HEADER LYASE 20-JAN-12 4DEF TITLE ACTIVE SITE LOOP DYNAMICS OF A CLASS IIA FRUCTOSE 1,6-BISPHOSPHATE TITLE 2 ALDOLASE FROM M. TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRUCTOSE-BISPHOSPHATE ALDOLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FBP ALDOLASE, FBPA, FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE; COMPND 5 EC: 4.1.2.13; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: FBA, MT0379, MTCY13E10.25C, RV0363C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET17B KEYWDS CLASS II FRUCTOSE-1, 6-BISPHOSPHATE ALDOLASE, ZINC ENZYME, KEYWDS 2 DIHYDROXYACETONE, GLYCERALDEHYDE-3-PHOSPHATE, ALDOL CONDENSATION, KEYWDS 3 GLYCOLYSIS, LYASE, METAL-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR G.C.CAPODAGLI,S.D.PEGAN REVDAT 3 13-SEP-23 4DEF 1 REMARK SEQADV LINK REVDAT 2 26-JUN-13 4DEF 1 JRNL REVDAT 1 23-JAN-13 4DEF 0 JRNL AUTH S.D.PEGAN,K.RUKSEREE,G.C.CAPODAGLI,E.A.BAKER,O.KRASNYKH, JRNL AUTH 2 S.G.FRANZBLAU,A.D.MESECAR JRNL TITL ACTIVE SITE LOOP DYNAMICS OF A CLASS IIA FRUCTOSE JRNL TITL 2 1,6-BISPHOSPHATE ALDOLASE FROM MYCOBACTERIUM TUBERCULOSIS. JRNL REF BIOCHEMISTRY V. 52 912 2013 JRNL REFN ISSN 0006-2960 JRNL PMID 23298222 JRNL DOI 10.1021/BI300928U REMARK 2 REMARK 2 RESOLUTION. 1.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.6 REMARK 3 NUMBER OF REFLECTIONS : 65335 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3306 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.64 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.68 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4592 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 228 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2455 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 424 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.17000 REMARK 3 B22 (A**2) : -1.42000 REMARK 3 B33 (A**2) : -1.75000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.080 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.075 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.411 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2603 ; 0.007 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3544 ; 1.118 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 348 ; 5.102 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 107 ;33.968 ;25.047 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 420 ;11.610 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;14.802 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 400 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1987 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 4DEF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000070225. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65340 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.640 REMARK 200 RESOLUTION RANGE LOW (A) : 96.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.20000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: PDB ENTRY 3EKL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% PEG 300, 0.1 M SODIUM ACETATE, 2% REMARK 280 DMSO, PH 4.