HEADER HYDROLASE/HYDROLASE INHIBITOR 17-JAN-12 4DCD TITLE 1.6A RESOLUTION STRUCTURE OF POLIOVIRUS 3C PROTEASE CONTAINING A TITLE 2 COVALENTLY BOUND DIPEPTIDYL INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENOME POLYPROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1566-1748; COMPND 5 SYNONYM: PROTEASE 3C; COMPND 6 EC: 3.4.22.28; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN POLIOVIRUS 1; SOURCE 3 ORGANISM_TAXID: 12081; SOURCE 4 STRAIN: MAHONEY; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS PROTEASE, POLIOVIRUS, ANTIVIRAL INHIBITORS, DIPEPTIDYL INHIBITOR, KEYWDS 2 HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.LOVELL,K.P.BATTAILE,Y.KIM,K.-C.TIEW,S.R.MANDADAPU,K.R.ALLISTON, AUTHOR 2 W.C.GROUTAS,K.O.CHANG REVDAT 6 30-OCT-24 4DCD 1 REMARK REVDAT 5 13-SEP-23 4DCD 1 REMARK REVDAT 4 20-MAY-20 4DCD 1 SEQADV HETSYN LINK REVDAT 3 15-NOV-17 4DCD 1 REMARK REVDAT 2 14-NOV-12 4DCD 1 JRNL REVDAT 1 05-SEP-12 4DCD 0 JRNL AUTH Y.KIM,S.LOVELL,K.C.TIEW,S.R.MANDADAPU,K.R.ALLISTON, JRNL AUTH 2 K.P.BATTAILE,W.C.GROUTAS,K.O.CHANG JRNL TITL BROAD-SPECTRUM ANTIVIRALS AGAINST 3C OR 3C-LIKE PROTEASES OF JRNL TITL 2 PICORNAVIRUSES, NOROVIRUSES, AND CORONAVIRUSES. JRNL REF J.VIROL. V. 86 11754 2012 JRNL REFN ISSN 0022-538X JRNL PMID 22915796 JRNL DOI 10.1128/JVI.01348-12 REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_892 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.200 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 23726 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 2228 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.5326 - 4.0306 0.95 2582 131 0.1573 0.1671 REMARK 3 2 4.0306 - 3.1996 0.95 2564 128 0.1508 0.1752 REMARK 3 3 3.1996 - 2.7953 0.91 2432 140 0.1617 0.1776 REMARK 3 4 2.7953 - 2.5397 0.96 2590 139 0.1557 0.1864 REMARK 3 5 2.5397 - 2.3577 0.98 2648 137 0.1426 0.1389 REMARK 3 6 2.3577 - 2.2187 0.95 2514 163 0.1429 0.1546 REMARK 3 7 2.2187 - 2.1076 0.94 2520 154 0.1509 0.1755 REMARK 3 8 2.1076 - 2.0159 0.96 2558 140 0.1509 0.1988 REMARK 3 9 2.0159 - 1.9383 0.98 2638 148 0.1582 0.2262 REMARK 3 10 1.9383 - 1.8714 0.98 2626 145 0.1807 0.2216 REMARK 3 11 1.8714 - 1.8129 0.98 2672 125 0.1918 0.2458 REMARK 3 12 1.8129 - 1.7610 0.95 2572 127 0.2041 0.2337 REMARK 3 13 1.7610 - 1.7147 0.97 2656 124 0.2350 0.2495 REMARK 3 14 1.7147 - 1.6728 0.95 2544 145 0.2705 0.2977 REMARK 3 15 1.6728 - 1.6348 0.98 2636 140 0.2709 0.2896 REMARK 3 16 1.6348 - 1.6000 0.98 2592 142 0.2820 0.3131 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 40.30 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.84400 REMARK 3 B22 (A**2) : -3.01550 REMARK 3 B33 (A**2) : 6.85950 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1455 REMARK 3 ANGLE : 1.308 1977 REMARK 3 CHIRALITY : 0.109 228 REMARK 3 PLANARITY : 0.006 255 REMARK 3 DIHEDRAL : 17.402 519 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ -3:77) REMARK 3 ORIGIN FOR THE GROUP (A): 13.8207 11.9621 13.5170 REMARK 3 T TENSOR REMARK 3 T11: 0.1239 T22: 0.1291 REMARK 3 T33: 