARG B 545 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 549 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 550 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 567 CG CD OE1 NE2 REMARK 470 LYS B 569 CG CD CE NZ REMARK 470 ARG B 574 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 575 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 578 CG OD1 OD2 REMARK 470 LYS B 579 CG CD CE NZ REMARK 470 ARG B 584 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 589 CG CD CE NZ REMARK 470 GLU B 593 CG CD OE1 OE2 REMARK 470 ARG B 595 NE CZ NH1 NH2 REMARK 470 C F -4 OP1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C 4 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DC D 18 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 434 0.83 -64.73 REMARK 500 ALA A 437 -37.01 66.13 REMARK 500 PRO A 586 -174.62 -66.70 REMARK 500 ILE A 587 -46.51 76.06 REMARK 500 ASP B 434 1.89 -65.89 REMARK 500 ALA B 437 -40.31 69.23 REMARK 500 PRO B 586 -172.85 -69.68 REMARK 500 ILE B 587 -50.45 74.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DAX RELATED DB: PDB REMARK 900 RELATED ID: 4DAZ RELATED DB: PDB REMARK 900 RELATED ID: 4DB2 RELATED DB: PDB DBREF 4DB4 A 342 596 UNP P15424 MS116_YEAST 342 596 DBREF 4DB4 B 342 596 UNP P15424 MS116_YEAST 342 596 DBREF 4DB4 C -7 6 PDB 4DB4 4DB4 -7 6 DBREF 4DB4 D 7 20 PDB 4DB4 4DB4 7 20 DBREF 4DB4 E 7 20 PDB 4DB4 4DB4 7 20 DBREF 4DB4 F -7 6 PDB 4DB4 4DB4 -7 6 SEQADV 4DB4 SER A 341 UNP P15424 EXPRESSION TAG SEQADV 4DB4 SER B 341 UNP P15424 EXPRESSION TAG SEQRES 1 A 256 SER ILE ASP GLN SER VAL VAL ILE SER GLU LYS PHE ALA SEQRES 2 A 256 ASN SER ILE PHE ALA ALA VAL GLU HIS ILE LYS LYS GLN SEQRES 3 A 256 ILE LYS GLU ARG ASP SER ASN TYR LYS ALA ILE ILE PHE SEQRES 4 A 256 ALA PRO THR VAL LYS PHE THR SER PHE LEU CYS SER ILE SEQRES 5 A 256 LEU LYS ASN GLU PHE LYS LYS ASP LEU PRO ILE LEU GLU SEQRES 6 A 256 PHE HIS GLY LYS ILE THR GLN ASN LYS ARG THR SER LEU SEQRES 7 A 256 VAL LYS ARG PHE LYS LYS ASP GLU SER GLY ILE LEU VAL SEQRES 8 A 256 CYS THR ASP VAL GLY ALA ARG GLY MET ASP PHE PRO ASN SEQRES 9 A 256 VAL HIS GLU VAL LEU GLN ILE GLY VAL PRO SER GLU LEU SEQRES 10 A 256 ALA ASN TYR ILE HIS ARG ILE GLY ARG THR ALA ARG SER SEQRES 11 A 256 GLY LYS GLU GLY SER SER VAL LEU PHE ILE CYS LYS ASP SEQRES 12 A 256 GLU LEU PRO PHE VAL ARG GLU LEU GLU ASP ALA LYS ASN SEQRES 13 A 256 ILE VAL ILE ALA LYS GLN GLU LYS TYR GLU PRO SER GLU SEQRES 14 A 256 GLU ILE LYS SER GLU VAL LEU GLU ALA VAL THR GLU GLU SEQRES 15 A 256 PRO GLU ASP ILE SER ASP ILE VAL ILE SER LEU ILE SER SEQRES 16 A 256 SER TYR ARG SER CYS ILE LYS GLU TYR ARG PHE SER GLU SEQRES 17 A 256 ARG ARG ILE LEU PRO GLU ILE ALA SER THR TYR GLY VAL SEQRES 18 A 256 LEU LEU ASN ASP PRO GLN LEU LYS ILE PRO VAL SER ARG SEQRES 19 A 256 ARG PHE LEU ASP LYS LEU GLY LEU SER ARG SER PRO ILE SEQRES 20 A 256 GLY LYS ALA MET PHE GLU ILE ARG ASP SEQRES 1 B 256 SER ILE ASP GLN SER VAL VAL ILE SER GLU LYS PHE ALA SEQRES 2 B 256 ASN SER ILE PHE ALA ALA VAL GLU HIS ILE LYS LYS GLN SEQRES 3 B 256 ILE LYS GLU ARG ASP SER ASN TYR LYS ALA ILE ILE PHE SEQRES 4 B 256 ALA PRO THR VAL LYS PHE THR SER PHE LEU CYS SER ILE SEQRES 5 B 256 LEU LYS ASN GLU PHE LYS LYS ASP LEU PRO ILE LEU GLU SEQRES 6 B 256 PHE HIS GLY LYS ILE THR