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.32750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.85400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 82.41300 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.32750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.85400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 82.41300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.32750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 59.85400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 82.41300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.32750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 59.85400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 82.41300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -385.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 119.70800 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 119.70800 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 168 REMARK 465 GLU A 169 REMARK 465 ASP A 170 REMARK 465 GLY A 171 REMARK 465 VAL A 172 REMARK 465 ALA A 173 REMARK 465 ASN A 174 REMARK 465 GLU A 175 REMARK 465 ILE A 176 REMARK 465 ASN A 177 REMARK 465 GLU A 178 REMARK 465 LYS A 179 REMARK 465 LYS A 216 REMARK 465 PRO A 217 REMARK 465 GLY A 218 REMARK 465 ASN A 219 REMARK 465 VAL A 220 REMARK 465 HIS A 347 REMARK 465 HIS A 348 REMARK 465 HIS A 349 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 VAL A 8 N CA C O CB CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 528 O HOH A 912 1.99 REMARK 500 OE1 GLU A 161 O HOH A 808 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 65 -54.12 -120.96 REMARK 500 PRO A 87 38.04 -91.82 REMARK 500 HIS A 96 106.70 -12.23 REMARK 500 TYR A 105 -83.48 -140.74 REMARK 500 ASP A 276 -61.36 -139.19 REMARK 500 ASP A 276 -61.36 -145.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 96 NE2 REMARK 620 2 HIS A 212 NE2 117.4 REMARK 620 3 HIS A 252 ND1 89.2 137.6 REMARK 620 4 HOH A 907 O 168.1 73.4 84.9 REMARK 620 5 HOH A 917 O 98.7 99.3 109.1 73.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 211 O REMARK 620 2 GLY A 213 O 87.5 REMARK 620 3 SER A 255 O 157.6 109.3 REMARK 620 4 ACT A 404 OXT 104.7 96.6 88.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 344 ND1 REMARK 620 2 HIS A 346 NE2 117.7 REMARK 620 3 HOH A 600 O 89.5 86.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EKL RELATED DB: PDB REMARK 900 RELATED ID: 3EKZ RELATED DB: PDB REMARK 900 RELATED ID: 3ELF RELATED DB: PDB REMARK 900 RELATED ID: 4DEL RELATED DB: PDB DBREF 4DEF A 1 344 UNP P67475 ALF_MYCTU 1 344 SEQADV 4DEF HIS A 345 UNP P67475 EXPRESSION TAG SEQADV 4DEF HIS A 346 UNP P67475 EXPRESSION TAG SEQADV 4DEF HIS A 347 UNP P67475 EXPRESSION TAG SEQADV 4DEF HIS A 348 UNP P67475 EXPRESSION TAG SEQADV 4DEF HIS A 349 UNP P67475 EXPRESSION TAG SEQRES 1 A 349 MET PRO ILE ALA THR PRO GLU VAL TYR ALA GLU MET LEU SEQRES 2 A 349 GLY GLN ALA LYS GLN ASN SER TYR ALA PHE PRO ALA ILE SEQRES 3 A 349 ASN CYS THR SER SER GLU THR VAL ASN ALA ALA ILE LYS SEQRES 4 A 349 GLY PHE ALA ASP ALA GLY SER ASP GLY ILE ILE GLN PHE SEQRES 5 A 349 SER THR GLY GLY ALA GLU PHE GLY SER GLY LEU GLY VAL SEQRES 6 A 349 LYS ASP MET VAL THR GLY ALA VAL ALA LEU ALA GLU PHE SEQRES 7 A 349 THR HIS VAL ILE ALA ALA LYS TYR PRO VAL ASN VAL ALA SEQRES 8 A 349 LEU HIS THR ASP HIS CYS PRO LYS ASP LYS LEU ASP SER SEQRES 9 A 349 TYR VAL ARG PRO LEU LEU ALA ILE SER ALA GLN ARG VAL SEQRES 10 A 349 SER LYS GLY GLY ASN PRO LEU PHE GLN SER HIS MET TRP SEQRES 11 A 349 ASP GLY SER ALA VAL PRO ILE ASP GLU ASN LEU ALA ILE SEQRES 12 A 349 ALA GLN GLU