0.1378 T12: -0.0228 REMARK 3 T13: 0.0020 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 1.3495 L22: 1.4959 REMARK 3 L33: 0.9644 L12: 0.1984 REMARK 3 L13: 0.2282 L23: 0.4007 REMARK 3 S TENSOR REMARK 3 S11: 0.0143 S12: -0.0109 S13: 0.1057 REMARK 3 S21: -0.0008 S22: 0.0222 S23: -0.2397 REMARK 3 S31: -0.0598 S32: 0.1501 S33: -0.0434 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 78:89) REMARK 3 ORIGIN FOR THE GROUP (A): 13.9623 16.0406 3.2898 REMARK 3 T TENSOR REMARK 3 T11: 0.2079 T22: 0.2138 REMARK 3 T33: 0.1682 T12: -0.0635 REMARK 3 T13: 0.0469 T23: 0.0503 REMARK 3 L TENSOR REMARK 3 L11: 2.5102 L22: 3.5113 REMARK 3 L33: 1.6887 L12: -1.3648 REMARK 3 L13: 0.8051 L23: 0.4745 REMARK 3 S TENSOR REMARK 3 S11: -0.0783 S12: 0.5713 S13: 0.5097 REMARK 3 S21: -0.3404 S22: 0.0449 S23: -0.4039 REMARK 3 S31: -0.1122 S32: 0.2957 S33: -0.0082 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 90:111) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6901 10.3152 15.6921 REMARK 3 T TENSOR REMARK 3 T11: 0.0983 T22: 0.0933 REMARK 3 T33: 0.0318 T12: -0.0064 REMARK 3 T13: -0.0300 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 2.8572 L22: 5.3115 REMARK 3 L33: 1.1862 L12: -1.1560 REMARK 3 L13: -0.6854 L23: 0.4943 REMARK 3 S TENSOR REMARK 3 S11: 0.0109 S12: -0.0139 S13: 0.1401 REMARK 3 S21: 0.1208 S22: -0.0564 S23: 0.0116 REMARK 3 S31: -0.1328 S32: 0.0120 S33: 0.0479 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 112:123) REMARK 3 ORIGIN FOR THE GROUP (A): -1.4422 10.8230 20.3482 REMARK 3 T TENSOR REMARK 3 T11: 0.0920 T22: 0.1025 REMARK 3 T33: 0.0959 T12: -0.0084 REMARK 3 T13: -0.0226 T23: -0.0218 REMARK 3 L TENSOR REMARK 3 L11: 2.4659 L22: 4.4650 REMARK 3 L33: 5.3431 L12: 0.3879 REMARK 3 L13: -0.2565 L23: 1.3104 REMARK 3 S TENSOR REMARK 3 S11: -0.0716 S12: -0.1517 S13: 0.3389 REMARK 3 S21: 0.2334 S22: -0.0578 S23: 0.2596 REMARK 3 S31: -0.0404 S32: -0.0455 S33: 0.0915 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 124:149) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4250 12.7732 27.1680 REMARK 3 T TENSOR REMARK 3 T11: 0.1304 T22: 0.1417 REMARK 3 T33: 0.1029 T12: -0.0210 REMARK 3 T13: -0.0151 T23: -0.0160 REMARK 3 L TENSOR REMARK 3 L11: 2.8033 L22: 3.4094 REMARK 3 L33: 2.6595 L12: -0.8606 REMARK 3 L13: 0.3438 L23: -0.3006 REMARK 3 S TENSOR REMARK 3 S11: 0.0354 S12: -0.2389 S13: 0.2052 REMARK 3 S21: 0.1805 S22: -0.0311 S23: -0.0932 REMARK 3 S31: -0.1097 S32: 0.0530 S33: 0.0013 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 150:180) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4632 15.9953 18.1982 REMARK 3 T TENSOR REMARK 3 T11: 0.1275 T22: 0.1021 REMARK 3 T33: 0.1148 T12: 0.0036 REMARK 3 T13: 0.0005 T23: -0.0259 REMARK 3 L TENSOR REMARK 3 L11: 2.1173 L22: 4.5967 REMARK 3 L33: 3.9219 L12: -0.1263 REMARK 3 L13: 0.9734 L23: -1.8216 REMARK 3 S TENSOR REMARK 3 S11: -0.0383 S12: 0.0075 S13: 0.1400 REMARK 3 S21: 0.0501 S22: -0.0333 S23: -0.0755 REMARK 3 S31: -0.3116 S32: -0.0474 S33: 0.0375 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DCD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000070152. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23731 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 53.995 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04900 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.53600 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: PDB ENTRY 1L1N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% (W/V) PEG 5000 MME, 100 MM MES, REMARK 280 200 MM AMMONIUM SULFATE, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 28.04150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.30350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 53.99550 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 28.04150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.30350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.99550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 28.04150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 29.30350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.99550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 28.04150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 29.30350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 53.99550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 GLN A 181 REMARK 465 SER A 182 REMARK 465 GLN A 183 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 50 CG OD1 OD2 REMARK 470 LYS A 52 CG CD CE NZ REMARK 470 GLU A 55 CG CD OE1 OE2 REMARK 470 LYS A 60 CG CD CE NZ REMARK 470 GLN A 65 CG CD OE1 NE2 REMARK 470 LYS A 78 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 32 -122.34 45.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 WHEN THE K36 LIGAND IS MIXED WITH THE POLIOVIRUS PROTEASE, IT FORMS REMARK 600 A COVALENT COMPLEX WITH A LINKAGE BETWEEN C21 OF THE LIGAND AND THE REMARK 600 SULFUR ATOM (SG) OF CYS147. THE BISULFITE FUNCTIONAL GROUP IS REMARK 600 REMOVED DURING THIS REACTION. REMARK 630 REMARK 630 MOLECULE TYPE: NULL REMARK 630 MOLECULE NAME: (1S,2S)-2-({N-[(BENZYLOXY)CARBONYL]-L-LEUCYL}AMINO)- REMARK 630 1-HYDROXY-3-[(3S)-2-OXOPYRROLIDIN-3-YL]PROPANE-1-SULFONIC ACID REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 K36 A 202 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: PHQ LEU 04F REMARK 630 DETAILS: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTT A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K36 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3UR9 RELATED DB: PDB REMARK 900 RELATED ID: 4F49 RELATED DB: PDB REMARK 900 RELATED ID: 3UR6 RELATED DB: PDB DBREF 4DCD A 1 183 UNP P03300 POLG_POL1M 1566 1748 SEQADV 4DCD MET A -6 UNP P03300 INITIATING METHIONINE SEQADV 4DCD HIS A -5 UNP P03300 EXPRESSION TAG SEQADV 4DCD HIS A -4 UNP P03300 EXPRESSION TAG SEQADV 4DCD HIS A -3 UNP P03300 EXPRESSION TAG SEQADV 4DCD HIS A -2 UNP P03300 EXPRESSION TAG SEQADV 4DCD HIS A -1 UNP P03300 EXPRESSION TAG SEQADV 4DCD HIS A 0 UNP P03300 EXPRESSION TAG SEQRES 1 A 190 MET HIS HIS HIS HIS HIS HIS GLY PRO