GLN ASN LYS ARG THR SER LEU SEQRES 7 B 256 VAL LYS ARG PHE LYS LYS ASP GLU SER GLY ILE LEU VAL SEQRES 8 B 256 CYS THR ASP VAL GLY ALA ARG GLY MET ASP PHE PRO ASN SEQRES 9 B 256 VAL HIS GLU VAL LEU GLN ILE GLY VAL PRO SER GLU LEU SEQRES 10 B 256 ALA ASN TYR ILE HIS ARG ILE GLY ARG THR ALA ARG SER SEQRES 11 B 256 GLY LYS GLU GLY SER SER VAL LEU PHE ILE CYS LYS ASP SEQRES 12 B 256 GLU LEU PRO PHE VAL ARG GLU LEU GLU ASP ALA LYS ASN SEQRES 13 B 256 ILE VAL ILE ALA LYS GLN GLU LYS TYR GLU PRO SER GLU SEQRES 14 B 256 GLU ILE LYS SER GLU VAL LEU GLU ALA VAL THR GLU GLU SEQRES 15 B 256 PRO GLU ASP ILE SER ASP ILE VAL ILE SER LEU ILE SER SEQRES 16 B 256 SER TYR ARG SER CYS ILE LYS GLU TYR ARG PHE SER GLU SEQRES 17 B 256 ARG ARG ILE LEU PRO GLU ILE ALA SER THR TYR GLY VAL SEQRES 18 B 256 LEU LEU ASN ASP PRO GLN LEU LYS ILE PRO VAL SER ARG SEQRES 19 B 256 ARG PHE LEU ASP LYS LEU GLY LEU SER ARG SER PRO ILE SEQRES 20 B 256 GLY LYS ALA MET PHE GLU ILE ARG ASP SEQRES 1 C 14 G G G C G G G DC DC DC DG DC DC SEQRES 2 C 14 DC SEQRES 1 D 14 G G G C G G G DC DC DC DG DC DC SEQRES 2 D 14 DC SEQRES 1 E 14 G G G C G G G DC DC DC DG DC DC SEQRES 2 E 14 DC SEQRES 1 F 14 G G G C G G G DC DC DC DG DC DC SEQRES 2 F 14 DC HELIX 1 1 ALA A 353 ARG A 370 1 18 HELIX 2 2 THR A 382 LYS A 398 1 17 HELIX 3 3 THR A 411 ASP A 425 1 15 HELIX 4 4 LEU A 457 GLY A 465 1 9 HELIX 5 5 LEU A 485 ASN A 496 1 12 HELIX 6 6 SER A 508 VAL A 519 1 12 HELIX 7 7 GLU A 522 SER A 539 1 18 HELIX 8 8 CYS A 540 ARG A 545 1 6 HELIX 9 9 SER A 547 SER A 557 1 11 HELIX 10 10 SER A 557 LEU A 563 1 7 HELIX 11 11 SER A 573 GLY A 581 1 9 HELIX 12 12 ILE A 587 MET A 591 1 5 HELIX 13 13 ALA B 353 ARG B 370 1 18 HELIX 14 14 THR B 382 LYS B 398 1 17 HELIX 15 15 THR B 411 ASP B 425 1 15 HELIX 16 16 LEU B 457 GLY B 465 1 9 HELIX 17 17 LEU B 485 ASN B 496 1 12 HELIX 18 18 SER B 508 VAL B 519 1 12 HELIX 19 19 GLU B 522 SER B 539 1 18 HELIX 20 20 CYS B 540 ARG B 545 1 6 HELIX 21 21 SER B 547 SER B 557 1 11 HELIX 22 22 SER B 557 LEU B 563 1 7 HELIX 23 23 SER B 573 GLY B 581 1 9 HELIX 24 24 ILE B 587 MET B 591 1 5 SHEET 1 A 7 ILE A 403 PHE A 406 0 SHEET 2 A 7 GLY A 428 CYS A 432 1 O VAL A 431 N LEU A 404 SHEET 3 A 7 LYS A 375 PHE A 379 1 N ILE A 378 O LEU A 430 SHEET 4 A 7 GLU A 447 ILE A 451 1 O LEU A 449 N ILE A 377 SHEET 5 A 7 SER A 475 CYS A 481 1 O PHE A 479 N GLN A 450 SHEET 6 A 7 ASP A 343 SER A 349 1 N SER A 349 O ILE A 480 SHEET 7 A 7 LYS A 501 TYR A 505 1 O LYS A 501 N VAL A 346 SHEET 1 B 2 ILE A 570 VAL A 572 0 SHEET 2 B 2 PHE A 592 ILE A 594 1 O GLU A 593 N ILE A 570 SHEET 1 C 7 ILE B 403 PHE B 406 0 SHEET 2 C 7 GLY B 428 CYS B 432 1 O VAL B 431 N LEU B 404 SHEET 3 C 7 LYS B 375 PHE B 379 1 N ILE B 378 O LEU B 430 SHEET 4 C 7 GLU B 447 ILE B 451 1 O LEU B 449 N ILE B 377 SHEET 5 C 7 SER B 475 CYS B 481 1 O PHE B 479 N GLN B 450 SHEET 6 C 7 ASP B 343 SER B 349 1 N SER B 349 O ILE B 480 SHEET 7 C 7 LYS B 501 TYR B 505 1 O GLU B 503 N ILE B 348 SHEET 1 D 2 ILE B 570 VAL B 572 0 SHEET 2 D 2 PHE B 592 ILE B 594 1 O GLU B 593 N ILE B 570 CRYST1 43.696 70.112 214.661 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022885 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014263 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004659 0.00000