LEU LEU LYS ALA ALA ALA ALA ALA LYS ILE SEQRES 13 A 349 ILE LEU GLU ILE GLU ILE GLY VAL VAL GLY GLY GLU GLU SEQRES 14 A 349 ASP GLY VAL ALA ASN GLU ILE ASN GLU LYS LEU TYR THR SEQRES 15 A 349 SER PRO GLU ASP PHE GLU LYS THR ILE GLU ALA LEU GLY SEQRES 16 A 349 ALA GLY GLU HIS GLY LYS TYR LEU LEU ALA ALA THR PHE SEQRES 17 A 349 GLY ASN VAL HIS GLY VAL TYR LYS PRO GLY ASN VAL LYS SEQRES 18 A 349 LEU ARG PRO ASP ILE LEU ALA GLN GLY GLN GLN VAL ALA SEQRES 19 A 349 ALA ALA LYS LEU GLY LEU PRO ALA ASP ALA LYS PRO PHE SEQRES 20 A 349 ASP PHE VAL PHE HIS GLY GLY SER GLY SER LEU LYS SER SEQRES 21 A 349 GLU ILE GLU GLU ALA LEU ARG TYR GLY VAL VAL LYS MET SEQRES 22 A 349 ASN VAL ASP THR ASP THR GLN TYR ALA PHE THR ARG PRO SEQRES 23 A 349 ILE ALA GLY HIS MET PHE THR ASN TYR ASP GLY VAL LEU SEQRES 24 A 349 LYS VAL ASP GLY GLU VAL GLY VAL LYS LYS VAL TYR ASP SEQRES 25 A 349 PRO ARG SER TYR LEU LYS LYS ALA GLU ALA SER MET SER SEQRES 26 A 349 GLN ARG VAL VAL GLN ALA CYS ASN ASP LEU HIS CYS ALA SEQRES 27 A 349 GLY LYS SER LEU THR HIS HIS HIS HIS HIS HIS HET ZN A 401 1 HET ZN A 402 1 HET NA A 403 1 HET ACT A 404 4 HETNAM ZN ZINC ION HETNAM NA SODIUM ION HETNAM ACT ACETATE ION FORMUL 2 ZN 2(ZN 2+) FORMUL 4 NA NA 1+ FORMUL 5 ACT C2 H3 O2 1- FORMUL 6 HOH *424(H2 O) HELIX 1 1 THR A 5 SER A 20 1 16 HELIX 2 2 SER A 30 ALA A 44 1 15 HELIX 3 3 SER A 53 SER A 61 1 9 HELIX 4 4 ASP A 67 ALA A 84 1 18 HELIX 5 5 PRO A 98 SER A 104 5 7 HELIX 6 6 TYR A 105 LYS A 119 1 15 HELIX 7 7 PRO A 136 ALA A 154 1 19 HELIX 8 8 SER A 183 GLY A 195 1 13 HELIX 9 9 PRO A 224 GLY A 239 1 16 HELIX 10 10 LEU A 258 TYR A 268 1 11 HELIX 11 11 ASP A 276 ASN A 294 1 19 HELIX 12 12 ASN A 294 LEU A 299 1 6 HELIX 13 13 VAL A 307 ASP A 312 1 6 HELIX 14 14 ASP A 312 LEU A 335 1 24 SHEET 1 A 9 PHE A 23 ASN A 27 0 SHEET 2 A 9 GLY A 48 PHE A 52 1 O ILE A 49 N ILE A 26 SHEET 3 A 9 VAL A 90 THR A 94 1 O ALA A 91 N ILE A 50 SHEET 4 A 9 SER A 127 TRP A 130 1 N SER A 127 O LEU A 92 SHEET 5 A 9 ILE A 157 ILE A 162 1 O GLU A 159 N TRP A 130 SHEET 6 A 9 TYR A 202 ALA A 206 1 O ALA A 205 N ILE A 160 SHEET 7 A 9 PHE A 249 PHE A 251 1 O VAL A 250 N LEU A 204 SHEET 8 A 9 VAL A 270 VAL A 275 1 O LYS A 272 N PHE A 251 SHEET 9 A 9 PHE A 23 ASN A 27 1 N ALA A 25 O VAL A 275 LINK NE2 HIS A 96 ZN ZN A 401 1555 1555 1.99 LINK O VAL A 211 NA NA A 403 1555 1555 2.82 LINK NE2 HIS A 212 ZN ZN A 401 1555 1555 2.20 LINK O GLY A 213 NA NA A 403 1555 1555 3.09 LINK ND1 HIS A 252 ZN ZN A 401 1555 1555 2.14 LINK O SER A 255 NA NA A 403 1555 1555 2.76 LINK ND1 HIS A 344 ZN ZN A 402 1555 1555 1.92 LINK NE2 HIS A 346 ZN ZN A 402 1555 1555 2.16 LINK ZN ZN A 401 O HOH A 907 1555 1555 2.04 LINK ZN ZN A 401 O HOH A 917 1555 1555 2.17 LINK ZN ZN A 402 O HOH A 600 1555 1555 2.32 LINK NA NA A 403 OXT ACT A 404 1555 1555 2.90 SITE 1 AC1 5 HIS A 96 HIS A 212 HIS A 252 HOH A 907 SITE 2 AC1 5 HOH A 917 SITE 1 AC2 5 GLU A 198 HIS A 199 HIS A 344 HIS A 346 SITE 2 AC2 5 HOH A 600 SITE 1 AC3 5 VAL A 211 GLY A 213 GLY A 253 SER A 255 SITE 2 AC3 5 ACT A 404 SITE 1 AC4 8 HIS A 212 GLY A 213 SER A 255 ASP A 276 SITE 2 AC4 8 THR A 277 NA A 403 HOH A 559 HOH A 918 CRYST1 60.655 119.708 164.826 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016487 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008354 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006067 0.00000