GLY PHE ASP TYR SEQRES 2 A 190 ALA VAL ALA MET ALA LYS ARG ASN ILE VAL THR ALA THR SEQRES 3 A 190 THR SER LYS GLY GLU PHE THR MET LEU GLY VAL HIS ASP SEQRES 4 A 190 ASN VAL ALA ILE LEU PRO THR HIS ALA SER PRO GLY GLU SEQRES 5 A 190 SER ILE VAL ILE ASP GLY LYS GLU VAL GLU ILE LEU ASP SEQRES 6 A 190 ALA LYS ALA LEU GLU ASP GLN ALA GLY THR ASN LEU GLU SEQRES 7 A 190 ILE THR ILE ILE THR LEU LYS ARG ASN GLU LYS PHE ARG SEQRES 8 A 190 ASP ILE ARG PRO HIS ILE PRO THR GLN ILE THR GLU THR SEQRES 9 A 190 ASN ASP GLY VAL LEU ILE VAL ASN THR SER LYS TYR PRO SEQRES 10 A 190 ASN MET TYR VAL PRO VAL GLY ALA VAL THR GLU GLN GLY SEQRES 11 A 190 TYR LEU ASN LEU GLY GLY ARG GLN THR ALA ARG THR LEU SEQRES 12 A 190 MET TYR ASN PHE PRO THR ARG ALA GLY GLN CYS GLY GLY SEQRES 13 A 190 VAL ILE THR CYS THR GLY LYS VAL ILE GLY MET HIS VAL SEQRES 14 A 190 GLY GLY ASN GLY SER HIS GLY PHE ALA ALA ALA LEU LYS SEQRES 15 A 190 ARG SER TYR PHE THR GLN SER GLN HET DTT A 201 4 HET K36 A 202 29 HET SO4 A 203 5 HET SO4 A 204 5 HETNAM DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE HETNAM K36 (1S,2S)-2-({N-[(BENZYLOXY)CARBONYL]-L-LEUCYL}AMINO)-1- HETNAM 2 K36 HYDROXY-3-[(3S)-2-OXOPYRROLIDIN-3-YL]PROPANE-1- HETNAM 3 K36 SULFONIC ACID HETNAM SO4 SULFATE ION HETSYN DTT 1,4-DITHIOTHREITOL HETSYN K36 GC376 FORMUL 2 DTT C4 H10 O2 S2 FORMUL 3 K36 C21 H31 N3 O8 S FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 HOH *130(H2 O) HELIX 1 1 GLY A 1 ASN A 14 1 14 HELIX 2 2 HIS A 40 SER A 42 5 3 HELIX 3 3 ILE A 86 ILE A 90 5 5 HELIX 4 4 LYS A 175 THR A 180 5 6 SHEET 1 A 7 ILE A 15 THR A 20 0 SHEET 2 A 7 GLY A 23 HIS A 31 -1 O PHE A 25 N ALA A 18 SHEET 3 A 7 VAL A 34 PRO A 38 -1 O VAL A 34 N HIS A 31 SHEET 4 A 7 ASN A 69 LEU A 77 -1 O THR A 73 N LEU A 37 SHEET 5 A 7 LYS A 52 GLU A 63 -1 N LEU A 57 O THR A 76 SHEET 6 A 7 SER A 46 ILE A 49 -1 N ILE A 47 O VAL A 54 SHEET 7 A 7 ILE A 15 THR A 20 -1 N THR A 19 O VAL A 48 SHEET 1 B 7 THR A 97 VAL A 104 0 SHEET 2 B 7 MET A 112 LEU A 127 -1 O VAL A 114 N LEU A 102 SHEET 3 B 7 ARG A 130 TYR A 138 -1 O THR A 135 N GLN A 122 SHEET 4 B 7 GLY A 169 ALA A 173 -1 O ALA A 171 N LEU A 136 SHEET 5 B 7 LYS A 156 GLY A 164 -1 N MET A 160 O ALA A 172 SHEET 6 B 7 VAL A 150 CYS A 153 -1 N ILE A 151 O GLY A 159 SHEET 7 B 7 THR A 97 VAL A 104 -1 N ILE A 103 O VAL A 150 LINK SG CYS A 147 C21 K36 A 202 1555 1555 1.89 LINK C2 DTT A 201 C2 DTT A 201 1555 4555 1.52 SITE 1 AC1 4 HIS A -1 HIS A -2 HIS A 0 LYS A 12 SITE 1 AC2 15 HIS A 40 ASN A 126 LEU A 127 GLY A 128 SITE 2 AC2 15 THR A 142 ARG A 143 ALA A 144 CYS A 147 SITE 3 AC2 15 HIS A 161 VAL A 162 GLY A 163 GLY A 164 SITE 4 AC2 15 HOH A 324 HOH A 340 HOH A 365 SITE 1 AC3 6 HIS A -3 HIS A -2 GLY A 1 PRO A 2 SITE 2 AC3 6 ARG A 13 HOH A 377 SITE 1 AC4 5 ARG A 79 ASN A 80 GLU A 81 HOH A 376 SITE 2 AC4 5 HOH A 417 CRYST1 56.083 58.607 107.991 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017831 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017063 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009260 0.00000